Wall clock time and date at job start Tue Mar 31 2020 20:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29932 * 125.38270 * 2 1 4 4 C 1.36062 * 108.48166 * 180.02562 * 3 2 1 5 5 C 1.47418 * 126.44971 * 180.02562 * 4 3 2 6 6 O 1.21621 * 119.99827 * 174.78875 * 5 4 3 7 7 N 1.34772 * 120.00044 * 354.78949 * 5 4 3 8 8 C 1.46501 * 120.00240 * 2.88351 * 7 5 4 9 9 C 1.46502 * 119.99769 * 182.88497 * 7 5 4 10 10 C 1.53004 * 109.47069 * 90.00267 * 9 7 5 11 11 H 1.08998 * 109.47064 * 64.99913 * 10 9 7 12 12 C 1.53000 * 109.47043 * 184.99758 * 10 9 7 13 13 N 1.46904 * 109.46731 * 304.99715 * 10 9 7 14 14 C 1.46904 * 110.99695 * 155.00277 * 13 10 9 15 15 C 1.50696 * 109.46902 * 179.97438 * 14 13 10 16 16 O 1.21293 * 120.00546 * 0.02562 * 15 14 13 17 17 N 1.34784 * 119.99773 * 179.97438 * 15 14 13 18 18 C 1.37101 * 119.99642 * 180.02562 * 17 15 14 19 19 H 1.08002 * 120.00071 * 0.02562 * 18 17 15 20 20 C 1.38950 * 119.99571 * 180.02562 * 18 17 15 21 21 N 1.31416 * 119.99652 * 180.02562 * 20 18 17 22 22 Si 1.86793 * 120.00134 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47475 * 90.00381 * 22 20 18 24 24 H 1.48511 * 109.47096 * 210.00413 * 22 20 18 25 25 H 1.48499 * 109.47343 * 330.00043 * 22 20 18 26 26 C 1.36095 * 107.10033 * 359.97438 * 4 3 2 27 27 C 1.50697 * 126.52366 * 180.26219 * 26 4 3 28 28 O 1.34055 * 125.37565 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47774 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47219 * 300.00322 * 1 2 3 31 31 H 1.08997 * 109.47604 * 60.00030 * 1 2 3 32 32 H 1.09000 * 109.46401 * 83.87337 * 8 7 5 33 33 H 1.08993 * 109.47093 * 203.87537 * 8 7 5 34 34 H 1.08994 * 109.46989 * 323.88003 * 8 7 5 35 35 H 1.09002 * 109.46895 * 209.99462 * 9 7 5 36 36 H 1.08996 * 109.47466 * 330.00167 * 9 7 5 37 37 H 1.09002 * 109.47179 * 179.97438 * 12 10 9 38 38 H 1.08996 * 109.47437 * 299.99834 * 12 10 9 39 39 H 1.08998 * 109.47064 * 60.00155 * 12 10 9 40 40 H 1.00896 * 111.00085 * 31.04556 * 13 10 9 41 41 H 1.09006 * 109.47201 * 299.99712 * 14 13 10 42 42 H 1.09002 * 109.47468 * 59.99929 * 14 13 10 43 43 H 0.96998 * 120.00011 * 0.02562 * 17 15 14 44 44 H 0.96999 * 119.99727 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.47185 * 179.71712 * 27 26 4 46 46 H 1.08998 * 109.47460 * 299.71701 * 27 26 4 47 47 H 1.09000 * 109.47208 * 59.71694 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2593 1.0593 0.0000 4 6 3.5611 0.6638 -0.0006 5 6 4.7439 1.5437 -0.0003 6 8 5.8579 1.0651 0.0948 7 7 4.5907 2.8786 -0.1053 8 6 3.2469 3.4600 -0.1562 9 6 5.7680 3.7482 -0.1686 10 6 6.1835 3.9385 -1.6288 11 1 5.3994 4.4753 -2.1627 12 6 7.4836 4.7429 -1.6884 13 7 6.3909 2.6254 -2.2539 14 6 6.2044 2.6998 -3.7092 15 6 6.4253 1.3374 -4.3142 16 8 6.7097 0.3968 -3.6031 17 7 6.3059 1.1638 -5.6454 18 6 6.5064 -0.0758 -6.1958 19 1 6.7597 -0.9132 -5.5625 20 6 6.3838 -0.2546 -7.5682 21 7 6.5755 -1.4429 -8.0957 22 14 5.9451 1.1937 -8.6633 23 1 7.1889 1.8689 -9.1131 24 1 5.1895 0.7088 -9.8463 25 1 5.1079 2.1548 -7.9013 26 6 3.5659 -0.6972 -0.0003 27 6 4.7800 -1.5898 0.0047 28 8 2.2830 -1.0931 -0.0005 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 2.8660 3.5835 0.8576 33 1 3.2897 4.4311 -0.6492 34 1 2.5855 2.7978 -0.7146 35 1 5.5281 4.7169 0.2700 36 1 6.5876 3.2912 0.3857 37 1 7.7799 4.8780 -2.7286 38 1 7.3298 5.7171 -1.2246 39 1 8.2678 4.2060 -1.1545 40 1 5.7830 1.9308 -1.8464 41 1 5.1907 3.0352 -3.9289 42 1 6.9201 3.4050 -4.1317 43 1 6.0781 1.9159 -6.2141 44 1 6.4895 -1.5678 -9.0538 45 1 4.4640 -2.6330 0.0087 46 1 5.3781 -1.3948 -0.8853 47 1 5.3761 -1.3874 0.8946 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331595336.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:25 Heat of formation + Delta-G solvation = -56.996751 kcal Electronic energy + Delta-G solvation = -30638.289670 eV Core-core repulsion = 26436.626982 eV Total energy + Delta-G solvation = -4201.662688 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.55766 -41.21108 -40.25046 -37.95426 -36.49371 -36.04282 -35.53246 -34.10933 -33.78744 -32.26897 -31.00916 -28.55225 -28.24263 -27.94886 -26.25873 -25.57447 -24.04316 -22.65285 -21.43457 -21.36125 -20.58782 -20.27302 -18.60131 -18.26283 -17.94341 -17.39051 -17.24740 -16.87250 -16.69655 -16.33297 -15.93441 -15.45969 -15.24639 -15.02036 -14.89619 -14.57761 -14.46559 -14.39914 -14.24788 -14.04092 -13.82559 -13.62559 -13.59516 -13.44097 -13.38396 -13.13683 -12.98921 -12.94405 -12.63346 -12.54761 -12.44634 -12.29020 -12.00105 -11.99216 -11.57557 -11.54934 -11.09910 -10.47019 -10.27933 -9.98253 -9.59973 -9.31318 -8.44046 -6.05079 -0.04284 0.90331 1.26754 1.32749 1.40178 1.41419 1.86311 1.90526 2.13126 2.20226 2.70131 2.82212 3.11267 3.35790 3.49044 3.59362 3.87701 4.05783 4.07626 4.19452 4.25192 4.26969 4.32378 4.44998 4.46221 4.47140 4.52355 4.60212 4.66288 4.67461 4.75525 4.82518 4.86824 4.95263 4.99456 5.07102 5.08593 5.27432 5.42327 5.50411 5.58819 5.88165 6.07578 6.14574 6.38253 6.41354 6.56999 6.84460 7.00231 7.35220 7.92508 8.73821 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009499 B = 0.003848 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2947.076433 B = 7275.525090 C = 8817.985864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.191 3.809 3 N -0.466 5.466 4 C -0.098 4.098 5 C 0.584 3.416 6 O -0.543 6.543 7 N -0.606 5.606 8 C 0.075 3.925 9 C 0.113 3.887 10 C 0.064 3.936 11 H 0.062 0.938 12 C -0.132 4.132 13 N -0.684 5.684 14 C 0.060 3.940 15 C 0.444 3.556 16 O -0.609 6.609 17 N -0.590 5.590 18 C -0.330 4.330 19 H 0.053 0.947 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.965 3.035 23 H -0.255 1.255 24 H -0.271 1.271 25 H -0.234 1.234 26 C 0.032 3.968 27 C -0.066 4.066 28 O -0.201 6.201 29 H 0.106 0.894 30 H 0.121 0.879 31 H 0.112 0.888 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.128 0.872 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.090 0.910 39 H 0.047 0.953 40 H 0.339 0.661 41 H 0.065 0.935 42 H 0.116 0.884 43 H 0.389 0.611 44 H 0.280 0.720 45 H 0.100 0.900 46 H 0.074 0.926 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.718 15.360 17.048 27.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.017 4.017 3 N -0.196 5.196 4 C -0.217 4.217 5 C 0.372 3.628 6 O -0.420 6.420 7 N -0.338 5.338 8 C -0.066 4.066 9 C -0.009 4.009 10 C -0.046 4.046 11 H 0.079 0.921 12 C -0.191 4.191 13 N -0.321 5.321 14 C -0.073 4.073 15 C 0.232 3.768 16 O -0.493 6.493 17 N -0.232 5.232 18 C -0.459 4.459 19 H 0.071 0.929 20 C -0.212 4.212 21 N -0.574 5.574 22 Si 0.785 3.215 23 H -0.180 1.180 24 H -0.196 1.196 25 H -0.158 1.158 26 C -0.024 4.024 27 C -0.122 4.122 28 O -0.089 6.089 29 H 0.125 0.875 30 H 0.139 0.861 31 H 0.131 0.869 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.146 0.854 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.108 0.892 39 H 0.066 0.934 40 H 0.162 0.838 41 H 0.083 0.917 42 H 0.133 0.867 43 H 0.224 0.776 44 H 0.089 0.911 45 H 0.119 0.881 46 H 0.092 0.908 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.502 15.032 17.402 26.667 hybrid contribution -0.521 -0.788 -1.088 1.441 sum -14.024 14.245 16.314 25.802 Atomic orbital electron populations 1.20636 0.77053 1.06668 1.06767 1.27571 0.98312 0.77683 0.98174 1.70859 0.99748 1.29543 1.19480 1.21480 0.92822 0.92517 1.14860 1.17095 0.86194 0.82716 0.76771 1.90893 1.25358 1.75310 1.50455 1.47785 1.09478 1.04776 1.71775 1.22285 0.81286 0.99834 1.03216 1.21938 0.87336 0.95525 0.96104 1.22152 0.98568 0.89262 0.94630 0.92054 1.21730 0.95575 0.99408 1.02360 1.60243 1.61775 1.08376 1.01737 1.21704 1.01797 0.93402 0.90349 1.20985 0.81855 0.91803 0.82162 1.90559 1.52589 1.44800 1.61336 1.42013 1.64516 1.09760 1.06867 1.19001 1.47195 0.87216 0.92501 0.92910 1.26110 0.96488 1.00853 0.97739 1.69806 1.49505 1.24521 1.13522 0.85362 0.79883 0.77948 0.78302 1.17964 1.19626 1.15784 1.23945 0.84554 0.94873 0.99049 1.20429 0.89054 0.98124 1.04637 1.84353 1.15978 1.38684 1.69842 0.87545 0.86105 0.86946 0.91688 0.89146 0.89479 0.85371 0.90800 0.92640 0.89152 0.93360 0.83815 0.91711 0.86658 0.77557 0.91057 0.88075 0.90762 0.87707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.52 10.51 71.23 0.75 0.23 16 2 C 0.19 4.22 8.30 88.39 0.73 4.95 16 3 N -0.47 -12.13 7.85 -293.04 -2.30 -14.43 16 4 C -0.10 -3.14 6.67 40.41 0.27 -2.87 16 5 C 0.58 19.72 5.93 86.66 0.51 20.23 16 6 O -0.54 -21.94 13.96 -4.10 -0.06 -21.99 16 7 N -0.61 -15.59 2.66 -850.67 -2.26 -17.86 16 8 C 0.08 1.43 9.59 127.77 1.23 2.66 16 9 C 0.11 2.50 5.18 86.38 0.45 2.95 16 10 C 0.06 1.55 2.95 44.92 0.13 1.68 16 11 H 0.06 1.26 7.80 -2.39 -0.02 1.24 16 12 C -0.13 -2.69 9.42 71.98 0.68 -2.01 16 13 N -0.68 -24.75 5.86 -495.55 -2.90 -27.65 16 14 C 0.06 2.16 5.96 85.55 0.51 2.67 16 15 C 0.44 22.26 7.82 87.65 0.69 22.94 16 16 O -0.61 -37.18 15.78 -3.07 -0.05 -37.23 16 17 N -0.59 -29.77 5.09 -306.97 -1.56 -31.33 16 18 C -0.33 -20.22 10.16 84.04 0.85 -19.37 16 19 H 0.05 3.85 7.39 -2.91 -0.02 3.83 16 20 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 21 N -0.93 -57.49 13.96 21.66 0.30 -57.19 16 22 Si 0.97 39.94 27.73 68.60 1.90 41.84 16 23 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 24 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 25 H -0.23 -8.27 6.52 99.48 0.65 -7.62 16 26 C 0.03 1.02 7.44 25.19 0.19 1.21 16 27 C -0.07 -1.98 9.15 71.24 0.65 -1.33 16 28 O -0.20 -5.41 10.73 0.36 0.00 -5.41 16 29 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.12 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.09 1.19 8.03 -2.39 -0.02 1.17 16 34 H 0.09 1.97 5.32 -2.39 -0.01 1.95 16 35 H 0.13 1.69 8.07 -2.39 -0.02 1.67 16 36 H 0.07 1.99 7.38 -2.39 -0.02 1.97 16 37 H 0.05 1.16 7.45 -2.39 -0.02 1.14 16 38 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.34 14.02 4.26 -89.70 -0.38 13.63 16 41 H 0.07 1.99 8.06 -2.38 -0.02 1.98 16 42 H 0.12 3.48 7.44 -2.39 -0.02 3.46 16 43 H 0.39 16.30 5.76 -92.71 -0.53 15.77 16 44 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 45 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 46 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 47 H 0.10 2.94 8.00 -2.39 -0.02 2.92 16 Total: -1.00 -89.69 387.33 1.22 -88.47 By element: Atomic # 1 Polarization: 49.10 SS G_CDS: 0.04 Total: 49.13 kcal Atomic # 6 Polarization: 25.54 SS G_CDS: 8.11 Total: 33.65 kcal Atomic # 7 Polarization: -139.73 SS G_CDS: -8.73 Total: -148.46 kcal Atomic # 8 Polarization: -64.53 SS G_CDS: -0.10 Total: -64.63 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 1.90 Total: 41.84 kcal Total: -89.69 1.22 -88.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331595336.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.471 kcal (2) G-P(sol) polarization free energy of solvation -89.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds