Wall clock time and date at job start Tue Mar 31 2020 22:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50698 * 109.47305 * 2 1 4 4 O 1.33500 * 126.82998 * 270.02447 * 3 2 1 5 5 N 1.20657 * 113.15910 * 180.02562 * 4 3 2 6 6 C 1.30013 * 112.29804 * 359.97438 * 5 4 3 7 7 C 1.37355 * 126.83349 * 90.02273 * 3 2 1 8 8 C 1.47409 * 128.56378 * 0.02562 * 7 3 2 9 9 O 1.21610 * 119.99307 * 354.37858 * 8 7 3 10 10 N 1.34772 * 120.00112 * 174.37109 * 8 7 3 11 11 C 1.46498 * 120.00130 * 5.21078 * 10 8 7 12 12 C 1.46500 * 119.99788 * 185.20805 * 10 8 7 13 13 C 1.53000 * 109.47190 * 84.17853 * 12 10 8 14 14 H 1.09001 * 109.46707 * 297.26106 * 13 12 10 15 15 C 1.53002 * 109.47049 * 177.25878 * 13 12 10 16 16 N 1.46897 * 109.47132 * 57.25976 * 13 12 10 17 17 C 1.46898 * 110.99980 * 205.84692 * 16 13 12 18 18 C 1.50699 * 109.47273 * 179.97438 * 17 16 13 19 19 O 1.21294 * 120.00033 * 0.02562 * 18 17 16 20 20 N 1.34776 * 120.00293 * 180.02562 * 18 17 16 21 21 C 1.37095 * 120.00290 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99707 * 359.97438 * 21 20 18 23 23 C 1.38953 * 120.00144 * 179.97438 * 21 20 18 24 24 N 1.31412 * 119.99936 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99871 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47113 * 60.00180 * 25 23 21 27 27 H 1.48504 * 109.46710 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.46989 * 299.99616 * 25 23 21 29 29 H 1.09000 * 109.47234 * 300.00163 * 1 2 3 30 30 H 1.09000 * 109.47101 * 60.00337 * 1 2 3 31 31 H 1.09001 * 109.47572 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47234 * 239.99837 * 2 1 3 33 33 H 1.09000 * 109.47101 * 119.99663 * 2 1 3 34 34 H 1.08007 * 127.33042 * 180.02562 * 6 5 4 35 35 H 1.09004 * 109.47420 * 57.18165 * 11 10 8 36 36 H 1.08999 * 109.47159 * 177.18152 * 11 10 8 37 37 H 1.09003 * 109.47154 * 297.18651 * 11 10 8 38 38 H 1.09008 * 109.46967 * 204.17757 * 12 10 8 39 39 H 1.09003 * 109.47188 * 324.17229 * 12 10 8 40 40 H 1.08995 * 109.46881 * 300.00291 * 15 13 12 41 41 H 1.09003 * 109.46759 * 59.99725 * 15 13 12 42 42 H 1.09000 * 109.46768 * 179.97438 * 15 13 12 43 43 H 1.00898 * 111.00132 * 329.80291 * 16 13 12 44 44 H 1.09001 * 109.47303 * 300.00394 * 17 16 13 45 45 H 1.09002 * 109.47246 * 60.00049 * 17 16 13 46 46 H 0.97003 * 119.99786 * 359.97438 * 20 18 17 47 47 H 0.96991 * 120.00023 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2986 2.1754 -1.0686 5 7 2.6900 3.2805 -0.7834 6 6 2.7555 3.4643 0.5020 7 6 2.3072 2.1970 1.0994 8 6 2.1843 1.8462 2.5258 9 8 1.6984 0.7796 2.8499 10 7 2.6106 2.7075 3.4707 11 6 3.0902 4.0375 3.0868 12 6 2.5944 2.3138 4.8817 13 6 3.8665 1.5283 5.2067 14 1 3.8887 0.6124 4.6163 15 6 3.8820 1.1761 6.6956 16 7 5.0430 2.3470 4.8850 17 6 6.2074 1.5017 4.5888 18 6 7.3920 2.3746 4.2635 19 8 7.2777 3.5820 4.2776 20 7 8.5785 1.8136 3.9570 21 6 9.6564 2.6077 3.6616 22 1 9.5545 3.6828 3.6741 23 6 10.8798 2.0292 3.3461 24 7 11.0037 0.7211 3.3313 25 14 12.3485 3.1113 2.9443 26 1 12.6533 3.9837 4.1067 27 1 13.5254 2.2568 2.6440 28 1 12.0343 3.9533 1.7621 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 3.0715 4.3574 1.0208 35 1 2.3092 4.5599 2.5342 36 1 3.3431 4.6050 3.9824 37 1 3.9750 3.9372 2.4582 38 1 2.5480 3.2053 5.5072 39 1 1.7222 1.6890 5.0746 40 1 3.8597 2.0921 7.2858 41 1 3.0089 0.5687 6.9343 42 1 4.7881 0.6161 6.9270 43 1 4.8482 2.9752 4.1198 44 1 6.4382 0.8840 5.4566 45 1 5.9837 0.8609 3.7358 46 1 8.6701 0.8480 3.9461 47 1 11.8578 0.3173 3.1114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331576583.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:52 Heat of formation + Delta-G solvation = -23.360886 kcal Electronic energy + Delta-G solvation = -30105.591662 eV Core-core repulsion = 25905.387535 eV Total energy + Delta-G solvation = -4200.204128 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -46.03615 -41.18143 -40.15707 -38.18943 -36.29193 -35.87399 -35.69441 -34.61028 -33.31461 -32.32093 -31.31855 -28.63367 -28.21634 -27.67121 -25.92128 -25.01782 -24.88650 -22.95114 -21.50104 -21.15655 -20.34190 -19.93959 -18.88168 -18.74710 -17.98207 -17.78431 -17.36538 -17.14577 -16.56896 -16.35194 -16.12437 -15.70153 -15.49030 -15.37889 -15.19470 -14.85461 -14.63254 -14.29158 -14.09091 -13.83274 -13.60195 -13.50923 -13.37288 -13.25039 -12.97044 -12.89029 -12.75842 -12.63609 -12.57603 -12.47854 -12.44232 -12.13645 -11.97007 -11.89307 -11.51712 -11.51623 -11.22150 -10.60296 -10.37510 -10.04394 -9.81027 -9.41660 -8.48419 -5.97631 -0.06571 0.69558 1.38372 1.40437 1.51515 1.61406 1.91337 2.00981 2.02556 2.27116 2.86691 3.14296 3.18427 3.21913 3.42077 3.48541 3.73814 3.88734 4.05807 4.08904 4.21070 4.22280 4.23269 4.32497 4.37192 4.38470 4.46819 4.51782 4.59105 4.65812 4.76692 4.77787 4.79394 4.94722 4.95387 5.04821 5.06598 5.26569 5.30530 5.38731 5.48197 5.84438 6.03738 6.14984 6.39240 6.56469 6.91013 7.06929 7.09431 7.52433 8.06497 8.68902 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010866 B = 0.003056 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.154734 B = 9160.011839 C =10447.581780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.049 4.049 3 C 0.057 3.943 4 O 0.087 5.913 5 N -0.378 5.378 6 C 0.018 3.982 7 C -0.284 4.284 8 C 0.596 3.404 9 O -0.553 6.553 10 N -0.606 5.606 11 C 0.056 3.944 12 C 0.119 3.881 13 C 0.066 3.934 14 H 0.033 0.967 15 C -0.132 4.132 16 N -0.668 5.668 17 C 0.064 3.936 18 C 0.440 3.560 19 O -0.616 6.616 20 N -0.573 5.573 21 C -0.334 4.334 22 H 0.082 0.918 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.270 1.270 27 H -0.271 1.271 28 H -0.271 1.271 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.100 0.900 34 H 0.233 0.767 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.058 0.942 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.048 0.952 43 H 0.344 0.656 44 H 0.102 0.898 45 H 0.048 0.952 46 H 0.395 0.605 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.210 -1.167 -2.396 22.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.087 4.087 3 C -0.007 4.007 4 O 0.029 5.971 5 N -0.085 5.085 6 C -0.164 4.164 7 C -0.291 4.291 8 C 0.386 3.614 9 O -0.433 6.433 10 N -0.338 5.338 11 C -0.086 4.086 12 C -0.003 4.003 13 C -0.044 4.044 14 H 0.051 0.949 15 C -0.191 4.191 16 N -0.303 5.303 17 C -0.068 4.068 18 C 0.227 3.773 19 O -0.503 6.503 20 N -0.210 5.210 21 C -0.464 4.464 22 H 0.100 0.900 23 C -0.213 4.213 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.195 1.195 27 H -0.196 1.196 28 H -0.196 1.196 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.131 0.869 33 H 0.119 0.881 34 H 0.249 0.751 35 H 0.111 0.889 36 H 0.121 0.879 37 H 0.077 0.923 38 H 0.130 0.870 39 H 0.115 0.885 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.067 0.933 43 H 0.165 0.835 44 H 0.120 0.880 45 H 0.065 0.935 46 H 0.228 0.772 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -21.947 -0.193 -2.683 22.111 hybrid contribution 0.997 -0.537 -0.357 1.187 sum -20.950 -0.730 -3.040 21.182 Atomic orbital electron populations 1.21666 0.91642 1.04096 1.02099 1.20513 0.98089 0.84053 1.06064 1.25414 0.93650 0.96800 0.84862 1.84561 1.61245 1.17666 1.33587 1.73683 1.17262 0.99003 1.18551 1.27584 0.99448 1.00330 0.89066 1.22106 1.15486 0.96275 0.95273 1.16936 0.77411 0.83489 0.83603 1.90755 1.45959 1.24136 1.82425 1.47694 1.63328 1.15713 1.07060 1.22551 0.99644 0.82666 1.03774 1.21889 0.97245 1.01550 0.79608 1.22043 0.89466 0.94701 0.98238 0.94936 1.21701 1.02056 1.02115 0.93185 1.60319 1.03231 1.19682 1.47066 1.21548 0.89949 0.94331 1.01000 1.20704 0.84993 0.89120 0.82484 1.90467 1.84997 1.16273 1.58521 1.41940 1.08638 1.09418 1.60979 1.19655 0.89059 0.91934 1.45704 0.90009 1.26071 1.01192 0.97458 0.96584 1.69671 1.27516 1.10289 1.48749 0.84984 0.76748 0.77721 0.78878 1.19510 1.19576 1.19621 0.93426 0.91570 0.89141 0.86885 0.88132 0.75102 0.88874 0.87948 0.92321 0.87004 0.88509 0.91368 0.90415 0.93286 0.83498 0.88042 0.93454 0.77200 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.89 71.98 0.71 -1.17 16 2 C -0.05 -0.81 6.01 29.84 0.18 -0.64 16 3 C 0.06 1.26 6.80 25.48 0.17 1.43 16 4 O 0.09 2.05 11.06 76.93 0.85 2.90 16 5 N -0.38 -9.56 12.01 -54.20 -0.65 -10.21 16 6 C 0.02 0.39 10.24 87.29 0.89 1.28 16 7 C -0.28 -6.70 6.30 -18.74 -0.12 -6.82 16 8 C 0.60 14.78 7.62 86.66 0.66 15.44 16 9 O -0.55 -15.67 14.96 -4.06 -0.06 -15.73 16 10 N -0.61 -12.70 2.52 -850.67 -2.14 -14.84 16 11 C 0.06 0.95 6.81 127.77 0.87 1.82 16 12 C 0.12 2.32 5.06 86.38 0.44 2.76 16 13 C 0.07 1.60 2.89 44.92 0.13 1.73 16 14 H 0.03 0.90 7.79 -2.39 -0.02 0.88 16 15 C -0.13 -2.72 9.42 71.98 0.68 -2.04 16 16 N -0.67 -20.79 5.94 -495.58 -2.94 -23.74 16 17 C 0.06 2.32 5.96 85.56 0.51 2.83 16 18 C 0.44 21.06 7.82 87.66 0.69 21.75 16 19 O -0.62 -33.33 15.78 -3.07 -0.05 -33.38 16 20 N -0.57 -29.79 5.29 -306.98 -1.62 -31.41 16 21 C -0.33 -19.01 9.68 84.04 0.81 -18.20 16 22 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 23 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 24 N -0.92 -50.24 13.05 21.66 0.28 -49.96 16 25 Si 0.99 42.97 29.55 68.60 2.03 44.99 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 27 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 28 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.10 1.96 6.90 -2.39 -0.02 1.94 16 34 H 0.23 3.77 4.82 -2.91 -0.01 3.75 16 35 H 0.09 1.12 6.53 -2.38 -0.02 1.10 16 36 H 0.10 1.58 7.64 -2.39 -0.02 1.56 16 37 H 0.06 1.17 6.31 -2.39 -0.02 1.16 16 38 H 0.11 1.75 7.78 -2.38 -0.02 1.73 16 39 H 0.10 1.82 7.53 -2.39 -0.02 1.80 16 40 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.05 1.11 7.51 -2.39 -0.02 1.09 16 43 H 0.34 10.89 5.21 -89.70 -0.47 10.42 16 44 H 0.10 3.37 7.49 -2.39 -0.02 3.35 16 45 H 0.05 1.65 8.05 -2.39 -0.02 1.63 16 46 H 0.39 19.75 7.90 -92.71 -0.73 19.02 16 47 H 0.28 14.21 8.31 -92.72 -0.77 13.44 16 Total: -1.00 -71.92 387.27 2.61 -69.31 By element: Atomic # 1 Polarization: 42.31 SS G_CDS: -0.18 Total: 42.14 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: 7.09 Total: 19.92 kcal Atomic # 7 Polarization: -123.08 SS G_CDS: -7.08 Total: -130.16 kcal Atomic # 8 Polarization: -46.95 SS G_CDS: 0.74 Total: -46.20 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -71.92 2.61 -69.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331576583.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.948 kcal (2) G-P(sol) polarization free energy of solvation -71.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds