Wall clock time and date at job start Tue Mar 31 2020 21:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29952 * 126.28660 * 2 1 4 4 O 1.21305 * 110.25024 * 179.68625 * 3 2 1 5 5 C 1.33645 * 109.81149 * 0.46496 * 4 3 2 6 6 C 1.50697 * 126.55328 * 179.79998 * 5 4 3 7 7 H 1.09000 * 109.47454 * 194.69109 * 6 5 4 8 8 C 1.52997 * 109.46930 * 74.69105 * 6 5 4 9 9 N 1.46501 * 109.47291 * 314.69167 * 6 5 4 10 10 C 1.46503 * 119.99769 * 59.99754 * 9 6 5 11 11 C 1.34770 * 120.00170 * 240.00163 * 9 6 5 12 12 O 1.21351 * 120.00273 * 356.40713 * 11 9 6 13 13 C 1.49450 * 120.00042 * 176.41125 * 11 9 6 14 14 O 1.21353 * 120.00152 * 5.91212 * 13 11 9 15 15 N 1.34781 * 120.00168 * 185.91736 * 13 11 9 16 16 C 1.46498 * 120.00117 * 179.97438 * 15 13 11 17 17 C 1.53000 * 109.46980 * 179.97438 * 16 15 13 18 18 C 1.53003 * 109.47380 * 299.99940 * 17 16 15 19 19 C 1.53008 * 109.47212 * 59.99909 * 17 16 15 20 20 C 1.50698 * 109.47315 * 179.97438 * 17 16 15 21 21 H 1.08005 * 119.99858 * 359.97438 * 20 17 16 22 22 C 1.37875 * 120.00266 * 180.02562 * 20 17 16 23 23 N 1.31514 * 120.00191 * 359.97438 * 22 20 17 24 24 Si 1.86800 * 119.99996 * 179.97438 * 22 20 17 25 25 H 1.48499 * 109.47158 * 59.99871 * 24 22 20 26 26 H 1.48497 * 109.47045 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47431 * 300.00229 * 24 22 20 28 28 N 1.31130 * 106.89595 * 359.54384 * 5 4 3 29 29 H 1.09002 * 109.46763 * 270.02306 * 1 2 3 30 30 H 1.08997 * 109.47080 * 30.02604 * 1 2 3 31 31 H 1.08998 * 109.47039 * 150.02910 * 1 2 3 32 32 H 1.09002 * 109.47661 * 180.02562 * 8 6 5 33 33 H 1.09000 * 109.47511 * 299.99971 * 8 6 5 34 34 H 1.09001 * 109.47502 * 60.00258 * 8 6 5 35 35 H 1.09000 * 109.47009 * 96.01668 * 10 9 6 36 36 H 1.09003 * 109.47125 * 216.01704 * 10 9 6 37 37 H 1.08997 * 109.47034 * 336.01253 * 10 9 6 38 38 H 0.97003 * 119.99562 * 359.97438 * 15 13 11 39 39 H 1.08999 * 109.46916 * 299.99202 * 16 15 13 40 40 H 1.08998 * 109.47212 * 59.99466 * 16 15 13 41 41 H 1.08997 * 109.46897 * 59.99896 * 18 17 16 42 42 H 1.08999 * 109.47260 * 180.02562 * 18 17 16 43 43 H 1.08998 * 109.46796 * 300.00236 * 18 17 16 44 44 H 1.08996 * 109.46809 * 59.99821 * 19 17 16 45 45 H 1.08999 * 109.46703 * 180.02562 * 19 17 16 46 46 H 1.08997 * 109.46666 * 299.99883 * 19 17 16 47 47 H 0.97001 * 120.00260 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7124 0.0062 5 6 3.5299 -0.6211 0.0007 6 6 4.7970 -1.4370 0.0012 7 1 4.5652 -2.4683 -0.2646 8 6 5.4275 -1.3988 1.3947 9 7 5.7366 -0.8804 -0.9753 10 6 6.2049 0.5008 -0.8364 11 6 6.1701 -1.6389 -2.0015 12 8 5.8339 -2.8022 -2.0806 13 6 7.0651 -1.0474 -3.0420 14 8 7.4882 0.0820 -2.9076 15 7 7.4022 -1.7682 -4.1298 16 6 8.2790 -1.1882 -5.1501 17 6 8.5028 -2.2071 -6.2692 18 6 9.1552 -3.4646 -5.6912 19 6 7.1585 -2.5744 -6.9010 20 6 9.4043 -1.6103 -7.3191 21 1 9.7797 -0.6046 -7.2002 22 6 9.7490 -2.3477 -8.4319 23 7 9.2915 -3.5721 -8.5770 24 14 10.8658 -1.6076 -9.7336 25 1 12.1708 -1.2507 -9.1213 26 1 11.0832 -2.5966 -10.8198 27 1 10.2319 -0.3873 -10.2941 28 7 2.3031 -1.0841 0.0005 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5134 32 1 6.3442 -1.9885 1.3951 33 1 5.6593 -0.3675 1.6606 34 1 4.7285 -1.8130 2.1213 35 1 7.1650 0.5088 -0.3204 36 1 6.3196 0.9467 -1.8244 37 1 5.4784 1.0746 -0.2610 38 1 7.0642 -2.6711 -4.2371 39 1 7.8144 -0.2922 -5.5616 40 1 9.2368 -0.9269 -4.7001 41 1 8.5028 -3.8961 -4.9321 42 1 9.3151 -4.1903 -6.4886 43 1 10.1128 -3.2029 -5.2412 44 1 6.6938 -1.6786 -7.3128 45 1 7.3181 -3.3007 -7.6980 46 1 6.5062 -3.0060 -6.1418 47 1 9.5338 -4.0908 -9.3601 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346577467.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:55 Heat of formation + Delta-G solvation = 11.408517 kcal Electronic energy + Delta-G solvation = -29924.295437 eV Core-core repulsion = 25725.599024 eV Total energy + Delta-G solvation = -4198.696413 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.93337 -40.85758 -38.70822 -37.02722 -36.52048 -36.35282 -33.71451 -33.16656 -31.26179 -30.93762 -29.49809 -27.27683 -26.54544 -25.75371 -25.47828 -25.05715 -23.87418 -23.14574 -21.15503 -19.88515 -18.90680 -18.47966 -17.85708 -17.74316 -17.07122 -16.43894 -15.97245 -15.72658 -15.34255 -14.82402 -14.54283 -14.38052 -14.27362 -13.96483 -13.77680 -13.47461 -13.31115 -13.01209 -12.95424 -12.78977 -12.71462 -12.65397 -12.44750 -12.21925 -11.98889 -11.68694 -11.43660 -11.38656 -11.28168 -11.18196 -10.88575 -10.75823 -10.42852 -10.27881 -10.22393 -9.68691 -9.53327 -9.34786 -9.10936 -8.83842 -8.64630 -8.39503 -6.04827 -4.15900 0.73143 1.45004 1.81154 2.21633 2.38100 3.22835 3.28216 3.33140 3.33506 3.36008 3.57205 3.69542 4.34801 4.39053 4.41971 4.60745 4.76031 4.90363 4.98857 5.04351 5.13359 5.21588 5.21801 5.29331 5.49563 5.51040 5.61516 5.66187 5.84601 6.00209 6.06183 6.18852 6.43001 6.59809 6.69420 6.81323 6.81696 6.90123 6.96976 7.28943 7.41938 7.51987 7.65953 7.80843 7.83285 7.97242 8.08375 8.24907 8.36163 8.84027 9.50150 10.96538 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021614 B = 0.002294 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.138842 B =12204.684421 C =12428.409549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.168 3.832 3 N -0.384 5.384 4 O 0.083 5.917 5 C 0.175 3.825 6 C 0.231 3.769 7 H 0.148 0.852 8 C -0.160 4.160 9 N -0.591 5.591 10 C 0.058 3.942 11 C 0.513 3.487 12 O -0.511 6.511 13 C 0.499 3.501 14 O -0.524 6.524 15 N -0.677 5.677 16 C 0.128 3.872 17 C 0.056 3.944 18 C -0.134 4.134 19 C -0.134 4.134 20 C -0.508 4.508 21 H 0.058 0.942 22 C 0.067 3.933 23 N -0.884 5.884 24 Si 0.895 3.105 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.277 1.277 28 N -0.471 5.471 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.116 0.884 37 H 0.069 0.931 38 H 0.411 0.589 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.009 0.991 42 H 0.087 0.913 43 H 0.028 0.972 44 H 0.027 0.973 45 H 0.087 0.913 46 H 0.008 0.992 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.076 4.570 19.538 23.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.105 4.105 3 N -0.092 5.092 4 O 0.026 5.974 5 C -0.047 4.047 6 C 0.124 3.876 7 H 0.165 0.835 8 C -0.218 4.218 9 N -0.327 5.327 10 C -0.083 4.083 11 C 0.296 3.704 12 O -0.385 6.385 13 C 0.278 3.722 14 O -0.403 6.403 15 N -0.328 5.328 16 C 0.006 3.994 17 C 0.055 3.945 18 C -0.192 4.192 19 C -0.192 4.192 20 C -0.547 4.547 21 H 0.076 0.924 22 C -0.135 4.135 23 N -0.522 5.522 24 Si 0.723 3.277 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.203 1.203 28 N -0.205 5.205 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.134 0.866 37 H 0.087 0.913 38 H 0.249 0.751 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.028 0.972 42 H 0.106 0.894 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.106 0.894 46 H 0.027 0.973 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.563 5.089 19.394 23.661 hybrid contribution 0.513 0.008 -0.723 0.886 sum -12.050 5.097 18.671 22.799 Atomic orbital electron populations 1.20159 0.82698 1.04900 1.04337 1.25966 1.00708 0.83316 1.00488 1.74643 0.89503 1.23987 1.21105 1.85335 1.22262 1.24518 1.65317 1.29170 0.97060 0.82375 0.96103 1.19614 0.79887 0.96650 0.91418 0.83487 1.22196 1.02380 1.04264 0.92988 1.47789 1.44111 1.15406 1.25388 1.22612 0.99505 0.79575 1.06591 1.20669 0.81457 0.86129 0.82103 1.90769 1.56412 1.16097 1.75250 1.19722 0.82722 0.86344 0.83402 1.90640 1.54320 1.17891 1.77423 1.46254 1.47899 1.18709 1.19973 1.21978 0.91785 0.97902 0.87692 1.18382 0.94121 0.91298 0.90651 1.21859 0.97546 1.00423 0.99324 1.21866 0.95684 1.00991 1.00642 1.20897 1.29216 1.00323 1.04248 0.92386 1.24881 0.95915 0.94816 0.97854 1.69793 1.44507 1.09195 1.28745 0.86613 0.81145 0.78867 0.81105 1.20257 1.21319 1.20278 1.71895 0.99365 1.29531 1.19723 0.89227 0.89378 0.88863 0.89466 0.90932 0.90174 0.91289 0.86647 0.91274 0.75145 0.91897 0.91804 0.97245 0.89427 0.95300 0.95342 0.89391 0.97334 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.43 10.51 36.01 0.38 -0.05 16 2 C 0.17 1.86 8.22 -156.37 -1.28 0.57 16 3 N -0.38 -4.67 12.16 30.91 0.38 -4.29 16 4 O 0.08 0.96 8.92 18.10 0.16 1.12 16 5 C 0.18 1.95 7.17 -13.05 -0.09 1.86 16 6 C 0.23 2.27 3.18 -69.08 -0.22 2.05 16 7 H 0.15 1.56 6.90 -51.93 -0.36 1.20 16 8 C -0.16 -1.06 9.18 37.16 0.34 -0.72 16 9 N -0.59 -6.88 2.75 -175.77 -0.48 -7.37 16 10 C 0.06 0.61 8.48 59.85 0.51 1.12 16 11 C 0.51 7.48 7.73 -11.59 -0.09 7.39 16 12 O -0.51 -8.27 15.82 5.50 0.09 -8.18 16 13 C 0.50 8.21 7.77 -11.58 -0.09 8.12 16 14 O -0.52 -9.08 13.14 5.49 0.07 -9.00 16 15 N -0.68 -11.99 4.95 -60.73 -0.30 -12.29 16 16 C 0.13 2.57 4.50 -4.04 -0.02 2.55 16 17 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 18 C -0.13 -2.99 8.08 37.16 0.30 -2.69 16 19 C -0.13 -3.01 8.08 37.16 0.30 -2.71 16 20 C -0.51 -12.93 8.01 -34.44 -0.28 -13.21 16 21 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 22 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 23 N -0.88 -23.30 9.35 55.43 0.52 -22.78 16 24 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 N -0.47 -5.66 11.55 -9.86 -0.11 -5.77 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.43 7.67 -51.93 -0.40 0.03 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.12 1.46 5.36 -51.93 -0.28 1.18 16 37 H 0.07 0.62 5.60 -51.93 -0.29 0.33 16 38 H 0.41 7.21 5.65 -40.82 -0.23 6.98 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 41 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 42 H 0.09 2.17 6.07 -51.93 -0.32 1.85 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.09 2.19 6.07 -51.93 -0.32 1.87 16 46 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 47 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 380.60 15.07 5.74 5.74 Total: -1.00 -29.02 380.60 -6.05 -35.07 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.67 Total: 5.31 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -0.42 Total: 7.11 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: 0.00 Total: -52.51 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: 0.32 Total: -16.06 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.02 -6.05 -35.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346577467.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.480 kcal (2) G-P(sol) polarization free energy of solvation -29.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds