Wall clock time and date at job start Tue Mar 31 2020 21:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.31127 * 126.55264 * 2 1 4 4 C 1.34502 * 105.61480 * 180.02562 * 3 2 1 5 5 C 1.50702 * 126.28638 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.70883 * 359.13938 * 5 4 3 7 7 C 1.53298 * 109.67905 * 238.60364 * 5 4 3 8 8 O 1.42962 * 109.22229 * 187.97358 * 7 5 4 9 9 C 1.42966 * 114.16490 * 62.58002 * 8 7 5 10 10 C 1.53714 * 109.14917 * 297.28928 * 9 8 7 11 11 N 1.47145 * 109.67993 * 119.67878 * 5 4 3 12 12 C 1.34776 * 120.98555 * 350.23202 * 11 5 4 13 13 O 1.21589 * 119.99771 * 5.54729 * 12 11 5 14 14 N 1.34774 * 119.99953 * 185.55102 * 12 11 5 15 15 C 1.46506 * 119.99924 * 185.12925 * 14 12 11 16 16 C 1.52993 * 109.47482 * 179.97438 * 15 14 12 17 17 C 1.53004 * 109.47285 * 59.99447 * 16 15 14 18 18 C 1.53005 * 109.46834 * 299.99780 * 16 15 14 19 19 C 1.50697 * 109.47606 * 180.02562 * 16 15 14 20 20 H 1.08001 * 119.99718 * 5.56872 * 19 16 15 21 21 C 1.37872 * 120.00248 * 185.57343 * 19 16 15 22 22 N 1.31520 * 120.00158 * 151.42619 * 21 19 16 23 23 Si 1.86802 * 120.00106 * 331.42803 * 21 19 16 24 24 H 1.48497 * 109.46995 * 180.02562 * 23 21 19 25 25 H 1.48498 * 109.46954 * 60.00057 * 23 21 19 26 26 H 1.48501 * 109.46633 * 299.99993 * 23 21 19 27 27 N 1.29951 * 107.42483 * 0.24188 * 4 3 2 28 28 O 1.21307 * 110.24856 * 359.58163 * 27 4 3 29 29 H 1.09003 * 109.47354 * 89.99671 * 1 2 3 30 30 H 1.08999 * 109.47463 * 210.00133 * 1 2 3 31 31 H 1.09002 * 109.47316 * 329.99662 * 1 2 3 32 32 H 1.08999 * 109.51391 * 307.89610 * 7 5 4 33 33 H 1.09005 * 109.51510 * 67.99987 * 7 5 4 34 34 H 1.08998 * 109.50971 * 57.34309 * 9 8 7 35 35 H 1.08995 * 109.51276 * 177.44399 * 9 8 7 36 36 H 1.08997 * 109.83665 * 292.86041 * 10 9 8 37 37 H 1.08994 * 109.74788 * 172.16426 * 10 9 8 38 38 H 0.97001 * 120.00640 * 5.12378 * 14 12 11 39 39 H 1.08999 * 109.46918 * 59.99299 * 15 14 12 40 40 H 1.09001 * 109.46912 * 300.00218 * 15 14 12 41 41 H 1.09001 * 109.47311 * 174.12130 * 17 16 15 42 42 H 1.08999 * 109.47301 * 294.12422 * 17 16 15 43 43 H 1.09001 * 109.46555 * 54.12184 * 17 16 15 44 44 H 1.08990 * 109.47541 * 303.04269 * 18 16 15 45 45 H 1.09004 * 109.47316 * 63.04631 * 18 16 15 46 46 H 1.09007 * 109.46785 * 183.04003 * 18 16 15 47 47 H 0.97000 * 119.99920 * 354.98800 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2878 1.0534 0.0000 4 6 3.5441 0.5727 -0.0006 5 6 4.8111 1.3885 -0.0014 6 1 4.5648 2.4502 -0.0168 7 6 5.6516 1.0356 -1.2338 8 8 6.9279 1.6715 -1.1311 9 6 7.7068 1.2431 -0.0114 10 6 6.9696 1.6114 1.2862 11 7 5.5998 1.0802 1.2020 12 6 5.0810 0.3380 2.2002 13 8 3.9845 -0.1717 2.0722 14 7 5.7776 0.1608 3.3404 15 6 5.2657 -0.7359 4.3797 16 6 6.2395 -0.7578 5.5594 17 6 6.3820 0.6549 6.1295 18 6 7.6057 -1.2559 5.0837 19 6 5.7133 -1.6807 6.6283 20 1 4.8258 -2.2682 6.4453 21 6 6.3648 -1.7749 7.8397 22 7 5.6913 -2.0839 8.9263 23 14 8.2041 -1.4637 7.9377 24 1 8.6596 -1.6270 9.3417 25 1 8.4974 -0.0821 7.4792 26 1 8.9174 -2.4352 7.0702 27 7 3.4644 -0.7243 -0.0061 28 8 2.3028 -1.0737 -0.0006 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 5.7864 -0.0448 -1.2854 33 1 5.1426 1.3824 -2.1332 34 1 7.8489 0.1634 -0.0586 35 1 8.6771 1.7392 -0.0317 36 1 6.9368 2.6951 1.3981 37 1 7.4831 1.1690 2.1398 38 1 6.6178 0.6270 3.4728 39 1 5.1646 -1.7424 3.9736 40 1 4.2921 -0.3813 4.7182 41 1 6.9922 0.6227 7.0321 42 1 6.8596 1.2984 5.3907 43 1 5.3954 1.0500 6.3719 44 1 7.4954 -2.2401 4.6286 45 1 8.0110 -0.5595 4.3496 46 1 8.2843 -1.3229 5.9342 47 1 4.7262 -2.1741 8.8895 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364293810.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:23 Heat of formation + Delta-G solvation = 13.329051 kcal Electronic energy + Delta-G solvation = -31368.294429 eV Core-core repulsion = 27169.681296 eV Total energy + Delta-G solvation = -4198.613133 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.43175 -41.89535 -39.85544 -38.50794 -36.96159 -35.98438 -35.37694 -34.42441 -33.28188 -32.27887 -29.63916 -29.26304 -28.07046 -27.39386 -26.44018 -26.15227 -24.45739 -23.58699 -22.78171 -21.11964 -20.87429 -19.60009 -19.05525 -18.72262 -18.32303 -17.78231 -17.11377 -17.02136 -16.58813 -16.40594 -16.32537 -15.91737 -15.53948 -15.39459 -15.28246 -14.68646 -14.55289 -14.46190 -14.12412 -14.02894 -14.01241 -13.70010 -13.67491 -13.33798 -13.08216 -12.96689 -12.69033 -12.57196 -12.47218 -12.15516 -12.06383 -11.98460 -11.91895 -11.73552 -11.53314 -11.40247 -11.01712 -10.70158 -10.34321 -10.27576 -10.13078 -9.64758 -8.80434 -6.35526 0.37629 1.03886 1.41986 1.50567 1.58576 1.73697 1.97204 2.09253 2.36637 2.47611 2.73602 2.91439 2.97763 3.17146 3.49468 3.71413 3.87543 3.93782 4.03574 4.09748 4.20473 4.22473 4.35376 4.40396 4.50870 4.62476 4.63715 4.65931 4.70640 4.73379 4.74989 4.77491 4.80867 4.85529 4.99581 5.07233 5.08460 5.13174 5.18656 5.34904 5.46672 5.64504 5.71966 5.88719 5.99118 6.11427 6.53202 6.78606 7.32017 7.37468 7.38323 8.55395 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013467 B = 0.003647 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.732384 B = 7675.454443 C = 9300.943846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.171 3.829 3 N -0.507 5.507 4 C 0.181 3.819 5 C 0.222 3.778 6 H 0.118 0.882 7 C 0.071 3.929 8 O -0.373 6.373 9 C 0.045 3.955 10 C 0.071 3.929 11 N -0.631 5.631 12 C 0.700 3.300 13 O -0.620 6.620 14 N -0.722 5.722 15 C 0.185 3.815 16 C 0.034 3.966 17 C -0.136 4.136 18 C -0.145 4.145 19 C -0.615 4.615 20 H 0.011 0.989 21 C -0.005 4.005 22 N -0.924 5.924 23 Si 1.087 2.913 24 H -0.310 1.310 25 H -0.231 1.231 26 H -0.265 1.265 27 N -0.369 5.369 28 O 0.068 5.932 29 H 0.129 0.871 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.050 0.950 33 H 0.130 0.870 34 H 0.053 0.947 35 H 0.147 0.853 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.407 0.593 39 H 0.029 0.971 40 H 0.024 0.976 41 H 0.050 0.950 42 H 0.064 0.936 43 H 0.028 0.972 44 H 0.042 0.958 45 H 0.070 0.930 46 H 0.043 0.957 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.140 11.112 -23.245 25.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.048 4.048 3 N -0.242 5.242 4 C -0.092 4.092 5 C 0.116 3.884 6 H 0.136 0.864 7 C -0.008 4.008 8 O -0.290 6.290 9 C -0.032 4.032 10 C -0.050 4.050 11 N -0.372 5.372 12 C 0.402 3.598 13 O -0.500 6.500 14 N -0.379 5.379 15 C 0.060 3.940 16 C 0.032 3.968 17 C -0.194 4.194 18 C -0.201 4.201 19 C -0.652 4.652 20 H 0.029 0.971 21 C -0.205 4.205 22 N -0.557 5.557 23 Si 0.912 3.088 24 H -0.239 1.239 25 H -0.156 1.156 26 H -0.192 1.192 27 N -0.078 5.078 28 O 0.008 5.992 29 H 0.147 0.853 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.069 0.931 33 H 0.148 0.852 34 H 0.072 0.928 35 H 0.165 0.835 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.246 0.754 39 H 0.048 0.952 40 H 0.043 0.957 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.047 0.953 44 H 0.061 0.939 45 H 0.088 0.912 46 H 0.061 0.939 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.497 10.759 -22.415 24.989 hybrid contribution -2.058 -0.790 0.124 2.208 sum 0.439 9.969 -22.292 24.423 Atomic orbital electron populations 1.20636 0.77025 1.06636 1.07071 1.29560 1.00279 0.79920 0.95082 1.71660 1.00127 1.30068 1.22394 1.24908 0.94845 0.88300 1.01168 1.19991 0.84114 0.97936 0.86352 0.86429 1.22883 0.84229 0.97678 0.96011 1.87999 1.27643 1.65864 1.47507 1.23315 0.95584 1.00588 0.83675 1.22852 0.79836 1.01561 1.00796 1.47375 1.16529 1.56077 1.17202 1.16094 0.83733 0.79158 0.80797 1.90901 1.22491 1.55256 1.81333 1.45272 1.26587 1.49941 1.16144 1.20823 0.96214 0.90533 0.86397 1.18593 0.92648 0.94131 0.91421 1.22129 1.00178 0.96397 1.00669 1.22240 0.97131 1.00867 0.99906 1.21810 1.13461 1.28878 1.01070 0.97093 1.27144 1.09658 0.92793 0.90901 1.70976 1.09025 1.45915 1.29769 0.83821 0.71187 0.79708 0.74081 1.23942 1.15556 1.19191 1.74426 0.97767 1.16355 1.19226 1.85171 1.11674 1.36594 1.65754 0.85305 0.87326 0.87440 0.93130 0.85229 0.92829 0.83511 0.87775 0.87804 0.75393 0.95227 0.95711 0.93108 0.91704 0.95300 0.93861 0.91158 0.93906 0.93652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.75 10.51 71.23 0.75 0.00 16 2 C 0.17 4.53 8.51 88.38 0.75 5.29 16 3 N -0.51 -15.45 11.55 -303.16 -3.50 -18.96 16 4 C 0.18 5.72 4.64 138.46 0.64 6.36 16 5 C 0.22 5.58 3.62 44.22 0.16 5.74 16 6 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 7 C 0.07 1.41 6.27 72.08 0.45 1.86 16 8 O -0.37 -6.59 10.74 -148.98 -1.60 -8.19 16 9 C 0.05 0.63 7.00 72.22 0.51 1.13 16 10 C 0.07 1.15 6.55 86.49 0.57 1.72 16 11 N -0.63 -16.59 3.01 -814.73 -2.46 -19.04 16 12 C 0.70 24.86 8.21 179.06 1.47 26.33 16 13 O -0.62 -27.19 11.75 5.77 0.07 -27.12 16 14 N -0.72 -24.37 4.87 -478.53 -2.33 -26.70 16 15 C 0.18 8.01 4.51 86.38 0.39 8.40 16 16 C 0.03 1.48 0.50 -52.93 -0.03 1.45 16 17 C -0.14 -5.39 7.89 71.98 0.57 -4.82 16 18 C -0.14 -5.41 7.73 71.98 0.56 -4.85 16 19 C -0.61 -34.52 8.42 25.60 0.22 -34.31 16 20 H 0.01 0.69 7.99 -2.91 -0.02 0.67 16 21 C 0.00 -0.26 5.08 84.65 0.43 0.17 16 22 N -0.92 -57.40 13.70 21.45 0.29 -57.10 16 23 Si 1.09 48.19 23.50 68.60 1.61 49.80 16 24 H -0.31 -14.37 7.11 99.48 0.71 -13.67 16 25 H -0.23 -8.58 5.70 99.48 0.57 -8.01 16 26 H -0.27 -10.82 6.68 99.48 0.66 -10.15 16 27 N -0.37 -13.07 9.86 -60.27 -0.59 -13.66 16 28 O 0.07 2.20 11.28 84.55 0.95 3.16 16 29 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.05 1.17 8.11 -2.39 -0.02 1.15 16 33 H 0.13 2.04 8.14 -2.38 -0.02 2.02 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.15 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.10 1.47 5.89 -2.39 -0.01 1.46 16 38 H 0.41 10.84 3.90 -92.71 -0.36 10.48 16 39 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.05 2.08 4.35 -2.39 -0.01 2.07 16 42 H 0.06 1.96 7.04 -2.39 -0.02 1.94 16 43 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.04 1.67 8.14 -2.39 -0.02 1.66 16 45 H 0.07 1.97 6.95 -2.38 -0.02 1.95 16 46 H 0.04 1.63 2.31 -2.38 -0.01 1.62 16 47 H 0.25 16.18 8.73 -92.71 -0.81 15.37 16 Total: -1.00 -82.22 362.15 0.30 -81.92 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.43 Total: 21.41 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 7.43 Total: 14.48 kcal Atomic # 7 Polarization: -126.87 SS G_CDS: -8.59 Total: -135.46 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -0.58 Total: -32.15 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 1.61 Total: 49.80 kcal Total: -82.22 0.30 -81.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364293810.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.245 kcal (2) G-P(sol) polarization free energy of solvation -82.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds