Wall clock time and date at job start Tue Mar 31 2020 22:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.46957 * 2 1 4 4 N 1.30832 * 125.86389 * 270.19533 * 3 2 1 5 5 N 1.40061 * 108.34200 * 180.23979 * 4 3 2 6 6 C 1.46506 * 126.03507 * 179.76228 * 5 4 3 7 7 C 1.35132 * 107.93114 * 359.74136 * 5 4 3 8 8 O 1.35760 * 126.19422 * 180.02562 * 7 5 4 9 9 C 1.42890 * 117.00515 * 274.91205 * 8 7 5 10 10 C 1.35950 * 107.61284 * 0.02562 * 7 5 4 11 11 C 1.50694 * 126.08409 * 179.97438 * 10 7 5 12 12 N 1.46498 * 109.47168 * 90.02103 * 11 10 7 13 13 C 1.34778 * 119.99876 * 180.02562 * 12 11 10 14 14 O 1.21350 * 120.00256 * 359.97438 * 13 12 11 15 15 C 1.49445 * 120.00125 * 180.02562 * 13 12 11 16 16 O 1.21348 * 120.00084 * 359.97438 * 15 13 12 17 17 N 1.34778 * 120.00125 * 179.97438 * 15 13 12 18 18 C 1.46502 * 119.99712 * 180.02562 * 17 15 13 19 19 C 1.53008 * 109.46724 * 180.02562 * 18 17 15 20 20 C 1.50703 * 109.46940 * 180.02562 * 19 18 17 21 21 H 1.08002 * 120.00127 * 359.97438 * 20 19 18 22 22 C 1.37874 * 119.99995 * 180.02562 * 20 19 18 23 23 N 1.31513 * 119.99767 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00107 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47143 * 59.99836 * 24 22 20 26 26 H 1.48503 * 109.47183 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47270 * 299.99987 * 24 22 20 28 28 H 1.09000 * 109.46929 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47031 * 299.99291 * 1 2 3 30 30 H 1.08996 * 109.47350 * 60.00183 * 1 2 3 31 31 H 1.09000 * 109.47060 * 239.99961 * 2 1 3 32 32 H 1.08999 * 109.47176 * 120.00560 * 2 1 3 33 33 H 1.08994 * 109.47269 * 274.14461 * 6 5 4 34 34 H 1.09002 * 109.47177 * 34.14441 * 6 5 4 35 35 H 1.08998 * 109.47332 * 154.14567 * 6 5 4 36 36 H 1.08999 * 109.47476 * 184.69249 * 9 8 7 37 37 H 1.09003 * 109.47120 * 304.69601 * 9 8 7 38 38 H 1.09001 * 109.46982 * 64.69374 * 9 8 7 39 39 H 1.09003 * 109.47059 * 330.01861 * 11 10 7 40 40 H 1.08998 * 109.46978 * 210.02764 * 11 10 7 41 41 H 0.96997 * 120.00442 * 0.02562 * 12 11 10 42 42 H 0.96999 * 120.00264 * 359.97438 * 17 15 13 43 43 H 1.09001 * 109.47248 * 299.99312 * 18 17 15 44 44 H 1.08992 * 109.47397 * 59.99986 * 18 17 15 45 45 H 1.09001 * 109.46682 * 299.99642 * 19 18 17 46 46 H 1.08992 * 109.47209 * 59.99853 * 19 18 17 47 47 H 0.97006 * 120.00318 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2844 2.1447 -1.0603 5 7 2.7361 3.4016 -0.6386 6 6 3.1325 4.5115 -1.5089 7 6 2.7414 3.4100 0.7127 8 8 3.1141 4.4463 1.5065 9 6 4.5077 4.5737 1.7955 10 6 2.3059 2.1928 1.1333 11 6 2.1509 1.7520 2.5660 12 7 0.8003 2.0749 3.0328 13 6 0.4324 1.7708 4.2933 14 8 1.2196 1.2292 5.0413 15 6 -0.9455 2.0996 4.7694 16 8 -1.7329 2.6408 4.0213 17 7 -1.3136 1.7951 6.0297 18 6 -2.6646 2.1170 6.4961 19 6 -2.8216 1.6702 7.9511 20 6 -4.2115 2.0007 8.4308 21 1 -4.9125 2.4817 7.7648 22 6 -4.5877 1.6901 9.7203 23 7 -3.7339 1.1048 10.5315 24 14 -6.3103 2.1004 10.3152 25 1 -7.3070 1.3942 9.4706 26 1 -6.4628 1.6667 11.7273 27 1 -6.5308 3.5658 10.2204 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 4.1806 4.3991 -1.7865 34 1 2.5161 4.5064 -2.4079 35 1 2.9959 5.4547 -0.9800 36 1 4.6589 5.3885 2.5035 37 1 4.8756 3.6434 2.2281 38 1 5.0516 4.7865 0.8751 39 1 2.8831 2.2689 3.1864 40 1 2.3116 0.6761 2.6345 41 1 0.1709 2.5075 2.4349 42 1 -0.6844 1.3622 6.6276 43 1 -2.8260 3.1927 6.4274 44 1 -3.3961 1.5993 5.8758 45 1 -2.6600 0.5945 8.0203 46 1 -2.0900 2.1882 8.5712 47 1 -3.9987 0.8859 11.4387 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343287067.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:32 Heat of formation + Delta-G solvation = -65.391118 kcal Electronic energy + Delta-G solvation = -28924.687424 eV Core-core repulsion = 24722.660729 eV Total energy + Delta-G solvation = -4202.026695 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.74677 -41.58250 -39.57651 -39.22522 -37.00370 -36.38792 -35.24705 -34.74369 -32.81854 -31.67904 -31.39538 -29.13164 -27.69933 -27.43137 -26.37364 -24.67801 -24.14176 -22.77372 -21.90511 -21.42068 -20.86633 -19.67135 -18.56603 -18.48635 -17.85958 -17.41075 -17.27636 -16.91395 -16.56976 -16.42732 -16.19273 -15.81708 -15.71422 -15.59243 -15.14078 -14.87192 -14.70701 -14.65972 -14.28748 -14.13077 -13.94212 -13.71682 -13.36727 -13.24628 -12.99980 -12.91382 -12.80372 -12.77508 -12.53198 -12.37393 -12.25192 -12.22972 -11.83778 -11.66826 -11.44094 -11.19118 -10.74342 -10.59304 -10.29856 -10.22277 -10.16178 -9.63492 -8.21648 -6.32798 0.37029 0.37703 1.14821 1.20573 1.43978 1.46583 1.54308 1.67227 2.16979 2.41822 2.48840 2.82158 3.13011 3.27586 3.49650 3.86945 3.89230 4.11031 4.18025 4.24998 4.29315 4.32885 4.41445 4.43787 4.47328 4.54928 4.57743 4.62619 4.68426 4.71118 4.83324 4.84891 5.07460 5.11187 5.12929 5.16360 5.19650 5.32865 5.44299 5.52455 5.57244 5.77404 5.97564 6.14919 6.32016 6.38771 6.52114 6.73162 6.81374 6.96820 7.36411 8.90076 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019450 B = 0.001990 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.238549 B =14063.752028 C =14527.459408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.046 4.046 3 C 0.105 3.895 4 N -0.298 5.298 5 N -0.380 5.380 6 C 0.088 3.912 7 C 0.278 3.722 8 O -0.321 6.321 9 C 0.025 3.975 10 C -0.276 4.276 11 C 0.209 3.791 12 N -0.681 5.681 13 C 0.517 3.483 14 O -0.539 6.539 15 C 0.499 3.501 16 O -0.551 6.551 17 N -0.688 5.688 18 C 0.138 3.862 19 C 0.019 3.981 20 C -0.545 4.545 21 H 0.064 0.936 22 C 0.004 3.996 23 N -0.927 5.927 24 Si 0.968 3.032 25 H -0.267 1.267 26 H -0.283 1.283 27 H -0.267 1.267 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.122 0.878 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.413 0.587 42 H 0.415 0.585 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.009 0.991 46 H 0.008 0.992 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.775 4.131 -25.724 32.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.085 4.085 3 C -0.061 4.061 4 N -0.123 5.123 5 N -0.169 5.169 6 C -0.052 4.052 7 C 0.107 3.893 8 O -0.232 6.232 9 C -0.069 4.069 10 C -0.289 4.289 11 C 0.086 3.914 12 N -0.333 5.333 13 C 0.297 3.703 14 O -0.417 6.417 15 C 0.280 3.720 16 O -0.430 6.430 17 N -0.339 5.339 18 C 0.015 3.985 19 C -0.018 4.018 20 C -0.584 4.584 21 H 0.082 0.918 22 C -0.194 4.194 23 N -0.567 5.567 24 Si 0.792 3.208 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.192 1.192 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.111 0.889 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.141 0.859 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.110 0.890 41 H 0.250 0.750 42 H 0.251 0.749 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.027 0.973 46 H 0.026 0.974 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 19.791 4.445 -26.770 33.587 hybrid contribution -0.588 0.319 1.351 1.508 sum 19.203 4.764 -25.419 32.212 Atomic orbital electron populations 1.21693 0.93959 1.02971 1.01578 1.20129 0.96231 0.87348 1.04768 1.22371 0.96783 0.97746 0.89227 1.77451 1.22676 0.89980 1.22206 1.49237 1.50877 1.12387 1.04419 1.22228 1.02614 0.85426 0.94915 1.18998 0.99351 0.88748 0.82250 1.86136 1.28235 1.45229 1.63557 1.23435 0.77104 1.04050 1.02343 1.19567 1.19504 0.93882 0.95926 1.19475 0.82031 1.01264 0.88621 1.45936 1.16145 1.59493 1.11747 1.19881 0.87279 0.79869 0.83299 1.90751 1.53265 1.42397 1.55280 1.20390 0.88544 0.80069 0.82979 1.90718 1.54018 1.42990 1.55256 1.46051 1.16342 1.58893 1.12618 1.21471 0.80847 0.99873 0.96293 1.19172 0.96711 0.96074 0.89881 1.21420 0.98739 1.40162 0.98044 0.91771 1.25919 1.01869 0.94719 0.96932 1.70071 1.37078 1.42272 1.07254 0.85461 0.79199 0.78982 0.77168 1.19204 1.20838 1.19237 0.90350 0.93560 0.92989 0.88947 0.88532 0.88734 0.88248 0.87969 0.85949 0.92262 0.91619 0.90566 0.89046 0.75039 0.74865 0.92197 0.92055 0.97314 0.97391 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.89 71.98 0.71 -1.57 16 2 C -0.05 -0.67 6.31 29.85 0.19 -0.48 16 3 C 0.10 1.98 6.47 43.09 0.28 2.26 16 4 N -0.30 -6.10 12.57 -47.42 -0.60 -6.70 16 5 N -0.38 -6.55 4.02 -481.25 -1.93 -8.48 16 6 C 0.09 0.77 11.44 127.77 1.46 2.23 16 7 C 0.28 5.18 6.93 83.65 0.58 5.76 16 8 O -0.32 -5.45 10.38 -90.87 -0.94 -6.39 16 9 C 0.02 0.23 11.13 113.37 1.26 1.49 16 10 C -0.28 -5.34 5.49 -20.01 -0.11 -5.45 16 11 C 0.21 4.19 5.94 85.63 0.51 4.69 16 12 N -0.68 -16.55 5.54 -468.16 -2.59 -19.15 16 13 C 0.52 15.55 7.89 87.27 0.69 16.24 16 14 O -0.54 -17.90 16.48 -3.25 -0.05 -17.95 16 15 C 0.50 17.51 7.89 87.27 0.69 18.20 16 16 O -0.55 -21.30 16.48 -3.24 -0.05 -21.35 16 17 N -0.69 -25.58 5.55 -464.40 -2.58 -28.16 16 18 C 0.14 5.88 5.61 86.38 0.48 6.37 16 19 C 0.02 0.97 5.09 29.85 0.15 1.13 16 20 C -0.55 -30.30 9.11 25.60 0.23 -30.07 16 21 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 22 C 0.00 0.25 5.46 84.65 0.46 0.71 16 23 N -0.93 -54.96 13.29 21.45 0.28 -54.68 16 24 Si 0.97 43.58 29.54 68.60 2.03 45.61 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 27 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 28 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.10 1.21 7.25 -2.39 -0.02 1.20 16 33 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.10 0.66 8.05 -2.39 -0.02 0.64 16 36 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.09 1.68 7.25 -2.39 -0.02 1.67 16 41 H 0.41 10.12 7.94 -92.71 -0.74 9.38 16 42 H 0.41 14.77 7.94 -92.71 -0.74 14.03 16 43 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 44 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 45 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 46 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 47 H 0.27 14.83 8.31 -92.70 -0.77 14.06 16 Total: -1.00 -71.48 408.27 0.68 -70.80 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: -0.47 Total: 24.95 kcal Atomic # 6 Polarization: 13.92 SS G_CDS: 7.59 Total: 21.51 kcal Atomic # 7 Polarization: -109.75 SS G_CDS: -7.42 Total: -117.17 kcal Atomic # 8 Polarization: -44.65 SS G_CDS: -1.05 Total: -45.70 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -71.48 0.68 -70.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343287067.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.410 kcal (2) G-P(sol) polarization free energy of solvation -71.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds