Wall clock time and date at job start Tue Mar 31 2020 22:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50698 * 109.47305 * 2 1 4 4 O 1.33500 * 126.82998 * 270.02447 * 3 2 1 5 5 N 1.20657 * 113.15910 * 180.02562 * 4 3 2 6 6 C 1.30013 * 112.29804 * 359.97438 * 5 4 3 7 7 C 1.37355 * 126.83349 * 90.02273 * 3 2 1 8 8 C 1.47409 * 128.56378 * 0.02562 * 7 3 2 9 9 O 1.21610 * 119.99307 * 354.37858 * 8 7 3 10 10 N 1.34772 * 120.00112 * 174.37109 * 8 7 3 11 11 C 1.46498 * 120.00130 * 5.21078 * 10 8 7 12 12 C 1.46500 * 119.99788 * 185.20805 * 10 8 7 13 13 C 1.53000 * 109.47190 * 84.17853 * 12 10 8 14 14 H 1.09001 * 109.46707 * 297.26106 * 13 12 10 15 15 C 1.53002 * 109.47049 * 177.25878 * 13 12 10 16 16 N 1.46897 * 109.47132 * 57.25976 * 13 12 10 17 17 C 1.46898 * 110.99980 * 205.84692 * 16 13 12 18 18 C 1.50699 * 109.47273 * 179.97438 * 17 16 13 19 19 O 1.21294 * 120.00033 * 0.02562 * 18 17 16 20 20 N 1.34776 * 120.00293 * 180.02562 * 18 17 16 21 21 C 1.37095 * 120.00290 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99707 * 359.97438 * 21 20 18 23 23 C 1.38953 * 120.00144 * 179.97438 * 21 20 18 24 24 N 1.31412 * 119.99936 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99871 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47113 * 60.00180 * 25 23 21 27 27 H 1.48504 * 109.46710 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.46989 * 299.99616 * 25 23 21 29 29 H 1.09000 * 109.47234 * 300.00163 * 1 2 3 30 30 H 1.09000 * 109.47101 * 60.00337 * 1 2 3 31 31 H 1.09001 * 109.47572 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47234 * 239.99837 * 2 1 3 33 33 H 1.09000 * 109.47101 * 119.99663 * 2 1 3 34 34 H 1.08007 * 127.33042 * 180.02562 * 6 5 4 35 35 H 1.09004 * 109.47420 * 57.18165 * 11 10 8 36 36 H 1.08999 * 109.47159 * 177.18152 * 11 10 8 37 37 H 1.09003 * 109.47154 * 297.18651 * 11 10 8 38 38 H 1.09008 * 109.46967 * 204.17757 * 12 10 8 39 39 H 1.09003 * 109.47188 * 324.17229 * 12 10 8 40 40 H 1.08995 * 109.46881 * 300.00291 * 15 13 12 41 41 H 1.09003 * 109.46759 * 59.99725 * 15 13 12 42 42 H 1.09000 * 109.46768 * 179.97438 * 15 13 12 43 43 H 1.00898 * 111.00132 * 329.80291 * 16 13 12 44 44 H 1.09001 * 109.47303 * 300.00394 * 17 16 13 45 45 H 1.09002 * 109.47246 * 60.00049 * 17 16 13 46 46 H 0.97003 * 119.99786 * 359.97438 * 20 18 17 47 47 H 0.96991 * 120.00023 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2986 2.1754 -1.0686 5 7 2.6900 3.2805 -0.7834 6 6 2.7555 3.4643 0.5020 7 6 2.3072 2.1970 1.0994 8 6 2.1843 1.8462 2.5258 9 8 1.6984 0.7796 2.8499 10 7 2.6106 2.7075 3.4707 11 6 3.0902 4.0375 3.0868 12 6 2.5944 2.3138 4.8817 13 6 3.8665 1.5283 5.2067 14 1 3.8887 0.6124 4.6163 15 6 3.8820 1.1761 6.6956 16 7 5.0430 2.3470 4.8850 17 6 6.2074 1.5017 4.5888 18 6 7.3920 2.3746 4.2635 19 8 7.2777 3.5820 4.2776 20 7 8.5785 1.8136 3.9570 21 6 9.6564 2.6077 3.6616 22 1 9.5545 3.6828 3.6741 23 6 10.8798 2.0292 3.3461 24 7 11.0037 0.7211 3.3313 25 14 12.3485 3.1113 2.9443 26 1 12.6533 3.9837 4.1067 27 1 13.5254 2.2568 2.6440 28 1 12.0343 3.9533 1.7621 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 3.0715 4.3574 1.0208 35 1 2.3092 4.5599 2.5342 36 1 3.3431 4.6050 3.9824 37 1 3.9750 3.9372 2.4582 38 1 2.5480 3.2053 5.5072 39 1 1.7222 1.6890 5.0746 40 1 3.8597 2.0921 7.2858 41 1 3.0089 0.5687 6.9343 42 1 4.7881 0.6161 6.9270 43 1 4.8482 2.9752 4.1198 44 1 6.4382 0.8840 5.4566 45 1 5.9837 0.8609 3.7358 46 1 8.6701 0.8480 3.9461 47 1 11.8578 0.3173 3.1114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331576583.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:52 Heat of formation + Delta-G solvation = 0.170350 kcal Electronic energy + Delta-G solvation = -30104.571271 eV Core-core repulsion = 25905.387535 eV Total energy + Delta-G solvation = -4199.183737 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.13047 -40.21782 -38.35954 -37.00916 -35.20387 -34.91083 -33.96200 -33.62465 -31.39595 -31.01592 -30.47980 -27.78966 -27.02055 -26.30306 -24.44224 -24.20768 -23.73970 -22.07061 -20.48658 -19.47241 -19.24163 -17.96610 -17.91506 -17.82454 -16.94817 -16.56431 -16.40845 -15.56714 -15.31047 -14.89886 -14.77410 -14.54622 -14.45749 -13.98100 -13.91463 -13.82247 -13.57446 -13.19211 -12.92352 -12.79289 -12.59432 -12.38598 -12.14148 -11.90318 -11.85388 -11.77394 -11.69739 -11.63574 -11.41550 -11.19837 -11.08323 -10.86665 -10.60388 -10.45461 -10.25044 -10.22583 -9.70504 -9.51282 -8.92377 -8.46057 -8.08918 -7.97284 -6.42639 -3.83709 0.82564 1.59864 2.48011 2.77591 2.95081 3.19011 3.24879 3.29026 3.89226 3.99330 4.05836 4.07939 4.26488 4.34082 4.55081 4.79551 4.83387 4.84747 4.87703 5.00285 5.06733 5.11674 5.22323 5.24528 5.33752 5.38632 5.48471 5.52471 5.54925 5.57515 5.61716 5.73054 5.76543 5.83729 5.87992 5.99178 6.02712 6.15307 6.25430 6.39820 7.01201 7.22613 7.53700 7.65910 7.84439 7.96558 8.04663 8.59749 9.16258 9.52943 10.04016 10.75027 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010866 B = 0.003056 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.154734 B = 9160.011839 C =10447.581780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.049 4.049 3 C 0.054 3.946 4 O 0.093 5.907 5 N -0.354 5.354 6 C 0.012 3.988 7 C -0.264 4.264 8 C 0.600 3.400 9 O -0.530 6.530 10 N -0.608 5.608 11 C 0.060 3.940 12 C 0.117 3.883 13 C 0.064 3.936 14 H 0.048 0.952 15 C -0.136 4.136 16 N -0.663 5.663 17 C 0.050 3.950 18 C 0.441 3.559 19 O -0.585 6.585 20 N -0.562 5.562 21 C -0.301 4.301 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.931 3.069 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.212 0.788 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.346 0.654 44 H 0.086 0.914 45 H 0.039 0.961 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.589 -1.179 -2.576 21.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.087 4.087 3 C -0.011 4.011 4 O 0.033 5.967 5 N -0.059 5.059 6 C -0.171 4.171 7 C -0.271 4.271 8 C 0.389 3.611 9 O -0.408 6.408 10 N -0.341 5.341 11 C -0.083 4.083 12 C -0.006 4.006 13 C -0.048 4.048 14 H 0.066 0.934 15 C -0.195 4.195 16 N -0.298 5.298 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.470 6.470 20 N -0.199 5.199 21 C -0.430 4.430 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.758 3.242 26 H -0.198 1.198 27 H -0.209 1.209 28 H -0.199 1.199 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.131 0.869 34 H 0.229 0.771 35 H 0.087 0.913 36 H 0.112 0.888 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.167 0.833 44 H 0.104 0.896 45 H 0.057 0.943 46 H 0.225 0.775 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -21.308 -0.189 -2.868 21.501 hybrid contribution 0.856 -0.520 -0.325 1.053 sum -20.452 -0.708 -3.193 20.712 Atomic orbital electron populations 1.21695 0.92791 1.03045 1.02570 1.20381 0.97235 0.85463 1.05630 1.24920 0.94850 0.96099 0.85217 1.84583 1.61056 1.17699 1.33340 1.73698 1.16020 0.98402 1.17784 1.27200 1.00550 0.99871 0.89440 1.22005 1.14301 0.95613 0.95227 1.16805 0.77553 0.83572 0.83185 1.90776 1.44751 1.23232 1.82072 1.47620 1.64041 1.15335 1.07082 1.22421 0.99337 0.83286 1.03212 1.21846 0.98374 1.00795 0.79555 1.21961 0.89870 0.95490 0.97437 0.93441 1.21719 1.01528 1.01701 0.94515 1.60266 1.02755 1.19466 1.47282 1.21715 0.91303 0.95084 1.00129 1.19792 0.84305 0.88899 0.84362 1.90498 1.84314 1.14527 1.57630 1.41861 1.08272 1.09484 1.60264 1.19648 0.87440 0.92407 1.43514 0.87974 1.25267 0.99110 0.96095 0.97415 1.69603 1.26613 1.09175 1.48857 0.85922 0.79925 0.79256 0.79143 1.19849 1.20950 1.19914 0.91765 0.92375 0.90937 0.89063 0.86940 0.77138 0.91332 0.88803 0.91019 0.89025 0.89155 0.91765 0.92621 0.92217 0.83276 0.89560 0.94273 0.77475 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.89 37.15 0.37 -0.69 16 2 C -0.05 -0.42 6.01 -27.89 -0.17 -0.59 16 3 C 0.05 0.60 6.80 -34.63 -0.24 0.36 16 4 O 0.09 1.11 11.06 18.63 0.21 1.32 16 5 N -0.35 -4.53 12.01 31.80 0.38 -4.15 16 6 C 0.01 0.13 10.24 -14.73 -0.15 -0.02 16 7 C -0.26 -3.17 6.30 -102.89 -0.65 -3.81 16 8 C 0.60 7.61 7.62 -12.53 -0.10 7.52 16 9 O -0.53 -7.62 14.96 5.27 0.08 -7.54 16 10 N -0.61 -6.74 2.52 -182.85 -0.46 -7.20 16 11 C 0.06 0.55 6.81 59.85 0.41 0.96 16 12 C 0.12 1.24 5.06 -4.04 -0.02 1.22 16 13 C 0.06 0.81 2.89 -67.71 -0.20 0.62 16 14 H 0.05 0.68 7.79 -51.93 -0.40 0.28 16 15 C -0.14 -1.53 9.42 37.16 0.35 -1.18 16 16 N -0.66 -10.64 5.94 -107.99 -0.64 -11.28 16 17 C 0.05 0.92 5.96 -4.98 -0.03 0.89 16 18 C 0.44 10.47 7.82 -10.99 -0.09 10.39 16 19 O -0.59 -15.63 15.78 5.55 0.09 -15.54 16 20 N -0.56 -14.40 5.29 -10.96 -0.06 -14.46 16 21 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 22 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 23 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 24 N -0.90 -24.70 13.05 55.50 0.72 -23.97 16 25 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.11 1.11 6.90 -51.93 -0.36 0.75 16 34 H 0.21 1.83 4.82 -52.48 -0.25 1.57 16 35 H 0.07 0.48 6.53 -51.93 -0.34 0.14 16 36 H 0.09 0.80 7.64 -51.93 -0.40 0.41 16 37 H 0.07 0.74 6.31 -51.93 -0.33 0.41 16 38 H 0.09 0.84 7.78 -51.92 -0.40 0.43 16 39 H 0.09 0.94 7.53 -51.93 -0.39 0.55 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.72 7.51 -51.93 -0.39 0.33 16 43 H 0.35 5.61 5.21 -39.29 -0.20 5.40 16 44 H 0.09 1.47 7.49 -51.93 -0.39 1.08 16 45 H 0.04 0.69 8.05 -51.93 -0.42 0.27 16 46 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 47 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 387.27 15.07 5.84 5.84 Total: -1.00 -33.41 387.27 -6.26 -39.67 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -6.65 Total: 13.60 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -0.75 Total: 7.62 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: -0.05 Total: -61.07 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: 0.37 Total: -21.76 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.41 -6.26 -39.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331576583.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.838 kcal (2) G-P(sol) polarization free energy of solvation -33.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds