Wall clock time and date at job start Tue Mar 31 2020 21:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30615 * 125.42597 * 2 1 4 4 C 1.33691 * 108.99838 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.27460 * 180.02562 * 4 3 2 6 6 C 1.36335 * 107.45178 * 359.97438 * 4 3 2 7 7 C 1.46723 * 126.64492 * 179.97438 * 6 4 3 8 8 O 1.21681 * 119.99774 * 0.02562 * 7 6 4 9 9 N 1.34773 * 120.00093 * 180.02562 * 7 6 4 10 10 C 1.46506 * 120.00163 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47125 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47352 * 294.99685 * 11 10 9 13 13 C 1.53005 * 109.47095 * 174.99729 * 11 10 9 14 14 N 1.46901 * 109.47356 * 55.00318 * 11 10 9 15 15 C 1.46902 * 111.00040 * 66.04114 * 14 11 10 16 16 C 1.46899 * 111.00103 * 189.99936 * 14 11 10 17 17 C 1.50703 * 109.47107 * 169.99758 * 16 14 11 18 18 O 1.21286 * 120.00016 * 359.97438 * 17 16 14 19 19 N 1.34777 * 120.00161 * 180.02562 * 17 16 14 20 20 C 1.37091 * 120.00108 * 180.02562 * 19 17 16 21 21 H 1.07995 * 120.00333 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99712 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00268 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99720 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47452 * 60.00137 * 24 22 20 26 26 H 1.48505 * 109.46988 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47061 * 299.99710 * 24 22 20 28 28 O 1.33668 * 125.42299 * 180.29224 * 2 1 3 29 29 H 1.08997 * 109.47235 * 90.01987 * 1 2 3 30 30 H 1.08994 * 109.46833 * 210.02597 * 1 2 3 31 31 H 1.09004 * 109.46574 * 330.02371 * 1 2 3 32 32 H 1.09003 * 109.46576 * 269.97327 * 5 4 3 33 33 H 1.09000 * 109.47185 * 29.96925 * 5 4 3 34 34 H 1.08992 * 109.47301 * 149.96836 * 5 4 3 35 35 H 0.96997 * 120.00447 * 359.97438 * 9 7 6 36 36 H 1.08999 * 109.46843 * 59.99746 * 10 9 7 37 37 H 1.08999 * 109.46619 * 300.00115 * 10 9 7 38 38 H 1.08991 * 109.47175 * 179.97438 * 13 11 10 39 39 H 1.08998 * 109.46985 * 300.00181 * 13 11 10 40 40 H 1.08998 * 109.46803 * 60.00094 * 13 11 10 41 41 H 1.09005 * 109.46528 * 183.95480 * 15 14 11 42 42 H 1.09000 * 109.46785 * 303.95569 * 15 14 11 43 43 H 1.08997 * 109.47044 * 63.96124 * 15 14 11 44 44 H 1.09002 * 109.47043 * 289.99738 * 16 14 11 45 45 H 1.09001 * 109.47354 * 49.99799 * 16 14 11 46 46 H 0.97005 * 119.99463 * 359.97438 * 19 17 16 47 47 H 0.96996 * 119.99832 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2641 1.0643 0.0000 4 6 3.5465 0.6863 -0.0006 5 6 4.7453 1.5994 -0.0002 6 6 3.5708 -0.6769 -0.0003 7 6 4.7635 -1.5314 -0.0013 8 8 5.8718 -1.0291 -0.0020 9 7 4.6316 -2.8727 -0.0015 10 6 5.8225 -3.7260 -0.0030 11 6 5.3969 -5.1955 -0.0022 12 1 4.8800 -5.4237 0.9299 13 6 6.6352 -6.0852 -0.1296 14 7 4.4961 -5.4451 -1.1355 15 6 5.2020 -5.2863 -2.4140 16 6 3.8805 -6.7752 -1.0357 17 6 2.7884 -6.9018 -2.0663 18 8 2.5464 -5.9752 -2.8105 19 7 2.0799 -8.0445 -2.1605 20 6 1.0867 -8.1599 -3.0985 21 1 0.8718 -7.3351 -3.7617 22 6 0.3567 -9.3382 -3.1959 23 7 0.6179 -10.3416 -2.3886 24 14 -0.9961 -9.4957 -4.4744 25 1 -0.4184 -9.3185 -5.8309 26 1 -1.6190 -10.8399 -4.3729 27 1 -2.0269 -8.4537 -4.2354 28 8 2.2818 -1.0892 -0.0056 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3632 0.8903 0.5135 32 1 5.0343 1.8199 -1.0279 33 1 4.4950 2.5274 0.5138 34 1 5.5735 1.1116 0.5135 35 1 3.7481 -3.2731 -0.0006 36 1 6.4181 -3.5200 0.8863 37 1 6.4160 -3.5196 -0.8936 38 1 6.3321 -7.1321 -0.1286 39 1 7.1521 -5.8570 -1.0617 40 1 7.3036 -5.9000 0.7112 41 1 4.4965 -5.4075 -3.2360 42 1 5.6483 -4.2930 -2.4616 43 1 5.9849 -6.0406 -2.4929 44 1 4.6370 -7.5398 -1.2120 45 1 3.4571 -6.9058 -0.0398 46 1 2.2732 -8.7855 -1.5651 47 1 0.1080 -11.1640 -2.4564 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329408215.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:25 Heat of formation + Delta-G solvation = -70.864526 kcal Electronic energy + Delta-G solvation = -29580.439449 eV Core-core repulsion = 25378.175409 eV Total energy + Delta-G solvation = -4202.264040 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.53960 -40.95149 -40.30105 -38.77201 -36.57188 -35.96520 -35.29152 -33.80868 -33.25506 -32.13500 -30.30560 -29.33346 -29.01567 -27.05835 -26.87553 -25.31726 -23.20942 -22.82022 -21.63666 -21.31402 -20.70732 -19.80189 -19.15721 -18.18916 -17.95057 -17.30049 -17.02532 -16.80488 -16.54956 -16.27325 -15.92290 -15.69165 -15.46987 -15.23693 -14.98072 -14.72479 -14.34234 -14.18608 -14.08766 -13.96642 -13.79114 -13.67408 -13.50047 -13.43400 -13.15956 -13.09431 -12.89256 -12.80579 -12.44463 -12.39554 -12.28805 -12.12167 -12.07885 -12.02393 -11.78018 -11.42694 -11.29062 -10.30875 -10.26161 -9.97473 -9.80004 -9.18347 -8.44681 -5.92625 -0.31222 1.26185 1.33415 1.40038 1.42049 1.52313 1.93067 2.09612 2.11414 2.29239 2.75243 2.87407 3.22755 3.44681 3.61139 3.65945 3.72125 4.05244 4.24347 4.27959 4.29126 4.33056 4.36588 4.53903 4.56259 4.58522 4.59841 4.62010 4.66340 4.67457 4.73780 4.74657 4.85832 4.87120 4.99638 5.07070 5.18507 5.25047 5.30058 5.35741 5.42815 5.88427 6.07104 6.19268 6.26355 6.51959 6.63788 6.92705 7.16063 7.60446 8.16776 8.72502 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010917 B = 0.002856 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.256173 B = 9800.742157 C =11869.851164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.226 3.774 3 N -0.514 5.514 4 C 0.073 3.927 5 C -0.075 4.075 6 C -0.144 4.144 7 C 0.607 3.393 8 O -0.545 6.545 9 N -0.696 5.696 10 C 0.132 3.868 11 C 0.069 3.931 12 H 0.105 0.895 13 C -0.180 4.180 14 N -0.526 5.526 15 C 0.026 3.974 16 C 0.059 3.941 17 C 0.442 3.558 18 O -0.614 6.614 19 N -0.576 5.576 20 C -0.330 4.330 21 H 0.078 0.922 22 C -0.012 4.012 23 N -0.921 5.921 24 Si 0.989 3.011 25 H -0.274 1.274 26 H -0.272 1.272 27 H -0.271 1.271 28 O -0.195 6.195 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.123 0.877 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.414 0.586 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.085 0.915 41 H 0.053 0.947 42 H 0.067 0.933 43 H 0.038 0.962 44 H 0.070 0.930 45 H 0.112 0.888 46 H 0.395 0.605 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.141 14.219 9.970 18.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.022 3.978 3 N -0.244 5.244 4 C -0.052 4.052 5 C -0.132 4.132 6 C -0.199 4.199 7 C 0.393 3.607 8 O -0.426 6.426 9 N -0.345 5.345 10 C 0.009 3.991 11 C -0.040 4.040 12 H 0.123 0.877 13 C -0.239 4.239 14 N -0.250 5.250 15 C -0.121 4.121 16 C -0.072 4.072 17 C 0.230 3.770 18 O -0.500 6.500 19 N -0.213 5.213 20 C -0.459 4.459 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.562 5.562 24 Si 0.813 3.187 25 H -0.199 1.199 26 H -0.196 1.196 27 H -0.197 1.197 28 O -0.083 6.083 29 H 0.130 0.870 30 H 0.127 0.873 31 H 0.142 0.858 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.250 0.750 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.104 0.896 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.056 0.944 44 H 0.088 0.912 45 H 0.130 0.870 46 H 0.229 0.771 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.046 15.838 9.510 19.772 hybrid contribution -0.231 -2.162 -0.630 2.264 sum 6.816 13.676 8.879 17.673 Atomic orbital electron populations 1.20727 0.77523 1.07193 1.06613 1.27629 0.98262 0.77885 0.94070 1.70386 1.01659 1.30577 1.21820 1.22492 0.94310 0.91549 0.96812 1.20407 0.91166 0.97473 1.04169 1.22919 0.82841 0.95462 1.18671 1.16336 0.85226 0.82101 0.77069 1.90805 1.24306 1.74450 1.53000 1.45792 1.11995 1.04535 1.72224 1.21586 0.86505 0.88073 1.02932 1.22108 0.93439 0.93668 0.94751 0.87750 1.22349 0.97957 0.99944 1.03626 1.61707 1.32828 1.27703 1.02803 1.22396 0.97109 1.00713 0.91930 1.21746 0.95276 0.91221 0.99000 1.20810 0.85851 0.82792 0.87590 1.90474 1.71369 1.40356 1.47760 1.41926 1.31830 1.14402 1.33169 1.19581 1.12159 1.00620 1.13579 0.90429 1.25975 1.00765 0.94508 0.99960 1.69658 1.42527 1.05112 1.38949 0.85049 0.77903 0.77687 0.78084 1.19908 1.19625 1.19666 1.84498 1.16167 1.37972 1.69637 0.86952 0.87281 0.85830 0.89458 0.89016 0.89199 0.74969 0.89000 0.91664 0.91674 0.92085 0.89567 0.92869 0.91421 0.94398 0.91209 0.87010 0.77083 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.81 10.51 71.24 0.75 -0.06 16 2 C 0.23 5.29 8.32 88.29 0.73 6.02 16 3 N -0.51 -13.51 11.26 -291.06 -3.28 -16.78 16 4 C 0.07 1.97 7.16 41.83 0.30 2.27 16 5 C -0.08 -1.62 9.87 71.24 0.70 -0.92 16 6 C -0.14 -4.13 7.18 24.04 0.17 -3.96 16 7 C 0.61 17.28 7.79 86.46 0.67 17.95 16 8 O -0.54 -16.81 14.79 -4.29 -0.06 -16.88 16 9 N -0.70 -17.62 5.38 -467.05 -2.51 -20.13 16 10 C 0.13 2.78 4.85 86.38 0.42 3.20 16 11 C 0.07 1.37 2.47 44.91 0.11 1.48 16 12 H 0.10 1.82 7.93 -2.39 -0.02 1.80 16 13 C -0.18 -2.91 8.44 71.98 0.61 -2.31 16 14 N -0.53 -14.97 3.89 -901.60 -3.51 -18.48 16 15 C 0.03 0.80 8.33 127.69 1.06 1.87 16 16 C 0.06 1.83 5.02 85.56 0.43 2.26 16 17 C 0.44 19.98 7.51 87.66 0.66 20.63 16 18 O -0.61 -32.49 13.89 -3.05 -0.04 -32.53 16 19 N -0.58 -28.50 5.29 -306.99 -1.62 -30.13 16 20 C -0.33 -18.30 9.68 84.04 0.81 -17.48 16 21 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 22 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 23 N -0.92 -48.88 13.05 21.66 0.28 -48.60 16 24 Si 0.99 42.30 29.55 68.60 2.03 44.33 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 26 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 28 O -0.20 -5.39 10.57 -7.11 -0.08 -5.46 16 29 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.09 2.03 6.47 -2.39 -0.02 2.01 16 35 H 0.41 11.02 7.93 -92.71 -0.74 10.29 16 36 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.07 1.49 6.71 -2.39 -0.02 1.47 16 38 H 0.06 1.09 6.91 -2.39 -0.02 1.07 16 39 H 0.06 1.06 6.42 -2.39 -0.02 1.04 16 40 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.05 2.10 5.88 -2.38 -0.01 2.09 16 42 H 0.07 1.91 6.40 -2.39 -0.02 1.90 16 43 H 0.04 1.01 6.46 -2.39 -0.02 0.99 16 44 H 0.07 1.95 7.06 -2.39 -0.02 1.94 16 45 H 0.11 2.99 7.93 -2.39 -0.02 2.98 16 46 H 0.40 18.60 7.90 -92.70 -0.73 17.86 16 47 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -72.11 388.08 -1.33 -73.44 By element: Atomic # 1 Polarization: 40.90 SS G_CDS: -0.44 Total: 40.46 kcal Atomic # 6 Polarization: 22.86 SS G_CDS: 7.90 Total: 30.76 kcal Atomic # 7 Polarization: -123.48 SS G_CDS: -10.64 Total: -134.12 kcal Atomic # 8 Polarization: -54.69 SS G_CDS: -0.18 Total: -54.87 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -72.11 -1.33 -73.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329408215.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.575 kcal (2) G-P(sol) polarization free energy of solvation -72.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds