Wall clock time and date at job start Tue Mar 31 2020 22:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.46957 * 2 1 4 4 N 1.30832 * 125.86389 * 270.19533 * 3 2 1 5 5 N 1.40061 * 108.34200 * 180.23979 * 4 3 2 6 6 C 1.46506 * 126.03507 * 179.76228 * 5 4 3 7 7 C 1.35132 * 107.93114 * 359.74136 * 5 4 3 8 8 O 1.35760 * 126.19422 * 180.02562 * 7 5 4 9 9 C 1.42890 * 117.00515 * 274.91205 * 8 7 5 10 10 C 1.35950 * 107.61284 * 0.02562 * 7 5 4 11 11 C 1.50694 * 126.08409 * 179.97438 * 10 7 5 12 12 N 1.46498 * 109.47168 * 90.02103 * 11 10 7 13 13 C 1.34778 * 119.99876 * 180.02562 * 12 11 10 14 14 O 1.21350 * 120.00256 * 359.97438 * 13 12 11 15 15 C 1.49445 * 120.00125 * 180.02562 * 13 12 11 16 16 O 1.21348 * 120.00084 * 359.97438 * 15 13 12 17 17 N 1.34778 * 120.00125 * 179.97438 * 15 13 12 18 18 C 1.46502 * 119.99712 * 180.02562 * 17 15 13 19 19 C 1.53008 * 109.46724 * 180.02562 * 18 17 15 20 20 C 1.50703 * 109.46940 * 180.02562 * 19 18 17 21 21 H 1.08002 * 120.00127 * 359.97438 * 20 19 18 22 22 C 1.37874 * 119.99995 * 180.02562 * 20 19 18 23 23 N 1.31513 * 119.99767 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00107 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47143 * 59.99836 * 24 22 20 26 26 H 1.48503 * 109.47183 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47270 * 299.99987 * 24 22 20 28 28 H 1.09000 * 109.46929 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47031 * 299.99291 * 1 2 3 30 30 H 1.08996 * 109.47350 * 60.00183 * 1 2 3 31 31 H 1.09000 * 109.47060 * 239.99961 * 2 1 3 32 32 H 1.08999 * 109.47176 * 120.00560 * 2 1 3 33 33 H 1.08994 * 109.47269 * 274.14461 * 6 5 4 34 34 H 1.09002 * 109.47177 * 34.14441 * 6 5 4 35 35 H 1.08998 * 109.47332 * 154.14567 * 6 5 4 36 36 H 1.08999 * 109.47476 * 184.69249 * 9 8 7 37 37 H 1.09003 * 109.47120 * 304.69601 * 9 8 7 38 38 H 1.09001 * 109.46982 * 64.69374 * 9 8 7 39 39 H 1.09003 * 109.47059 * 330.01861 * 11 10 7 40 40 H 1.08998 * 109.46978 * 210.02764 * 11 10 7 41 41 H 0.96997 * 120.00442 * 0.02562 * 12 11 10 42 42 H 0.96999 * 120.00264 * 359.97438 * 17 15 13 43 43 H 1.09001 * 109.47248 * 299.99312 * 18 17 15 44 44 H 1.08992 * 109.47397 * 59.99986 * 18 17 15 45 45 H 1.09001 * 109.46682 * 299.99642 * 19 18 17 46 46 H 1.08992 * 109.47209 * 59.99853 * 19 18 17 47 47 H 0.97006 * 120.00318 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2844 2.1447 -1.0603 5 7 2.7361 3.4016 -0.6386 6 6 3.1325 4.5115 -1.5089 7 6 2.7414 3.4100 0.7127 8 8 3.1141 4.4463 1.5065 9 6 4.5077 4.5737 1.7955 10 6 2.3059 2.1928 1.1333 11 6 2.1509 1.7520 2.5660 12 7 0.8003 2.0749 3.0328 13 6 0.4324 1.7708 4.2933 14 8 1.2196 1.2292 5.0413 15 6 -0.9455 2.0996 4.7694 16 8 -1.7329 2.6408 4.0213 17 7 -1.3136 1.7951 6.0297 18 6 -2.6646 2.1170 6.4961 19 6 -2.8216 1.6702 7.9511 20 6 -4.2115 2.0007 8.4308 21 1 -4.9125 2.4817 7.7648 22 6 -4.5877 1.6901 9.7203 23 7 -3.7339 1.1048 10.5315 24 14 -6.3103 2.1004 10.3152 25 1 -7.3070 1.3942 9.4706 26 1 -6.4628 1.6667 11.7273 27 1 -6.5308 3.5658 10.2204 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 4.1806 4.3991 -1.7865 34 1 2.5161 4.5064 -2.4079 35 1 2.9959 5.4547 -0.9800 36 1 4.6589 5.3885 2.5035 37 1 4.8756 3.6434 2.2281 38 1 5.0516 4.7865 0.8751 39 1 2.8831 2.2689 3.1864 40 1 2.3116 0.6761 2.6345 41 1 0.1709 2.5075 2.4349 42 1 -0.6844 1.3622 6.6276 43 1 -2.8260 3.1927 6.4274 44 1 -3.3961 1.5993 5.8758 45 1 -2.6600 0.5945 8.0203 46 1 -2.0900 2.1882 8.5712 47 1 -3.9987 0.8859 11.4387 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343287067.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:33 Heat of formation + Delta-G solvation = -39.495757 kcal Electronic energy + Delta-G solvation = -28923.564517 eV Core-core repulsion = 24722.660729 eV Total energy + Delta-G solvation = -4200.903788 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.04219 -40.23790 -38.59575 -38.19036 -35.80594 -35.05054 -34.27798 -32.81231 -32.18470 -30.61871 -29.76100 -28.46175 -27.11177 -26.15549 -25.00493 -23.76464 -22.95838 -21.20371 -20.97507 -20.18205 -20.05403 -18.43466 -17.75579 -16.94194 -16.65804 -16.51211 -16.16392 -15.66812 -15.42718 -15.16889 -15.05108 -14.69098 -14.59612 -14.40380 -14.27866 -14.10539 -13.58534 -13.45885 -13.24014 -13.20026 -12.83475 -12.58833 -12.43364 -12.29176 -12.21341 -11.73912 -11.57238 -11.41980 -11.22048 -11.20076 -11.02049 -10.66046 -10.54176 -10.34960 -9.76988 -9.54610 -9.44569 -9.23577 -9.21573 -8.83035 -8.63283 -8.38151 -6.07345 -4.10886 1.06414 1.71962 1.81274 2.01592 2.82194 3.10291 3.32593 3.36614 3.39654 3.53146 3.91235 4.07512 4.43169 4.46830 4.57860 4.63435 4.65141 4.69233 4.70722 4.85776 4.89829 4.92664 5.02856 5.07748 5.24036 5.29331 5.33563 5.44941 5.58783 5.69266 5.78058 5.82665 6.00229 6.17888 6.22668 6.24016 6.28864 6.65885 6.75326 6.94716 7.18676 7.22554 7.51504 7.61844 7.75567 7.90287 8.02349 8.26088 8.41496 8.94502 9.53713 11.04067 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019450 B = 0.001990 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.238549 B =14063.752028 C =14527.459408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C 0.108 3.892 4 N -0.275 5.275 5 N -0.379 5.379 6 C 0.097 3.903 7 C 0.278 3.722 8 O -0.306 6.306 9 C 0.031 3.969 10 C -0.261 4.261 11 C 0.206 3.794 12 N -0.698 5.698 13 C 0.508 3.492 14 O -0.523 6.523 15 C 0.497 3.503 16 O -0.533 6.533 17 N -0.687 5.687 18 C 0.119 3.881 19 C 0.011 3.989 20 C -0.523 4.523 21 H 0.059 0.941 22 C 0.059 3.941 23 N -0.892 5.892 24 Si 0.898 3.102 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.276 1.276 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.058 0.942 38 H 0.048 0.952 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.412 0.588 42 H 0.410 0.590 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.025 0.975 46 H 0.025 0.975 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.436 3.568 -24.632 31.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.086 4.086 3 C -0.059 4.059 4 N -0.100 5.100 5 N -0.169 5.169 6 C -0.044 4.044 7 C 0.108 3.892 8 O -0.215 6.215 9 C -0.064 4.064 10 C -0.273 4.273 11 C 0.082 3.918 12 N -0.352 5.352 13 C 0.289 3.711 14 O -0.399 6.399 15 C 0.276 3.724 16 O -0.411 6.411 17 N -0.338 5.338 18 C -0.003 4.003 19 C -0.026 4.026 20 C -0.562 4.562 21 H 0.078 0.922 22 C -0.143 4.143 23 N -0.531 5.531 24 Si 0.726 3.274 25 H -0.201 1.201 26 H -0.213 1.213 27 H -0.201 1.201 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.125 0.875 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.248 0.752 42 H 0.246 0.754 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.043 0.957 46 H 0.043 0.957 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 19.423 3.867 -25.626 32.387 hybrid contribution -0.577 0.426 1.097 1.311 sum 18.846 4.293 -24.529 31.229 Atomic orbital electron populations 1.21730 0.93574 1.02524 1.02718 1.20057 0.96696 0.88077 1.03754 1.22104 0.97171 0.97101 0.89480 1.77495 1.21747 0.89113 1.21611 1.48951 1.51575 1.12143 1.04181 1.21913 1.01341 0.86125 0.95041 1.18876 0.99871 0.88740 0.81759 1.86165 1.26187 1.45540 1.63651 1.23196 0.78759 1.03388 1.01038 1.19603 1.18159 0.93280 0.96293 1.19383 0.83556 1.00646 0.88198 1.45907 1.15282 1.60972 1.12991 1.20427 0.88643 0.79529 0.82531 1.90748 1.53306 1.41195 1.54651 1.20011 0.87620 0.80981 0.83741 1.90729 1.53151 1.42328 1.54927 1.46217 1.17213 1.58452 1.11908 1.21917 0.79380 1.00313 0.98663 1.19351 0.98031 0.97420 0.87821 1.20981 0.97537 1.40146 0.97521 0.92237 1.25001 0.97604 0.94966 0.96730 1.69950 1.34992 1.41281 1.06861 0.86557 0.84331 0.78879 0.77660 1.20111 1.21258 1.20124 0.91576 0.91997 0.92367 0.90026 0.89493 0.90665 0.88854 0.89085 0.87490 0.92292 0.93309 0.90730 0.90000 0.75178 0.75414 0.91949 0.91909 0.95654 0.95675 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.89 37.16 0.37 -0.86 16 2 C -0.05 -0.37 6.31 -27.88 -0.18 -0.55 16 3 C 0.11 1.07 6.47 -82.43 -0.53 0.54 16 4 N -0.28 -2.95 12.57 33.66 0.42 -2.53 16 5 N -0.38 -3.51 4.02 -68.28 -0.27 -3.79 16 6 C 0.10 0.51 11.44 59.85 0.68 1.19 16 7 C 0.28 2.75 6.93 -16.92 -0.12 2.64 16 8 O -0.31 -2.80 10.38 -18.99 -0.20 -3.00 16 9 C 0.03 0.17 11.13 101.05 1.12 1.30 16 10 C -0.26 -2.65 5.49 -104.85 -0.58 -3.22 16 11 C 0.21 2.18 5.94 -5.20 -0.03 2.14 16 12 N -0.70 -8.78 5.54 -61.91 -0.34 -9.12 16 13 C 0.51 7.82 7.89 -11.59 -0.09 7.73 16 14 O -0.52 -8.88 16.48 5.50 0.09 -8.79 16 15 C 0.50 8.81 7.89 -11.59 -0.09 8.72 16 16 O -0.53 -10.43 16.48 5.50 0.09 -10.34 16 17 N -0.69 -12.77 5.55 -60.73 -0.34 -13.10 16 18 C 0.12 2.52 5.61 -4.04 -0.02 2.50 16 19 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 20 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 21 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 22 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 23 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 24 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.61 7.25 -51.93 -0.38 0.23 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.38 8.05 -51.93 -0.42 -0.04 16 36 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.81 7.25 -51.93 -0.38 0.43 16 41 H 0.41 5.19 7.94 -40.82 -0.32 4.86 16 42 H 0.41 7.25 7.94 -40.82 -0.32 6.93 16 43 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 44 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 408.27 15.07 6.15 6.15 Total: -1.00 -33.88 408.27 -5.97 -39.86 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -7.28 Total: 4.73 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -0.01 Total: 9.03 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: 0.20 Total: -54.01 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.02 Total: -22.13 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.88 -5.97 -39.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343287067.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.362 kcal (2) G-P(sol) polarization free energy of solvation -33.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds