Wall clock time and date at job start Tue Mar 31 2020 20:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.55594 * 2 1 4 4 C 1.53298 * 109.51383 * 120.12746 * 2 1 3 5 5 N 1.47150 * 108.41390 * 172.24257 * 4 2 1 6 6 C 1.34780 * 120.97801 * 129.42595 * 5 4 2 7 7 O 1.21592 * 120.00194 * 354.78378 * 6 5 4 8 8 N 1.34777 * 120.00000 * 174.78102 * 6 5 4 9 9 C 1.40198 * 120.00185 * 185.11869 * 8 6 5 10 10 C 1.40399 * 125.96854 * 359.71828 * 9 8 6 11 11 C 1.35246 * 107.86272 * 179.82996 * 10 9 8 12 12 N 1.34970 * 107.85857 * 0.42846 * 11 10 9 13 13 C 1.46496 * 125.97411 * 179.75329 * 12 11 10 14 14 C 1.50702 * 109.47474 * 125.00113 * 13 12 11 15 15 H 1.07998 * 119.99259 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00250 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99644 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 119.99922 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47380 * 90.00091 * 18 16 14 20 20 H 1.48502 * 109.46928 * 210.00278 * 18 16 14 21 21 H 1.48501 * 109.47217 * 329.99872 * 18 16 14 22 22 N 1.31211 * 125.96946 * 180.02562 * 9 8 6 23 23 C 1.47147 * 118.03903 * 309.44063 * 5 4 2 24 24 C 1.53298 * 108.38372 * 50.54096 * 23 5 4 25 25 H 1.09004 * 109.51414 * 67.66551 * 24 23 5 26 26 C 1.52996 * 109.51430 * 187.77356 * 24 23 5 27 27 O 1.42902 * 109.47213 * 184.99932 * 26 24 23 28 28 O 1.42965 * 109.22220 * 307.69764 * 24 23 5 29 29 H 1.08998 * 109.47544 * 299.87525 * 1 2 3 30 30 H 1.09004 * 109.47370 * 59.87174 * 1 2 3 31 31 H 1.09006 * 109.47471 * 179.87614 * 1 2 3 32 32 H 1.09000 * 109.47186 * 180.13229 * 3 2 1 33 33 H 1.09004 * 109.46889 * 300.12730 * 3 2 1 34 34 H 1.08999 * 109.47109 * 60.12452 * 3 2 1 35 35 H 1.09002 * 109.68106 * 52.50206 * 4 2 1 36 36 H 1.08998 * 109.68204 * 291.98667 * 4 2 1 37 37 H 0.97005 * 119.99808 * 5.12132 * 8 6 5 38 38 H 1.07996 * 126.07083 * 359.97438 * 10 9 8 39 39 H 1.08001 * 126.07137 * 180.13911 * 11 10 9 40 40 H 1.09003 * 109.47044 * 244.99476 * 13 12 11 41 41 H 1.09000 * 109.47839 * 4.99319 * 13 12 11 42 42 H 0.96999 * 119.99305 * 180.02562 * 17 16 14 43 43 H 1.08999 * 109.68147 * 170.25933 * 23 5 4 44 44 H 1.08992 * 109.68760 * 290.78165 * 23 5 4 45 45 H 1.08995 * 109.46951 * 304.99604 * 26 24 23 46 46 H 1.08999 * 109.47228 * 64.99777 * 26 24 23 47 47 H 0.96692 * 114.00169 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0421 1.4417 0.0000 4 6 2.0420 -0.7252 1.2497 5 7 3.5012 -0.8762 1.1344 6 6 4.3188 -0.5031 2.1388 7 8 3.8627 0.0528 3.1194 8 7 5.6419 -0.7462 2.0565 9 6 6.4770 -0.4563 3.1446 10 6 6.0717 0.0917 4.3721 11 6 7.1685 0.2144 5.1539 12 7 8.2309 -0.2285 4.4490 13 6 9.6184 -0.2678 4.9174 14 6 10.1557 -1.6691 4.7795 15 1 9.5262 -2.4520 4.3831 16 6 11.4507 -1.9514 5.1595 17 7 11.9192 -3.1744 5.0396 18 14 12.5394 -0.5969 5.8444 19 1 12.3836 -0.5350 7.3199 20 1 13.9571 -0.8838 5.5079 21 1 12.1433 0.7049 5.2497 22 7 7.7747 -0.6445 3.1917 23 6 4.0414 -1.4462 -0.1100 24 6 3.4327 -0.6863 -1.2940 25 1 3.8051 0.3382 -1.2993 26 6 3.8234 -1.3789 -2.6011 27 8 3.3545 -0.6064 -3.7082 28 8 2.0089 -0.6771 -1.1656 29 1 -0.3634 0.5119 0.8911 30 1 -0.3634 0.5158 -0.8888 31 1 -0.3634 -1.0277 -0.0022 32 1 3.1321 1.4401 -0.0024 33 1 1.6776 1.9567 -0.8889 34 1 1.6813 1.9554 0.8911 35 1 1.5757 -1.7079 1.3208 36 1 1.8025 -0.1402 2.1377 37 1 6.0163 -1.1217 1.2442 38 1 5.0630 0.3645 4.6445 39 1 7.1910 0.6026 6.1615 40 1 10.2233 0.4136 4.3190 41 1 9.6576 0.0351 5.9637 42 1 12.8301 -3.3730 5.3073 43 1 5.1259 -1.3380 -0.1228 44 1 3.7770 -2.5016 -0.1755 45 1 4.9084 -1.4687 -2.6544 46 1 3.3745 -2.3716 -2.6346 47 1 3.5676 -0.9866 -4.5713 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365127413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:47 Heat of formation + Delta-G solvation = -43.789231 kcal Electronic energy + Delta-G solvation = -29902.878140 eV Core-core repulsion = 25701.788172 eV Total energy + Delta-G solvation = -4201.089967 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.43296 -41.66453 -40.09310 -37.71957 -36.36870 -36.08629 -35.18353 -34.71266 -33.03107 -31.18865 -30.99144 -29.13267 -28.40505 -27.67523 -26.67608 -24.54229 -22.95073 -22.92607 -21.90467 -21.08261 -20.37786 -19.32608 -19.11028 -18.47835 -18.07864 -17.82893 -17.24715 -17.01994 -16.51037 -16.23593 -15.99669 -15.85960 -15.58257 -15.33565 -15.15371 -14.82854 -14.65021 -14.37331 -14.35966 -13.89352 -13.84615 -13.64607 -13.21291 -13.16146 -13.03039 -12.95803 -12.82122 -12.52755 -12.37791 -12.32951 -12.11025 -11.83686 -11.66946 -11.61616 -11.46711 -11.20863 -11.06647 -10.89275 -10.86567 -9.85948 -9.67014 -9.05227 -8.37210 -6.47263 0.94858 1.04103 1.37084 1.39868 1.49567 1.61787 1.89875 2.29119 2.30664 2.51504 2.65711 2.95537 3.14255 3.60259 3.73680 3.83947 3.87416 3.92806 4.04256 4.12095 4.19289 4.24389 4.40267 4.48379 4.49240 4.60273 4.62170 4.71131 4.73361 4.74441 4.83769 4.86093 4.90566 4.91611 4.95410 5.04124 5.15974 5.24108 5.27064 5.37782 5.60282 5.88048 6.01068 6.16085 6.40108 6.47871 6.59270 6.91641 7.03087 7.15728 7.25173 8.79877 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018920 B = 0.002388 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.566866 B =11720.334904 C =12652.696179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.099 3.901 3 C -0.170 4.170 4 C 0.106 3.894 5 N -0.619 5.619 6 C 0.718 3.282 7 O -0.590 6.590 8 N -0.639 5.639 9 C 0.283 3.717 10 C -0.292 4.292 11 C 0.062 3.938 12 N -0.344 5.344 13 C 0.239 3.761 14 C -0.546 4.546 15 H 0.027 0.973 16 C 0.015 3.985 17 N -0.942 5.942 18 Si 0.955 3.045 19 H -0.253 1.253 20 H -0.281 1.281 21 H -0.239 1.239 22 N -0.348 5.348 23 C 0.078 3.922 24 C 0.075 3.925 25 H 0.061 0.939 26 C 0.086 3.914 27 O -0.589 6.589 28 O -0.369 6.369 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.042 0.958 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.416 0.584 38 H 0.167 0.833 39 H 0.211 0.789 40 H 0.045 0.955 41 H 0.082 0.918 42 H 0.272 0.728 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.085 0.915 46 H 0.069 0.931 47 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.302 7.156 -13.531 26.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.059 3.941 3 C -0.227 4.227 4 C -0.017 4.017 5 N -0.356 5.356 6 C 0.420 3.580 7 O -0.468 6.468 8 N -0.292 5.292 9 C 0.027 3.973 10 C -0.324 4.324 11 C -0.086 4.086 12 N -0.126 5.126 13 C 0.120 3.880 14 C -0.584 4.584 15 H 0.045 0.955 16 C -0.184 4.184 17 N -0.581 5.581 18 Si 0.776 3.224 19 H -0.178 1.178 20 H -0.207 1.207 21 H -0.162 1.162 22 N -0.178 5.178 23 C -0.045 4.045 24 C 0.017 3.983 25 H 0.079 0.921 26 C 0.008 3.992 27 O -0.397 6.397 28 O -0.288 6.288 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.255 0.745 38 H 0.185 0.815 39 H 0.228 0.772 40 H 0.063 0.937 41 H 0.100 0.900 42 H 0.081 0.919 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.103 0.897 46 H 0.088 0.912 47 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -20.704 7.304 -13.055 25.543 hybrid contribution 0.825 -0.315 -0.071 0.886 sum -19.879 6.989 -13.126 24.826 Atomic orbital electron populations 1.21719 0.89562 1.03848 1.03778 1.22028 0.96604 0.91091 0.84348 1.22310 1.00824 0.96401 1.03161 1.22414 0.77032 1.02435 0.99777 1.47170 1.06861 1.66164 1.15423 1.15563 0.80016 0.79091 0.83362 1.90823 1.75180 1.47909 1.32866 1.41563 1.05221 1.66537 1.15867 1.19112 0.89212 0.99371 0.89596 1.21699 1.00990 1.16053 0.93613 1.23243 0.85947 0.99282 1.00101 1.48498 1.08577 1.46642 1.08905 1.19892 0.74578 0.97060 0.96507 1.21229 0.98907 0.94020 1.44260 0.95486 1.25912 0.98894 0.98572 0.95050 1.70049 1.17546 1.21985 1.48525 0.85624 0.77551 0.79346 0.79913 1.17760 1.20671 1.16248 1.77295 1.09312 1.27497 1.03738 1.22467 0.99700 0.99614 0.82711 1.22489 0.82417 0.99489 0.93947 0.92113 1.22138 0.99066 0.94052 0.83980 1.86462 1.82416 1.52922 1.17942 1.88064 1.20221 1.76734 1.43775 0.89271 0.91195 0.90869 0.93942 0.91385 0.90832 0.89254 0.88424 0.74480 0.81537 0.77189 0.93670 0.90017 0.91895 0.88287 0.87951 0.89660 0.91242 0.74961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 8.86 71.98 0.64 -0.98 16 2 C 0.10 1.69 1.12 -10.70 -0.01 1.67 16 3 C -0.17 -3.13 8.10 71.98 0.58 -2.55 16 4 C 0.11 2.00 5.32 86.36 0.46 2.46 16 5 N -0.62 -13.57 2.54 -835.35 -2.12 -15.69 16 6 C 0.72 21.46 8.28 179.05 1.48 22.94 16 7 O -0.59 -20.90 12.96 -4.01 -0.05 -20.95 16 8 N -0.64 -20.25 5.36 -321.22 -1.72 -21.98 16 9 C 0.28 11.39 8.11 133.31 1.08 12.47 16 10 C -0.29 -11.25 9.61 22.11 0.21 -11.04 16 11 C 0.06 2.30 11.44 83.52 0.96 3.26 16 12 N -0.34 -15.42 3.67 -351.84 -1.29 -16.71 16 13 C 0.24 11.03 5.33 85.63 0.46 11.48 16 14 C -0.55 -31.37 9.79 25.60 0.25 -31.12 16 15 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 16 C 0.01 0.82 5.47 84.66 0.46 1.28 16 17 N -0.94 -57.79 13.96 21.45 0.30 -57.49 16 18 Si 0.95 40.46 27.47 68.60 1.88 42.34 16 19 H -0.25 -9.98 7.11 99.48 0.71 -9.28 16 20 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 21 H -0.24 -9.14 6.54 99.48 0.65 -8.49 16 22 N -0.35 -16.15 12.42 -54.43 -0.68 -16.83 16 23 C 0.08 1.26 5.86 86.36 0.51 1.76 16 24 C 0.08 1.26 2.67 30.69 0.08 1.34 16 25 H 0.06 1.20 6.25 -2.38 -0.01 1.19 16 26 C 0.09 1.04 6.71 71.98 0.48 1.52 16 27 O -0.59 -8.70 13.63 -144.70 -1.97 -10.68 16 28 O -0.37 -7.02 9.84 -144.70 -1.42 -8.45 16 29 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.04 0.93 6.11 -2.39 -0.01 0.91 16 33 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.10 2.05 7.06 -2.39 -0.02 2.03 16 37 H 0.42 10.94 6.38 -92.70 -0.59 10.35 16 38 H 0.17 6.25 5.93 -2.91 -0.02 6.24 16 39 H 0.21 5.67 8.06 -2.91 -0.02 5.64 16 40 H 0.05 2.04 7.20 -2.39 -0.02 2.02 16 41 H 0.08 3.22 7.50 -2.39 -0.02 3.21 16 42 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 43 H 0.10 1.40 5.77 -2.39 -0.01 1.39 16 44 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.40 2.05 9.12 -74.06 -0.68 1.37 16 Total: -1.00 -81.40 378.26 0.26 -81.14 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: -0.31 Total: 30.77 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 7.64 Total: 14.50 kcal Atomic # 7 Polarization: -123.18 SS G_CDS: -5.51 Total: -128.69 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -3.45 Total: -40.07 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 1.88 Total: 42.34 kcal Total: -81.40 0.26 -81.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365127413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.355 kcal (2) G-P(sol) polarization free energy of solvation -81.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds