Wall clock time and date at job start Tue Mar 31 2020 21:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29953 * 126.28906 * 2 1 4 4 O 1.21297 * 110.25358 * 180.02562 * 3 2 1 5 5 C 1.33642 * 109.80977 * 0.02562 * 4 3 2 6 6 C 1.50709 * 126.55173 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47423 * 165.02380 * 6 5 4 8 8 C 1.52997 * 109.46945 * 285.02757 * 6 5 4 9 9 N 1.46505 * 109.46710 * 45.02264 * 6 5 4 10 10 C 1.46497 * 120.00201 * 299.99878 * 9 6 5 11 11 C 1.34780 * 119.99528 * 120.00374 * 9 6 5 12 12 O 1.21346 * 120.00067 * 5.34628 * 11 9 6 13 13 C 1.49453 * 119.99574 * 185.34395 * 11 9 6 14 14 O 1.21351 * 120.00000 * 5.98587 * 13 11 9 15 15 N 1.34772 * 119.99574 * 185.98012 * 13 11 9 16 16 C 1.46500 * 119.99778 * 179.97438 * 15 13 11 17 17 C 1.52998 * 109.47328 * 180.02562 * 16 15 13 18 18 C 1.53006 * 109.47312 * 300.00145 * 17 16 15 19 19 C 1.53002 * 109.46957 * 60.00045 * 17 16 15 20 20 C 1.50694 * 109.47558 * 180.02562 * 17 16 15 21 21 H 1.08003 * 120.00325 * 359.97438 * 20 17 16 22 22 C 1.37875 * 120.00489 * 180.02562 * 20 17 16 23 23 N 1.31521 * 119.99879 * 359.97438 * 22 20 17 24 24 Si 1.86802 * 120.00277 * 179.97438 * 22 20 17 25 25 H 1.48495 * 109.46941 * 60.00015 * 24 22 20 26 26 H 1.48498 * 109.46998 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47293 * 299.99905 * 24 22 20 28 28 N 1.31128 * 106.90287 * 0.22842 * 5 4 3 29 29 H 1.09001 * 109.47278 * 89.97508 * 1 2 3 30 30 H 1.09002 * 109.47066 * 209.97482 * 1 2 3 31 31 H 1.09003 * 109.47380 * 329.96860 * 1 2 3 32 32 H 1.08999 * 109.47368 * 59.99589 * 8 6 5 33 33 H 1.09001 * 109.47395 * 179.97438 * 8 6 5 34 34 H 1.09003 * 109.47161 * 299.99405 * 8 6 5 35 35 H 1.09004 * 109.46849 * 95.25311 * 10 9 6 36 36 H 1.09000 * 109.47251 * 335.26010 * 10 9 6 37 37 H 1.08994 * 109.47494 * 215.25155 * 10 9 6 38 38 H 0.96999 * 120.00245 * 0.02562 * 15 13 11 39 39 H 1.08997 * 109.47423 * 300.00266 * 16 15 13 40 40 H 1.09000 * 109.46893 * 60.00641 * 16 15 13 41 41 H 1.09004 * 109.46648 * 60.00170 * 18 17 16 42 42 H 1.08995 * 109.47327 * 179.97438 * 18 17 16 43 43 H 1.08999 * 109.47166 * 300.00330 * 18 17 16 44 44 H 1.08997 * 109.47014 * 60.00384 * 19 17 16 45 45 H 1.09004 * 109.47197 * 180.02562 * 19 17 16 46 46 H 1.08997 * 109.47221 * 299.99729 * 19 17 16 47 47 H 0.96995 * 120.00080 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4418 0.7124 -0.0005 5 6 3.5298 -0.6211 -0.0015 6 6 4.7969 -1.4370 -0.0029 7 1 4.5652 -2.4686 0.2622 8 6 5.4272 -1.3977 -1.3964 9 7 5.7367 -0.8811 0.9740 10 6 6.2050 0.5001 0.8361 11 6 6.1704 -1.6406 1.9995 12 8 5.8602 -2.8121 2.0604 13 6 7.0335 -1.0397 3.0614 14 8 7.2545 0.1535 3.0606 15 7 7.5661 -1.8231 4.0200 16 6 8.4126 -1.2343 5.0607 17 6 8.8850 -2.3322 6.0157 18 6 7.6712 -3.0015 6.6638 19 6 9.6871 -3.3761 5.2360 20 6 9.7552 -1.7265 7.0866 21 1 9.9521 -0.6646 7.0859 22 6 10.3009 -2.5280 8.0668 23 7 10.0616 -3.8212 8.0675 24 14 11.3802 -1.7771 9.3937 25 1 10.6015 -0.7645 10.1508 26 1 11.8385 -2.8429 10.3208 27 1 12.5580 -1.1272 8.7649 28 7 2.3030 -1.0841 -0.0065 29 1 -0.3634 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3634 0.8897 0.5143 32 1 5.6589 -0.3661 -1.6615 33 1 6.3439 -1.9874 -1.3974 34 1 4.7280 -1.8113 -2.1232 35 1 5.5883 1.1559 1.4508 36 1 6.1320 0.8061 -0.2076 37 1 7.2428 0.5663 1.1624 38 1 7.3897 -2.7769 4.0205 39 1 9.2775 -0.7579 4.5991 40 1 7.8412 -0.4904 5.6159 41 1 7.0415 -3.4397 5.8894 42 1 8.0077 -3.7840 7.3438 43 1 7.0997 -2.2579 7.2192 44 1 10.5518 -2.8993 4.7744 45 1 10.0232 -4.1586 5.9163 46 1 9.0573 -3.8142 4.4618 47 1 10.4458 -4.3852 8.7568 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346577466.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:51 Heat of formation + Delta-G solvation = 8.493722 kcal Electronic energy + Delta-G solvation = -29901.315495 eV Core-core repulsion = 25702.492687 eV Total energy + Delta-G solvation = -4198.822808 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.92316 -40.84637 -38.70196 -37.02492 -36.51233 -36.33393 -33.70617 -33.17389 -31.25994 -30.93112 -29.47118 -27.32158 -26.55173 -25.75089 -25.46959 -25.04492 -23.86711 -23.15076 -21.12417 -19.82316 -18.90361 -18.47320 -17.86973 -17.75094 -17.06441 -16.36838 -16.04182 -15.71250 -15.30306 -14.84270 -14.58830 -14.36490 -14.28928 -13.96250 -13.72666 -13.49801 -13.29422 -12.99432 -12.95866 -12.86936 -12.65914 -12.64850 -12.40891 -12.22118 -11.96099 -11.68324 -11.43858 -11.39121 -11.31983 -11.19543 -10.88327 -10.75803 -10.42498 -10.27585 -10.22208 -9.68413 -9.52593 -9.30330 -9.21614 -8.83798 -8.64184 -8.39215 -6.04645 -4.15661 0.73813 1.45232 1.81815 2.21562 2.40062 3.23023 3.28338 3.33223 3.34452 3.36513 3.57400 3.69946 4.34660 4.38696 4.42242 4.62502 4.75231 4.85116 4.98791 5.03053 5.15695 5.20358 5.21956 5.27751 5.47113 5.51143 5.62458 5.63984 5.81889 5.98665 6.06770 6.19349 6.43281 6.57731 6.68925 6.81518 6.81931 6.90264 6.97254 7.29103 7.41984 7.52282 7.66184 7.81436 7.83800 7.97462 8.08708 8.25484 8.36530 8.84265 9.50343 10.96716 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023219 B = 0.002250 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.603945 B =12442.749726 C =12567.286902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.167 3.833 3 N -0.384 5.384 4 O 0.086 5.914 5 C 0.174 3.826 6 C 0.231 3.769 7 H 0.148 0.852 8 C -0.161 4.161 9 N -0.593 5.593 10 C 0.073 3.927 11 C 0.513 3.487 12 O -0.511 6.511 13 C 0.497 3.503 14 O -0.524 6.524 15 N -0.678 5.678 16 C 0.128 3.872 17 C 0.056 3.944 18 C -0.134 4.134 19 C -0.133 4.133 20 C -0.508 4.508 21 H 0.058 0.942 22 C 0.067 3.933 23 N -0.884 5.884 24 Si 0.895 3.105 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.277 1.277 28 N -0.471 5.471 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.104 0.896 38 H 0.411 0.589 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.008 0.992 42 H 0.087 0.913 43 H 0.027 0.973 44 H 0.028 0.972 45 H 0.087 0.913 46 H 0.008 0.992 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.858 4.795 -19.154 23.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.106 4.106 3 N -0.091 5.091 4 O 0.028 5.972 5 C -0.048 4.048 6 C 0.125 3.875 7 H 0.165 0.835 8 C -0.220 4.220 9 N -0.329 5.329 10 C -0.068 4.068 11 C 0.297 3.703 12 O -0.384 6.384 13 C 0.277 3.723 14 O -0.403 6.403 15 N -0.329 5.329 16 C 0.007 3.993 17 C 0.055 3.945 18 C -0.192 4.192 19 C -0.191 4.191 20 C -0.547 4.547 21 H 0.076 0.924 22 C -0.135 4.135 23 N -0.522 5.522 24 Si 0.723 3.277 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.203 1.203 28 N -0.206 5.206 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.122 0.878 38 H 0.248 0.752 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.027 0.973 42 H 0.106 0.894 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.106 0.894 46 H 0.027 0.973 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.438 5.348 -18.958 23.845 hybrid contribution 0.507 0.019 0.768 0.921 sum -12.930 5.367 -18.190 22.953 Atomic orbital electron populations 1.20156 0.82714 1.04883 1.04329 1.25969 1.00714 0.83335 1.00560 1.74644 0.89441 1.23937 1.21110 1.85324 1.22289 1.24464 1.65155 1.29176 0.97062 0.82434 0.96126 1.19590 0.79919 0.96592 0.91374 0.83466 1.22215 1.02467 1.04242 0.93026 1.47770 1.44130 1.15455 1.25523 1.22303 1.03134 0.79497 1.01899 1.20711 0.81193 0.86156 0.82257 1.90766 1.56535 1.15499 1.75641 1.19710 0.81948 0.87179 0.83484 1.90711 1.60365 1.14467 1.74732 1.46242 1.47741 1.12558 1.26386 1.21968 0.92168 0.97871 0.87319 1.18381 0.93427 0.90889 0.91770 1.21865 0.96269 1.01405 0.99643 1.21857 0.98061 1.01163 0.98034 1.20896 1.29760 0.94239 1.09767 0.92398 1.24884 0.96173 0.94832 0.97592 1.69795 1.44436 1.03776 1.34232 0.86612 0.80839 0.78761 0.81517 1.20285 1.21321 1.20259 1.71897 0.99376 1.29523 1.19784 0.89236 0.88876 0.89392 0.90881 0.89384 0.90110 0.91529 0.91187 0.87803 0.75164 0.91839 0.91935 0.97275 0.89414 0.95348 0.95306 0.89424 0.97296 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.43 10.51 36.00 0.38 -0.05 16 2 C 0.17 1.85 8.22 -156.36 -1.28 0.57 16 3 N -0.38 -4.69 12.16 30.90 0.38 -4.32 16 4 O 0.09 1.00 10.00 18.10 0.18 1.18 16 5 C 0.17 1.94 7.20 -13.06 -0.09 1.85 16 6 C 0.23 2.26 3.18 -69.08 -0.22 2.04 16 7 H 0.15 1.55 6.91 -51.93 -0.36 1.19 16 8 C -0.16 -1.04 9.16 37.16 0.34 -0.70 16 9 N -0.59 -6.86 2.75 -175.77 -0.48 -7.34 16 10 C 0.07 0.75 7.71 59.85 0.46 1.21 16 11 C 0.51 7.47 7.73 -11.58 -0.09 7.38 16 12 O -0.51 -8.23 15.83 5.50 0.09 -8.14 16 13 C 0.50 8.22 7.70 -11.59 -0.09 8.13 16 14 O -0.52 -9.20 13.38 5.50 0.07 -9.13 16 15 N -0.68 -12.00 4.95 -60.73 -0.30 -12.30 16 16 C 0.13 2.58 4.50 -4.04 -0.02 2.56 16 17 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 18 C -0.13 -3.02 8.08 37.16 0.30 -2.72 16 19 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 20 C -0.51 -12.93 8.01 -34.44 -0.28 -13.21 16 21 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 22 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 23 N -0.88 -23.29 9.35 55.43 0.52 -22.77 16 24 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 N -0.47 -5.67 11.55 -9.86 -0.11 -5.79 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.41 6.66 -51.93 -0.35 0.06 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.76 7.96 -51.93 -0.41 0.34 16 36 H 0.07 0.52 6.44 -51.93 -0.33 0.18 16 37 H 0.10 1.19 5.95 -51.93 -0.31 0.88 16 38 H 0.41 7.19 5.65 -40.82 -0.23 6.96 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 42 H 0.09 2.18 6.07 -51.93 -0.32 1.87 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.09 2.16 6.07 -51.93 -0.32 1.85 16 46 H 0.01 0.16 6.86 -51.93 -0.36 -0.19 16 47 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 381.34 15.07 5.75 5.75 Total: -1.00 -29.26 381.34 -6.08 -35.34 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -6.68 Total: 4.93 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -0.46 Total: 7.23 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: 0.00 Total: -52.52 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: 0.34 Total: -16.08 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.26 -6.08 -35.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346577466.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.836 kcal (2) G-P(sol) polarization free energy of solvation -29.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds