Wall clock time and date at job start Tue Mar 31 2020 21:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.31127 * 126.55264 * 2 1 4 4 C 1.34502 * 105.61480 * 180.02562 * 3 2 1 5 5 C 1.50702 * 126.28638 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.70883 * 359.13938 * 5 4 3 7 7 C 1.53298 * 109.67905 * 238.60364 * 5 4 3 8 8 O 1.42962 * 109.22229 * 187.97358 * 7 5 4 9 9 C 1.42966 * 114.16490 * 62.58002 * 8 7 5 10 10 C 1.53714 * 109.14917 * 297.28928 * 9 8 7 11 11 N 1.47145 * 109.67993 * 119.67878 * 5 4 3 12 12 C 1.34776 * 120.98555 * 350.23202 * 11 5 4 13 13 O 1.21589 * 119.99771 * 5.54729 * 12 11 5 14 14 N 1.34774 * 119.99953 * 185.55102 * 12 11 5 15 15 C 1.46506 * 119.99924 * 185.12925 * 14 12 11 16 16 C 1.52993 * 109.47482 * 179.97438 * 15 14 12 17 17 C 1.53004 * 109.47285 * 59.99447 * 16 15 14 18 18 C 1.53005 * 109.46834 * 299.99780 * 16 15 14 19 19 C 1.50697 * 109.47606 * 180.02562 * 16 15 14 20 20 H 1.08001 * 119.99718 * 5.56872 * 19 16 15 21 21 C 1.37872 * 120.00248 * 185.57343 * 19 16 15 22 22 N 1.31520 * 120.00158 * 151.42619 * 21 19 16 23 23 Si 1.86802 * 120.00106 * 331.42803 * 21 19 16 24 24 H 1.48497 * 109.46995 * 180.02562 * 23 21 19 25 25 H 1.48498 * 109.46954 * 60.00057 * 23 21 19 26 26 H 1.48501 * 109.46633 * 299.99993 * 23 21 19 27 27 N 1.29951 * 107.42483 * 0.24188 * 4 3 2 28 28 O 1.21307 * 110.24856 * 359.58163 * 27 4 3 29 29 H 1.09003 * 109.47354 * 89.99671 * 1 2 3 30 30 H 1.08999 * 109.47463 * 210.00133 * 1 2 3 31 31 H 1.09002 * 109.47316 * 329.99662 * 1 2 3 32 32 H 1.08999 * 109.51391 * 307.89610 * 7 5 4 33 33 H 1.09005 * 109.51510 * 67.99987 * 7 5 4 34 34 H 1.08998 * 109.50971 * 57.34309 * 9 8 7 35 35 H 1.08995 * 109.51276 * 177.44399 * 9 8 7 36 36 H 1.08997 * 109.83665 * 292.86041 * 10 9 8 37 37 H 1.08994 * 109.74788 * 172.16426 * 10 9 8 38 38 H 0.97001 * 120.00640 * 5.12378 * 14 12 11 39 39 H 1.08999 * 109.46918 * 59.99299 * 15 14 12 40 40 H 1.09001 * 109.46912 * 300.00218 * 15 14 12 41 41 H 1.09001 * 109.47311 * 174.12130 * 17 16 15 42 42 H 1.08999 * 109.47301 * 294.12422 * 17 16 15 43 43 H 1.09001 * 109.46555 * 54.12184 * 17 16 15 44 44 H 1.08990 * 109.47541 * 303.04269 * 18 16 15 45 45 H 1.09004 * 109.47316 * 63.04631 * 18 16 15 46 46 H 1.09007 * 109.46785 * 183.04003 * 18 16 15 47 47 H 0.97000 * 119.99920 * 354.98800 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2878 1.0534 0.0000 4 6 3.5441 0.5727 -0.0006 5 6 4.8111 1.3885 -0.0014 6 1 4.5648 2.4502 -0.0168 7 6 5.6516 1.0356 -1.2338 8 8 6.9279 1.6715 -1.1311 9 6 7.7068 1.2431 -0.0114 10 6 6.9696 1.6114 1.2862 11 7 5.5998 1.0802 1.2020 12 6 5.0810 0.3380 2.2002 13 8 3.9845 -0.1717 2.0722 14 7 5.7776 0.1608 3.3404 15 6 5.2657 -0.7359 4.3797 16 6 6.2395 -0.7578 5.5594 17 6 6.3820 0.6549 6.1295 18 6 7.6057 -1.2559 5.0837 19 6 5.7133 -1.6807 6.6283 20 1 4.8258 -2.2682 6.4453 21 6 6.3648 -1.7749 7.8397 22 7 5.6913 -2.0839 8.9263 23 14 8.2041 -1.4637 7.9377 24 1 8.6596 -1.6270 9.3417 25 1 8.4974 -0.0821 7.4792 26 1 8.9174 -2.4352 7.0702 27 7 3.4644 -0.7243 -0.0061 28 8 2.3028 -1.0737 -0.0006 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 5.7864 -0.0448 -1.2854 33 1 5.1426 1.3824 -2.1332 34 1 7.8489 0.1634 -0.0586 35 1 8.6771 1.7392 -0.0317 36 1 6.9368 2.6951 1.3981 37 1 7.4831 1.1690 2.1398 38 1 6.6178 0.6270 3.4728 39 1 5.1646 -1.7424 3.9736 40 1 4.2921 -0.3813 4.7182 41 1 6.9922 0.6227 7.0321 42 1 6.8596 1.2984 5.3907 43 1 5.3954 1.0500 6.3719 44 1 7.4954 -2.2401 4.6286 45 1 8.0110 -0.5595 4.3496 46 1 8.2843 -1.3229 5.9342 47 1 4.7262 -2.1741 8.8895 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364293810.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:24 Heat of formation + Delta-G solvation = 41.853576 kcal Electronic energy + Delta-G solvation = -31367.057513 eV Core-core repulsion = 27169.681296 eV Total energy + Delta-G solvation = -4197.376216 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.30824 -40.71669 -38.70557 -36.90620 -35.80638 -34.84475 -34.06035 -32.95941 -31.60281 -31.24488 -28.77165 -28.19436 -26.41468 -25.84148 -25.23444 -24.34939 -23.37361 -22.63897 -21.60088 -19.67345 -19.27114 -18.33946 -17.87184 -17.28026 -16.76343 -16.68388 -16.14021 -15.88237 -15.50194 -15.20996 -14.86497 -14.69745 -14.34547 -14.13870 -13.96293 -13.51613 -13.41769 -13.04170 -12.95865 -12.71712 -12.66897 -12.40745 -12.08823 -12.03679 -11.89036 -11.72184 -11.57555 -11.39484 -11.26859 -10.87209 -10.65653 -10.52759 -10.35932 -10.22627 -10.12543 -9.95952 -9.06861 -8.94624 -8.90886 -8.88303 -8.40053 -8.17025 -6.57372 -4.12754 1.44579 2.15624 2.75873 3.04478 3.22260 3.28739 3.35183 3.36909 3.58043 3.68530 4.04499 4.20897 4.38199 4.42154 4.60253 4.70293 4.76312 4.87019 5.05281 5.08993 5.12499 5.14771 5.20982 5.36890 5.40249 5.50451 5.65362 5.73387 5.88391 6.01889 6.03537 6.12645 6.18685 6.31802 6.39917 6.49596 6.59233 6.65323 6.67070 6.76023 6.88929 6.98457 7.21468 7.42743 8.04094 8.14126 8.31194 8.42666 8.74450 8.82800 9.50883 10.79689 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013467 B = 0.003647 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.732384 B = 7675.454443 C = 9300.943846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.165 3.835 3 N -0.481 5.481 4 C 0.186 3.814 5 C 0.228 3.772 6 H 0.107 0.893 7 C 0.059 3.941 8 O -0.371 6.371 9 C 0.045 3.955 10 C 0.079 3.921 11 N -0.637 5.637 12 C 0.708 3.292 13 O -0.582 6.582 14 N -0.733 5.733 15 C 0.163 3.837 16 C 0.035 3.965 17 C -0.140 4.140 18 C -0.146 4.146 19 C -0.607 4.607 20 H 0.060 0.940 21 C 0.044 3.956 22 N -0.887 5.887 23 Si 1.050 2.950 24 H -0.299 1.299 25 H -0.276 1.276 26 H -0.287 1.287 27 N -0.336 5.336 28 O 0.089 5.911 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.111 0.889 34 H 0.061 0.939 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.391 0.609 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.018 0.982 43 H 0.045 0.955 44 H 0.050 0.950 45 H 0.023 0.977 46 H 0.043 0.957 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.488 8.631 -21.116 22.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.055 4.055 3 N -0.216 5.216 4 C -0.087 4.087 5 C 0.122 3.878 6 H 0.124 0.876 7 C -0.020 4.020 8 O -0.289 6.289 9 C -0.032 4.032 10 C -0.045 4.045 11 N -0.379 5.379 12 C 0.409 3.591 13 O -0.459 6.459 14 N -0.389 5.389 15 C 0.040 3.960 16 C 0.034 3.966 17 C -0.198 4.198 18 C -0.203 4.203 19 C -0.645 4.645 20 H 0.078 0.922 21 C -0.164 4.164 22 N -0.518 5.518 23 Si 0.883 3.117 24 H -0.227 1.227 25 H -0.204 1.204 26 H -0.215 1.215 27 N -0.041 5.041 28 O 0.025 5.975 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.084 0.916 33 H 0.128 0.872 34 H 0.079 0.921 35 H 0.129 0.871 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.228 0.772 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.037 0.963 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.042 0.958 46 H 0.062 0.938 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.138 8.239 -20.221 21.835 hybrid contribution -1.059 -0.007 -0.475 1.161 sum -1.197 8.232 -20.696 22.305 Atomic orbital electron populations 1.20271 0.80896 1.05637 1.04695 1.28417 0.98465 0.80914 0.97688 1.71644 0.99908 1.29255 1.20831 1.24413 0.93772 0.88330 1.02184 1.19655 0.84576 0.97797 0.85818 0.87568 1.22977 0.84049 0.98470 0.96473 1.87986 1.28072 1.65987 1.46852 1.23126 0.94651 1.00477 0.84960 1.22470 0.82123 1.00281 0.99584 1.47328 1.14995 1.57308 1.18254 1.15895 0.84134 0.78851 0.80176 1.90913 1.20641 1.53732 1.80583 1.45693 1.26045 1.50288 1.16873 1.21407 0.97628 0.91226 0.85752 1.18662 0.91208 0.94184 0.92589 1.22226 1.00657 0.97066 0.99811 1.22337 0.99127 1.00050 0.98824 1.21606 1.15109 1.28636 0.99116 0.92196 1.25671 1.05583 0.93675 0.91444 1.70840 1.09991 1.42675 1.28337 0.84227 0.76669 0.76734 0.74087 1.22670 1.20404 1.21507 1.74476 0.96893 1.15395 1.17348 1.85229 1.11595 1.35677 1.65013 0.88589 0.88719 0.88223 0.91634 0.87151 0.92081 0.87071 0.90039 0.88812 0.77215 0.92667 0.92482 0.92438 0.96252 0.93608 0.93047 0.95816 0.93834 0.91783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.42 10.51 36.00 0.38 -0.04 16 2 C 0.17 2.19 8.51 -13.06 -0.11 2.08 16 3 N -0.48 -7.34 11.55 -9.86 -0.11 -7.46 16 4 C 0.19 2.94 4.64 -156.36 -0.73 2.21 16 5 C 0.23 3.02 3.62 -68.58 -0.25 2.78 16 6 H 0.11 1.31 8.14 -51.93 -0.42 0.88 16 7 C 0.06 0.64 6.27 37.31 0.23 0.88 16 8 O -0.37 -3.89 10.74 -35.23 -0.38 -4.27 16 9 C 0.05 0.40 7.00 37.53 0.26 0.67 16 10 C 0.08 0.80 6.55 -3.31 -0.02 0.77 16 11 N -0.64 -9.00 3.01 -171.49 -0.52 -9.51 16 12 C 0.71 12.81 8.21 -86.92 -0.71 12.10 16 13 O -0.58 -12.47 11.75 -4.93 -0.06 -12.53 16 14 N -0.73 -12.96 4.87 -65.22 -0.32 -13.28 16 15 C 0.16 3.47 4.51 -4.04 -0.02 3.45 16 16 C 0.04 0.79 0.50 -155.66 -0.08 0.71 16 17 C -0.14 -2.95 7.89 37.16 0.29 -2.66 16 18 C -0.15 -2.99 7.73 37.16 0.29 -2.70 16 19 C -0.61 -16.49 8.42 -34.44 -0.29 -16.78 16 20 H 0.06 1.78 7.99 -52.49 -0.42 1.36 16 21 C 0.04 1.22 5.08 -17.82 -0.09 1.13 16 22 N -0.89 -26.50 13.70 55.43 0.76 -25.74 16 23 Si 1.05 24.74 23.50 -169.99 -4.00 20.74 16 24 H -0.30 -7.23 7.11 56.52 0.40 -6.82 16 25 H -0.28 -5.91 5.70 56.52 0.32 -5.59 16 26 H -0.29 -6.43 6.68 56.52 0.38 -6.06 16 27 N -0.34 -5.80 9.86 30.91 0.30 -5.50 16 28 O 0.09 1.39 11.28 7.87 0.09 1.48 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.79 8.11 -51.93 -0.42 0.37 16 33 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.09 0.89 5.89 -51.93 -0.31 0.59 16 38 H 0.39 5.97 3.90 -40.82 -0.16 5.81 16 39 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.06 1.27 4.35 -51.93 -0.23 1.05 16 42 H 0.02 0.33 7.04 -51.93 -0.37 -0.03 16 43 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.02 0.39 6.95 -51.93 -0.36 0.03 16 46 H 0.04 0.92 2.31 -51.93 -0.12 0.80 16 47 H 0.27 8.11 8.73 -40.82 -0.36 7.76 16 LS Contribution 362.15 15.07 5.46 5.46 Total: -1.00 -34.90 362.15 -6.32 -41.22 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.71 Total: 4.79 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -0.84 Total: 4.60 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: 0.12 Total: -61.49 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.35 Total: -15.32 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -4.00 Total: 20.74 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.90 -6.32 -41.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364293810.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.073 kcal (2) G-P(sol) polarization free energy of solvation -34.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds