Wall clock time and date at job start Tue Mar 31 2020 21:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29945 * 126.28374 * 2 1 4 4 O 1.21300 * 110.24933 * 180.02562 * 3 2 1 5 5 C 1.33646 * 109.81324 * 0.02562 * 4 3 2 6 6 C 1.50696 * 126.55158 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.47043 * 195.02493 * 6 5 4 8 8 N 1.46500 * 109.47324 * 315.02472 * 6 5 4 9 9 C 1.34773 * 120.00050 * 205.00095 * 8 6 5 10 10 O 1.21584 * 120.00245 * 359.97438 * 9 8 6 11 11 N 1.34775 * 120.00055 * 179.97438 * 9 8 6 12 12 C 1.47427 * 125.65085 * 359.69202 * 11 9 8 13 13 C 1.55124 * 104.72404 * 155.81264 * 12 11 9 14 14 C 1.55153 * 101.48606 * 37.30234 * 13 12 11 15 15 O 1.42901 * 110.72493 * 82.69217 * 14 13 12 16 16 C 1.50699 * 110.87550 * 205.89742 * 14 13 12 17 17 H 1.08003 * 119.99777 * 355.06140 * 16 14 13 18 18 C 1.37877 * 120.00745 * 175.06069 * 16 14 13 19 19 N 1.31517 * 119.99564 * 359.97438 * 18 16 14 20 20 Si 1.86796 * 120.00375 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47203 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47296 * 119.99934 * 20 18 16 23 23 H 1.48504 * 109.46810 * 239.99884 * 20 18 16 24 24 C 1.47030 * 125.65134 * 179.97438 * 11 9 8 25 25 C 1.52997 * 109.47055 * 75.02413 * 6 5 4 26 26 C 1.53006 * 109.47127 * 179.97438 * 25 6 5 27 27 C 1.52999 * 109.46991 * 60.00330 * 25 6 5 28 28 N 1.31129 * 106.89591 * 0.22951 * 5 4 3 29 29 H 1.08997 * 109.47372 * 89.97343 * 1 2 3 30 30 H 1.09005 * 109.47039 * 209.97500 * 1 2 3 31 31 H 1.08998 * 109.47015 * 329.97141 * 1 2 3 32 32 H 0.97002 * 120.00030 * 24.99996 * 8 6 5 33 33 H 1.08997 * 110.37093 * 274.74961 * 12 11 9 34 34 H 1.09000 * 110.36428 * 37.06712 * 12 11 9 35 35 H 1.08997 * 111.20067 * 279.19232 * 13 12 11 36 36 H 1.09010 * 110.90381 * 155.27545 * 13 12 11 37 37 H 0.96705 * 113.99995 * 185.02915 * 15 14 13 38 38 H 0.96992 * 119.99996 * 179.97438 * 19 18 16 39 39 H 1.08996 * 109.88113 * 300.44620 * 24 11 9 40 40 H 1.09003 * 109.87937 * 61.45187 * 24 11 9 41 41 H 1.08993 * 109.47194 * 299.99487 * 25 6 5 42 42 H 1.09001 * 109.46801 * 300.00272 * 26 25 6 43 43 H 1.09001 * 109.46998 * 59.99868 * 26 25 6 44 44 H 1.09000 * 109.47050 * 180.02562 * 26 25 6 45 45 H 1.09000 * 109.47160 * 179.97438 * 27 25 6 46 46 H 1.09002 * 109.46719 * 299.99711 * 27 25 6 47 47 H 1.08993 * 109.47839 * 59.99553 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4418 0.7124 -0.0005 5 6 3.5299 -0.6211 -0.0015 6 6 4.7970 -1.4369 -0.0029 7 1 4.5650 -2.4679 -0.2698 8 7 5.7358 -0.8790 -0.9794 9 6 6.6824 -1.6651 -1.5293 10 8 6.7575 -2.8371 -1.2147 11 7 7.5458 -1.1520 -2.4280 12 6 7.5638 0.2436 -2.9026 13 6 9.0205 0.4786 -3.3814 14 6 9.3619 -0.8948 -4.0175 15 8 8.8643 -0.9703 -5.3549 16 6 10.8476 -1.1455 -3.9885 17 1 11.5182 -0.3765 -3.6344 18 6 11.3509 -2.3565 -4.4140 19 7 10.5343 -3.2932 -4.8446 20 14 13.1924 -2.6675 -4.3774 21 1 13.8873 -1.4642 -3.8535 22 1 13.4810 -3.8285 -3.4977 23 1 13.6730 -2.9567 -5.7524 24 6 8.6222 -1.8929 -3.1020 25 6 5.4285 -1.4004 1.3902 26 6 6.7147 -2.2292 1.3890 27 6 4.4480 -1.9831 2.4100 28 7 2.3030 -1.0841 -0.0065 29 1 -0.3634 0.0005 -1.0276 30 1 -0.3633 -0.8903 0.5135 31 1 -0.3633 0.8897 0.5143 32 1 5.6762 0.0561 -1.2302 33 1 6.8649 0.3724 -3.7290 34 1 7.3183 0.9246 -2.0876 35 1 9.6811 0.6954 -2.5420 36 1 9.0619 1.2746 -4.1249 37 1 8.9835 -1.8352 -5.7707 38 1 10.8883 -4.1450 -5.1443 39 1 9.3120 -2.2992 -2.3624 40 1 8.1988 -2.7018 -3.6975 41 1 5.6605 -0.3694 1.6571 42 1 6.4822 -3.2602 1.1222 43 1 7.4133 -1.8145 0.6623 44 1 7.1643 -2.2036 2.3816 45 1 4.8981 -1.9576 3.4024 46 1 3.5315 -1.3930 2.4110 47 1 4.2160 -3.0141 2.1431 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365283864.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:51 Heat of formation + Delta-G solvation = -8.692010 kcal Electronic energy + Delta-G solvation = -30697.653479 eV Core-core repulsion = 26498.085442 eV Total energy + Delta-G solvation = -4199.568037 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.86571 -40.14166 -38.05530 -36.61999 -36.19810 -34.35075 -33.33164 -32.83213 -32.24037 -30.06708 -29.47268 -27.98033 -27.35710 -26.85566 -24.84534 -23.87523 -22.74689 -22.10950 -20.30907 -19.81608 -19.60435 -18.36517 -18.14503 -17.34593 -17.08696 -16.22941 -15.72642 -15.61398 -15.10015 -14.49359 -14.41171 -14.32595 -14.04699 -13.91767 -13.55240 -13.17472 -12.96729 -12.91595 -12.90348 -12.69557 -12.39065 -12.22947 -12.02615 -11.87148 -11.69296 -11.55689 -11.44912 -11.29685 -11.08388 -11.01793 -10.92172 -10.79504 -10.69463 -10.47768 -10.21259 -10.17671 -9.69977 -9.34388 -9.09130 -8.69888 -8.33904 -7.86067 -6.29672 -4.38096 0.82352 1.91796 2.44641 2.73488 3.19859 3.28932 3.32040 3.44802 3.57061 3.77424 4.23054 4.29739 4.51608 4.58281 4.81286 4.98084 5.03869 5.04288 5.08597 5.23175 5.26366 5.33628 5.45546 5.58358 5.64294 5.65637 5.70761 5.73307 5.77638 5.92038 5.97311 5.99731 6.03124 6.21037 6.39373 6.47776 6.56880 6.67260 6.84874 6.89931 7.18134 7.27580 7.50895 7.72025 7.88081 8.01515 8.37584 8.65623 8.95707 9.27888 9.36756 10.78130 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019865 B = 0.002827 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.147233 B = 9903.832678 C =10614.779779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.168 3.832 3 N -0.384 5.384 4 O 0.079 5.921 5 C 0.186 3.814 6 C 0.267 3.733 7 H 0.133 0.867 8 N -0.750 5.750 9 C 0.722 3.278 10 O -0.584 6.584 11 N -0.626 5.626 12 C 0.100 3.900 13 C -0.115 4.115 14 C 0.247 3.753 15 O -0.585 6.585 16 C -0.536 4.536 17 H 0.067 0.933 18 C 0.070 3.930 19 N -0.893 5.893 20 Si 0.903 3.097 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.123 3.877 25 C -0.103 4.103 26 C -0.135 4.135 27 C -0.146 4.146 28 N -0.469 5.469 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.398 0.602 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.382 0.618 38 H 0.270 0.730 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.051 0.949 45 H 0.064 0.936 46 H 0.046 0.954 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.858 6.091 11.271 19.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.105 4.105 3 N -0.092 5.092 4 O 0.021 5.979 5 C -0.035 4.035 6 C 0.159 3.841 7 H 0.151 0.849 8 N -0.408 5.408 9 C 0.424 3.576 10 O -0.462 6.462 11 N -0.363 5.363 12 C -0.023 4.023 13 C -0.153 4.153 14 C 0.207 3.793 15 O -0.394 6.394 16 C -0.575 4.575 17 H 0.085 0.915 18 C -0.133 4.133 19 N -0.532 5.532 20 Si 0.730 3.270 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C 0.002 3.998 25 C -0.124 4.124 26 C -0.193 4.193 27 C -0.203 4.203 28 N -0.204 5.204 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.233 0.767 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.233 0.767 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.083 0.917 46 H 0.065 0.935 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.631 6.116 11.556 20.378 hybrid contribution 1.119 -0.362 -0.269 1.206 sum -14.512 5.754 11.287 19.264 Atomic orbital electron populations 1.20149 0.82787 1.04681 1.04439 1.25968 1.00677 0.83402 1.00467 1.74644 0.89301 1.23852 1.21431 1.85284 1.22497 1.24635 1.65466 1.28926 0.97004 0.82126 0.95488 1.19302 0.78777 0.95611 0.90445 0.84949 1.45092 1.34853 1.13783 1.47095 1.15275 0.78951 0.84395 0.78971 1.90922 1.74551 1.14910 1.65783 1.47985 1.33521 1.12153 1.42600 1.22332 0.99590 0.82618 0.97786 1.22757 0.93215 0.99244 1.00096 1.19522 0.91444 0.88505 0.79846 1.86111 1.84416 1.39522 1.29331 1.21514 0.91338 1.00232 1.44367 0.91500 1.25072 0.98828 0.95617 0.93774 1.69702 1.34916 1.05895 1.42644 0.86358 0.84428 0.78335 0.77850 1.19610 1.20759 1.20781 1.22916 0.85861 0.95614 0.95453 1.21630 0.97129 1.01556 0.92098 1.21835 0.95351 1.00811 1.01268 1.21830 0.98109 1.01587 0.98823 1.71916 0.99291 1.29302 1.19855 0.89215 0.88919 0.89481 0.76690 0.91890 0.92454 0.90370 0.90588 0.76739 0.92045 0.91533 0.91732 0.90411 0.91172 0.91698 0.93000 0.91743 0.93463 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.44 10.51 36.00 0.38 -0.06 16 2 C 0.17 1.90 8.22 -156.37 -1.28 0.62 16 3 N -0.38 -4.79 12.16 30.90 0.38 -4.41 16 4 O 0.08 0.97 11.13 18.09 0.20 1.17 16 5 C 0.19 2.27 6.00 -13.06 -0.08 2.19 16 6 C 0.27 3.33 2.38 -69.09 -0.16 3.17 16 7 H 0.13 1.85 7.58 -51.93 -0.39 1.45 16 8 N -0.75 -10.41 4.92 -59.82 -0.29 -10.70 16 9 C 0.72 13.14 6.84 -86.92 -0.59 12.55 16 10 O -0.58 -12.30 13.79 5.29 0.07 -12.22 16 11 N -0.63 -12.07 3.33 -176.10 -0.59 -12.65 16 12 C 0.10 1.65 6.58 -2.41 -0.02 1.64 16 13 C -0.12 -2.18 6.24 -24.47 -0.15 -2.33 16 14 C 0.25 5.75 0.85 -89.94 -0.08 5.67 16 15 O -0.59 -14.27 13.07 -35.23 -0.46 -14.73 16 16 C -0.54 -13.60 8.13 -34.44 -0.28 -13.88 16 17 H 0.07 1.68 7.78 -52.48 -0.41 1.27 16 18 C 0.07 1.80 5.28 -17.82 -0.09 1.70 16 19 N -0.89 -23.27 10.96 55.43 0.61 -22.66 16 20 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 24 C 0.12 2.86 5.23 -3.06 -0.02 2.84 16 25 C -0.10 -1.14 2.68 -90.62 -0.24 -1.39 16 26 C -0.14 -1.77 7.71 37.16 0.29 -1.48 16 27 C -0.15 -1.40 8.95 37.16 0.33 -1.07 16 28 N -0.47 -5.89 11.55 -9.87 -0.11 -6.00 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.40 4.85 6.92 -40.82 -0.28 4.56 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.75 7.29 -51.93 -0.38 0.37 16 35 H 0.08 1.42 8.04 -51.93 -0.42 1.00 16 36 H 0.08 1.37 8.14 -51.92 -0.42 0.95 16 37 H 0.38 9.59 7.45 45.56 0.34 9.93 16 38 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 39 H 0.07 1.68 7.81 -51.93 -0.41 1.28 16 40 H 0.06 1.65 7.92 -51.93 -0.41 1.24 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 1.01 7.53 -51.93 -0.39 0.62 16 43 H 0.06 1.02 5.77 -51.93 -0.30 0.72 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.05 0.47 7.21 -51.93 -0.37 0.09 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 380.26 15.07 5.73 5.73 Total: -1.00 -29.07 380.26 -7.85 -36.92 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -6.36 Total: 14.33 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: -2.00 Total: 10.16 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: -0.01 Total: -56.44 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.19 Total: -25.78 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.07 -7.85 -36.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365283864.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.228 kcal (2) G-P(sol) polarization free energy of solvation -29.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds