Wall clock time and date at job start Tue Mar 31 2020 21:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31872 * 119.93415 * 2 1 4 4 N 1.28279 * 122.62734 * 180.02562 * 3 2 1 5 5 C 1.32485 * 122.21631 * 359.97438 * 4 3 2 6 6 O 1.35450 * 120.25624 * 180.02562 * 5 4 3 7 7 C 1.40455 * 119.49767 * 0.02562 * 5 4 3 8 8 C 1.47818 * 121.18448 * 179.97438 * 7 5 4 9 9 O 1.21552 * 119.99893 * 89.99862 * 8 7 5 10 10 N 1.34774 * 120.00444 * 270.00352 * 8 7 5 11 11 C 1.46498 * 120.00569 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47193 * 179.97438 * 11 10 8 13 13 O 1.42908 * 109.47154 * 65.00319 * 12 11 10 14 14 C 1.42894 * 113.99830 * 180.02562 * 13 12 11 15 15 C 1.53008 * 109.46903 * 179.97438 * 14 13 12 16 16 N 1.46504 * 109.46607 * 64.99996 * 15 14 13 17 17 C 1.46500 * 119.99751 * 269.99695 * 16 15 14 18 18 C 1.36931 * 119.99886 * 90.00169 * 16 15 14 19 19 H 1.08007 * 120.00449 * 22.70794 * 18 16 15 20 20 C 1.38820 * 120.00001 * 202.70261 * 18 16 15 21 21 N 1.31617 * 119.99522 * 11.50608 * 20 18 16 22 22 Si 1.86795 * 119.99905 * 191.50691 * 20 18 16 23 23 H 1.48504 * 109.47363 * 90.00254 * 22 20 18 24 24 H 1.48506 * 109.46736 * 209.99689 * 22 20 18 25 25 H 1.48497 * 109.47407 * 329.99599 * 22 20 18 26 26 C 1.38486 * 119.92792 * 180.25999 * 2 1 3 27 27 C 1.50694 * 121.06157 * 0.02562 * 26 2 1 28 28 H 1.08999 * 109.46988 * 90.00068 * 1 2 3 29 29 H 1.08997 * 109.47268 * 209.99806 * 1 2 3 30 30 H 1.09003 * 109.46984 * 330.00152 * 1 2 3 31 31 H 0.96694 * 113.99850 * 269.98314 * 6 5 4 32 32 H 0.97007 * 119.99181 * 359.97438 * 10 8 7 33 33 H 1.08999 * 109.46803 * 299.99993 * 11 10 8 34 34 H 1.08996 * 109.46863 * 60.00063 * 11 10 8 35 35 H 1.09002 * 109.47228 * 184.99675 * 12 11 10 36 36 H 1.09000 * 109.47273 * 305.00111 * 12 11 10 37 37 H 1.08997 * 109.47269 * 299.99741 * 14 13 12 38 38 H 1.08998 * 109.47549 * 59.99722 * 14 13 12 39 39 H 1.08997 * 109.46823 * 185.00047 * 15 14 13 40 40 H 1.08992 * 109.46818 * 305.00013 * 15 14 13 41 41 H 1.08993 * 109.47135 * 93.92343 * 17 16 15 42 42 H 1.09006 * 109.46654 * 213.92331 * 17 16 15 43 43 H 1.09000 * 109.47241 * 333.92235 * 17 16 15 44 44 H 0.97001 * 120.00050 * 180.02562 * 21 20 18 45 45 H 1.08997 * 109.47215 * 270.22462 * 27 26 2 46 46 H 1.08999 * 109.47003 * 30.22866 * 27 26 2 47 47 H 1.09002 * 109.47109 * 150.22300 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1651 1.1428 0.0000 4 7 3.4465 1.2031 -0.0005 5 6 4.2047 0.1166 -0.0005 6 8 5.5547 0.2265 -0.0005 7 6 3.5979 -1.1501 -0.0006 8 6 4.4078 -2.3867 -0.0012 9 8 4.7412 -2.8953 1.0513 10 7 4.7767 -2.9502 -1.1686 11 6 5.5798 -4.1754 -1.1692 12 6 5.8581 -4.6021 -2.6119 13 8 6.6715 -3.6166 -3.2517 14 6 6.9910 -3.9199 -4.6110 15 6 7.8597 -2.8025 -5.1923 16 7 9.1452 -2.7683 -4.4903 17 6 9.3051 -1.9365 -3.2950 18 6 10.1972 -3.5137 -4.9516 19 1 10.2261 -3.8255 -5.9852 20 6 11.2267 -3.8686 -4.0906 21 7 11.0907 -3.6903 -2.7936 22 14 12.8047 -4.5992 -4.7727 23 1 13.7661 -3.5079 -5.0732 24 1 13.3982 -5.5193 -3.7695 25 1 12.5045 -5.3511 -6.0175 26 6 2.1980 -1.2002 -0.0054 27 6 1.4671 -2.5180 -0.0120 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 5.9467 0.2582 -0.8839 32 1 4.5103 -2.5444 -2.0084 33 1 6.5236 -3.9914 -0.6559 34 1 5.0349 -4.9672 -0.6552 35 1 6.3787 -5.5597 -2.6136 36 1 4.9153 -4.7001 -3.1501 37 1 7.5349 -4.8635 -4.6546 38 1 6.0715 -4.0035 -5.1904 39 1 8.0296 -2.9888 -6.2527 40 1 7.3523 -1.8460 -5.0681 41 1 9.1121 -2.5369 -2.4061 42 1 10.3226 -1.5472 -3.2568 43 1 8.5997 -1.1064 -3.3330 44 1 11.8102 -3.9379 -2.1920 45 1 1.2870 -2.8387 1.0140 46 1 0.5146 -2.4027 -0.5292 47 1 2.0712 -3.2659 -0.5257 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331136910.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:43 Heat of formation + Delta-G solvation = -69.796282 kcal Electronic energy + Delta-G solvation = -29793.205715 eV Core-core repulsion = 25590.987998 eV Total energy + Delta-G solvation = -4202.217717 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.66238 -40.70986 -39.07231 -38.91997 -37.23387 -36.06942 -35.82227 -33.84063 -33.37857 -31.08183 -29.82965 -29.34232 -28.89366 -27.81086 -25.76771 -24.81049 -23.83294 -23.41147 -22.14385 -21.92621 -20.11976 -19.44240 -18.77441 -18.69590 -17.80575 -17.51793 -17.15716 -16.88046 -16.33413 -15.97655 -15.88619 -15.70243 -15.31056 -15.23088 -15.01900 -14.73531 -14.48735 -14.13350 -14.05915 -13.91671 -13.80944 -13.58675 -13.30566 -13.15134 -13.05890 -12.89708 -12.73569 -12.53937 -12.51359 -12.33282 -12.29744 -12.01392 -11.81892 -11.70305 -11.65478 -11.08274 -10.62242 -10.60108 -10.54287 -10.38691 -10.32494 -8.72757 -7.77929 -5.25896 -0.72150 -0.44196 1.15468 1.45974 1.47714 1.55743 1.80707 2.03750 2.24553 2.52403 2.84156 2.95372 3.24228 3.29841 3.35353 3.57419 3.77580 3.79507 3.93523 4.09266 4.16557 4.32584 4.44417 4.52356 4.55846 4.59093 4.61733 4.65448 4.69371 4.75258 4.78704 4.85516 4.94364 4.96588 5.00780 5.01602 5.16947 5.22877 5.32430 5.38964 5.66747 5.84636 6.20610 6.26352 6.35799 6.46064 6.88326 7.19445 7.43209 7.93354 8.38065 9.24745 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018202 B = 0.002528 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.945036 B =11071.572951 C =11410.027380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.063 3.937 3 N -0.230 5.230 4 N -0.285 5.285 5 C 0.280 3.720 6 O -0.483 6.483 7 C -0.162 4.162 8 C 0.579 3.421 9 O -0.563 6.563 10 N -0.692 5.692 11 C 0.129 3.871 12 C 0.053 3.947 13 O -0.394 6.394 14 C 0.053 3.947 15 C 0.144 3.856 16 N -0.613 5.613 17 C 0.195 3.805 18 C -0.259 4.259 19 H 0.074 0.926 20 C -0.056 4.056 21 N -0.936 5.936 22 Si 0.965 3.035 23 H -0.289 1.289 24 H -0.299 1.299 25 H -0.265 1.265 26 C -0.017 4.017 27 C -0.125 4.125 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.087 0.913 31 H 0.425 0.575 32 H 0.416 0.584 33 H 0.046 0.954 34 H 0.102 0.898 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.021 0.979 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.000 1.000 42 H 0.005 0.995 43 H 0.021 0.979 44 H 0.243 0.757 45 H 0.100 0.900 46 H 0.126 0.874 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.163 0.918 0.252 27.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.083 4.083 3 N -0.074 5.074 4 N -0.136 5.136 5 C 0.093 3.907 6 O -0.292 6.292 7 C -0.177 4.177 8 C 0.363 3.637 9 O -0.441 6.441 10 N -0.343 5.343 11 C 0.006 3.994 12 C -0.024 4.024 13 O -0.314 6.314 14 C -0.026 4.026 15 C 0.018 3.982 16 N -0.336 5.336 17 C 0.050 3.950 18 C -0.389 4.389 19 H 0.092 0.908 20 C -0.251 4.251 21 N -0.583 5.583 22 Si 0.794 3.206 23 H -0.216 1.216 24 H -0.226 1.226 25 H -0.190 1.190 26 C -0.029 4.029 27 C -0.181 4.181 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.106 0.894 31 H 0.288 0.712 32 H 0.252 0.748 33 H 0.064 0.936 34 H 0.120 0.880 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.040 0.960 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.019 0.981 42 H 0.024 0.976 43 H 0.040 0.960 44 H 0.053 0.947 45 H 0.118 0.882 46 H 0.144 0.856 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -26.706 2.298 1.757 26.862 hybrid contribution 1.966 -1.810 -0.702 2.763 sum -24.740 0.488 1.055 24.767 Atomic orbital electron populations 1.20961 0.83207 1.05911 1.05749 1.23470 1.01381 0.88202 0.95285 1.72763 0.99733 1.26169 1.08779 1.73008 1.00407 1.27003 1.13183 1.20981 0.86377 0.88604 0.94712 1.84732 1.13180 1.95216 1.36078 1.21314 0.95850 0.94160 1.06377 1.17764 0.78996 0.82768 0.84155 1.90830 1.56531 1.63992 1.32768 1.45771 1.52895 1.27595 1.08058 1.21420 0.94906 0.86596 0.96520 1.22729 0.95487 0.92279 0.91914 1.87959 1.71052 1.45684 1.26671 1.23239 0.97908 0.99363 0.82105 1.21143 0.84936 0.96705 0.95373 1.44095 1.08297 1.50597 1.30636 1.20322 0.95638 0.90595 0.88447 1.19568 0.99052 1.26716 0.93613 0.90807 1.25794 1.02775 1.01156 0.95402 1.70276 1.32388 1.53441 1.02192 0.85298 0.80217 0.77688 0.77424 1.21638 1.22640 1.18963 1.21535 0.90398 0.99643 0.91315 1.21173 1.01968 0.89724 1.05239 0.87224 0.87127 0.89422 0.71241 0.74753 0.93551 0.88013 0.92420 0.89692 0.96023 0.91088 0.91088 0.92068 0.98132 0.97576 0.96013 0.94737 0.88163 0.85577 0.90515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.62 9.42 71.24 0.67 0.05 16 2 C 0.06 1.03 6.86 42.61 0.29 1.33 16 3 N -0.23 -5.57 11.40 -47.73 -0.54 -6.12 16 4 N -0.29 -8.18 11.52 -169.57 -1.95 -10.13 16 5 C 0.28 7.71 7.88 85.13 0.67 8.38 16 6 O -0.48 -13.73 13.09 -87.47 -1.14 -14.88 16 7 C -0.16 -3.85 5.69 -19.75 -0.11 -3.96 16 8 C 0.58 15.51 5.62 86.78 0.49 16.00 16 9 O -0.56 -20.05 17.11 -3.88 -0.07 -20.12 16 10 N -0.69 -15.33 5.50 -466.02 -2.56 -17.89 16 11 C 0.13 3.20 6.06 86.38 0.52 3.72 16 12 C 0.05 1.27 6.07 71.98 0.44 1.71 16 13 O -0.39 -12.95 9.84 -148.98 -1.47 -14.41 16 14 C 0.05 1.70 6.28 71.98 0.45 2.15 16 15 C 0.14 5.33 6.12 86.38 0.53 5.86 16 16 N -0.61 -30.16 2.89 -726.92 -2.10 -32.26 16 17 C 0.20 9.92 8.61 127.77 1.10 11.02 16 18 C -0.26 -13.99 9.67 84.04 0.81 -13.18 16 19 H 0.07 3.80 7.85 -2.91 -0.02 3.77 16 20 C -0.06 -3.17 5.12 84.86 0.43 -2.74 16 21 N -0.94 -56.59 10.62 21.65 0.23 -56.36 16 22 Si 0.96 45.32 29.57 68.60 2.03 47.35 16 23 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 24 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 26 C -0.02 -0.28 5.96 -19.36 -0.12 -0.40 16 27 C -0.12 -1.06 8.92 71.23 0.64 -0.43 16 28 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.11 0.12 6.80 -2.39 -0.02 0.10 16 30 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.43 8.53 9.06 -74.06 -0.67 7.86 16 32 H 0.42 7.34 8.46 -92.70 -0.78 6.56 16 33 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 34 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.06 1.48 8.14 -2.39 -0.02 1.47 16 36 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.07 2.42 8.03 -2.39 -0.02 2.40 16 40 H 0.06 2.03 7.86 -2.39 -0.02 2.01 16 41 H 0.00 0.02 7.43 -2.39 -0.02 0.00 16 42 H 0.01 0.31 7.20 -2.38 -0.02 0.29 16 43 H 0.02 0.94 7.85 -2.39 -0.02 0.92 16 44 H 0.24 14.48 8.31 -92.71 -0.77 13.71 16 45 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.13 0.15 6.83 -2.39 -0.02 0.14 16 47 H 0.08 0.74 7.24 -2.39 -0.02 0.73 16 Total: -1.00 -82.46 397.32 -1.21 -83.67 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -0.44 Total: 11.64 kcal Atomic # 6 Polarization: 22.69 SS G_CDS: 6.82 Total: 29.51 kcal Atomic # 7 Polarization: -115.83 SS G_CDS: -6.93 Total: -122.76 kcal Atomic # 8 Polarization: -46.74 SS G_CDS: -2.68 Total: -49.41 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -82.46 -1.21 -83.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331136910.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.872 kcal (2) G-P(sol) polarization free energy of solvation -82.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds