Wall clock time and date at job start Tue Mar 31 2020 21:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.29939 * 126.28744 * 2 1 4 4 O 1.21301 * 110.24820 * 179.68540 * 3 2 1 5 5 C 1.33635 * 109.81228 * 0.46466 * 4 3 2 6 6 C 1.50706 * 126.55435 * 179.80380 * 5 4 3 7 7 H 1.08997 * 109.47120 * 164.69104 * 6 5 4 8 8 N 1.46501 * 109.46842 * 44.68380 * 6 5 4 9 9 C 1.34779 * 119.99665 * 155.00317 * 8 6 5 10 10 O 1.21588 * 119.99955 * 359.97438 * 9 8 6 11 11 N 1.34777 * 120.00067 * 180.02562 * 9 8 6 12 12 C 1.47430 * 125.64699 * 359.68355 * 11 9 8 13 13 C 1.55120 * 104.72189 * 155.82356 * 12 11 9 14 14 C 1.55157 * 101.48755 * 37.29586 * 13 12 11 15 15 O 1.42903 * 110.71955 * 82.69503 * 14 13 12 16 16 C 1.50702 * 110.87419 * 205.89664 * 14 13 12 17 17 H 1.08002 * 119.99701 * 355.06770 * 16 14 13 18 18 C 1.37876 * 119.99876 * 175.06068 * 16 14 13 19 19 N 1.31516 * 120.00157 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99787 * 180.02562 * 18 16 14 21 21 H 1.48492 * 109.47253 * 60.00111 * 20 18 16 22 22 H 1.48500 * 109.47045 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47154 * 300.00254 * 20 18 16 24 24 C 1.47013 * 125.65162 * 180.02562 * 11 9 8 25 25 C 1.53001 * 109.46967 * 284.68925 * 6 5 4 26 26 C 1.53004 * 109.47135 * 64.99773 * 25 6 5 27 27 C 1.53001 * 109.47113 * 184.99971 * 25 6 5 28 28 N 1.31133 * 106.89680 * 359.54056 * 5 4 3 29 29 H 1.09000 * 109.46863 * 270.03034 * 1 2 3 30 30 H 1.08997 * 109.47108 * 30.02559 * 1 2 3 31 31 H 1.08999 * 109.47275 * 150.02535 * 1 2 3 32 32 H 0.96999 * 120.00226 * 335.01102 * 8 6 5 33 33 H 1.08997 * 110.36592 * 274.75382 * 12 11 9 34 34 H 1.09002 * 110.36580 * 37.07207 * 12 11 9 35 35 H 1.08999 * 111.19426 * 279.19430 * 13 12 11 36 36 H 1.08998 * 110.90737 * 155.27802 * 13 12 11 37 37 H 0.96701 * 113.99692 * 185.02401 * 15 14 13 38 38 H 0.97003 * 119.99981 * 179.97438 * 19 18 16 39 39 H 1.09007 * 109.87874 * 300.43414 * 24 11 9 40 40 H 1.08997 * 109.88592 * 61.44167 * 24 11 9 41 41 H 1.09002 * 109.46941 * 304.99722 * 25 6 5 42 42 H 1.08995 * 109.46837 * 60.00090 * 26 25 6 43 43 H 1.08997 * 109.46953 * 180.02562 * 26 25 6 44 44 H 1.09004 * 109.47025 * 299.99633 * 26 25 6 45 45 H 1.08999 * 109.46898 * 180.02562 * 27 25 6 46 46 H 1.09002 * 109.47014 * 299.99706 * 27 25 6 47 47 H 1.08996 * 109.47139 * 59.99471 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7122 0.0062 5 6 3.5299 -0.6212 0.0008 6 6 4.7969 -1.4371 0.0014 7 1 4.5649 -2.4683 0.2675 8 7 5.7360 -0.8800 0.9781 9 6 6.6827 -1.6666 1.5273 10 8 6.7570 -2.8387 1.2124 11 7 7.5463 -1.1543 2.4263 12 6 7.5726 0.2442 2.8922 13 6 8.2537 0.1831 4.2845 14 6 9.3296 -0.9109 4.0544 15 8 10.4921 -0.3548 3.4366 16 6 9.6902 -1.5903 5.3503 17 1 9.2709 -1.2364 6.2805 18 6 10.5554 -2.6639 5.3484 19 7 11.0663 -3.0946 4.2156 20 14 11.0019 -3.5065 6.9546 21 1 9.7714 -4.0386 7.5932 22 1 11.9419 -4.6235 6.6830 23 1 11.6478 -2.5268 7.8647 24 6 8.6226 -1.8957 3.0995 25 6 5.4283 -1.3997 -1.3918 26 6 5.8676 0.0300 -1.7144 27 6 6.6448 -2.3269 -1.4255 28 7 2.3030 -1.0841 0.0006 29 1 -0.3633 0.0005 1.0277 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3634 -0.8902 -0.5134 32 1 5.6764 0.0549 1.2297 33 1 8.1560 0.8609 2.2085 34 1 6.5582 0.6328 2.9832 35 1 7.5465 -0.1207 5.0562 36 1 8.7152 1.1386 4.5340 37 1 11.1636 -1.0096 3.2013 38 1 11.6753 -3.8497 4.2143 39 1 8.2020 -2.7254 3.6677 40 1 9.3305 -2.2731 2.3616 41 1 4.6984 -1.7309 -2.1305 42 1 6.5974 0.3612 -0.9757 43 1 6.3169 0.0567 -2.7071 44 1 5.0008 0.6906 -1.6904 45 1 7.0948 -2.2999 -2.4179 46 1 7.3747 -1.9957 -0.6869 47 1 6.3319 -3.3454 -1.1957 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365283868.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:55 Heat of formation + Delta-G solvation = -7.688625 kcal Electronic energy + Delta-G solvation = -30859.644257 eV Core-core repulsion = 26660.119730 eV Total energy + Delta-G solvation = -4199.524527 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.87428 -40.17837 -38.07625 -36.55372 -36.27676 -34.34461 -33.15642 -32.76158 -32.23853 -30.03918 -29.48675 -27.99427 -27.22593 -27.14968 -24.90567 -23.92061 -22.78593 -22.00936 -20.41387 -19.61425 -19.49024 -18.39156 -18.17815 -17.39823 -17.10355 -16.23572 -15.71043 -15.26059 -15.17954 -14.66572 -14.36965 -14.18228 -14.16222 -13.93612 -13.59179 -13.23581 -13.20606 -12.93209 -12.86674 -12.63827 -12.30971 -12.15623 -11.98494 -11.90297 -11.70092 -11.49108 -11.34622 -11.33129 -11.05589 -10.99137 -10.85305 -10.83903 -10.70444 -10.51922 -10.20684 -10.17507 -9.71369 -9.34044 -9.07273 -8.68863 -8.34759 -7.85735 -6.29428 -4.37911 0.81720 1.91050 2.44695 2.74636 3.22540 3.28204 3.30091 3.44335 3.58151 3.77193 4.23722 4.30907 4.52368 4.58428 4.83805 4.98167 5.00082 5.03595 5.09662 5.22451 5.31996 5.40205 5.43476 5.57527 5.64603 5.68591 5.69643 5.74576 5.81254 5.96700 5.99170 6.02064 6.03528 6.21169 6.42111 6.47302 6.57412 6.67178 6.84942 6.90050 7.18091 7.27839 7.51035 7.71927 7.87895 8.01603 8.37906 8.65052 8.96087 9.27861 9.36817 10.78284 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018135 B = 0.002872 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.566996 B = 9748.408867 C =10130.667026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.167 3.833 3 N -0.384 5.384 4 O 0.081 5.919 5 C 0.185 3.815 6 C 0.267 3.733 7 H 0.133 0.867 8 N -0.747 5.747 9 C 0.722 3.278 10 O -0.583 6.583 11 N -0.626 5.626 12 C 0.101 3.899 13 C -0.116 4.116 14 C 0.249 3.751 15 O -0.585 6.585 16 C -0.538 4.538 17 H 0.065 0.935 18 C 0.072 3.928 19 N -0.893 5.893 20 Si 0.903 3.097 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.123 3.877 25 C -0.103 4.103 26 C -0.152 4.152 27 C -0.136 4.136 28 N -0.472 5.472 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.398 0.602 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.382 0.618 38 H 0.271 0.729 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.050 0.950 45 H 0.051 0.949 46 H 0.069 0.931 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.874 6.509 -10.512 19.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.105 4.105 3 N -0.093 5.093 4 O 0.023 5.977 5 C -0.036 4.036 6 C 0.158 3.842 7 H 0.151 0.849 8 N -0.406 5.406 9 C 0.424 3.576 10 O -0.462 6.462 11 N -0.363 5.363 12 C -0.023 4.023 13 C -0.154 4.154 14 C 0.208 3.792 15 O -0.393 6.393 16 C -0.576 4.576 17 H 0.084 0.916 18 C -0.132 4.132 19 N -0.532 5.532 20 Si 0.731 3.269 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 C 0.002 3.998 25 C -0.124 4.124 26 C -0.209 4.209 27 C -0.194 4.194 28 N -0.206 5.206 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.233 0.767 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.233 0.767 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.088 0.912 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.694 6.511 -10.760 20.112 hybrid contribution 0.579 -0.586 0.866 1.195 sum -15.115 5.925 -9.894 19.012 Atomic orbital electron populations 1.20151 0.82772 1.04694 1.04437 1.25960 1.00684 0.83384 1.00509 1.74639 0.89385 1.23891 1.21357 1.85308 1.22382 1.24647 1.65339 1.28943 0.96933 0.82149 0.95605 1.19278 0.78735 0.95493 0.90654 0.84921 1.45066 1.34786 1.13777 1.46943 1.15286 0.78955 0.84426 0.78942 1.90925 1.74596 1.14969 1.65661 1.47975 1.33675 1.11852 1.42750 1.22325 0.99213 0.83385 0.97334 1.22757 0.97820 1.00574 0.94222 1.19498 0.82598 0.87476 0.89617 1.86110 1.31057 1.39992 1.82189 1.21442 1.28401 1.14736 0.93071 0.91639 1.25060 0.94988 0.96168 0.96983 1.69681 1.31251 1.26735 1.25489 0.86467 0.78442 0.78907 0.83129 1.20044 1.21075 1.20030 1.22910 0.86410 0.95643 0.94874 1.21628 0.99150 0.97762 0.93874 1.21901 1.01586 0.95055 1.02354 1.21833 0.96674 0.99329 1.01532 1.71904 0.99355 1.29400 1.19914 0.89208 0.89462 0.88927 0.76688 0.91691 0.92679 0.90483 0.90563 0.76744 0.91927 0.91625 0.91658 0.90064 0.91609 0.91961 0.93048 0.93028 0.91212 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.44 10.51 36.01 0.38 -0.06 16 2 C 0.17 1.91 8.22 -156.38 -1.28 0.62 16 3 N -0.38 -4.77 12.16 30.89 0.38 -4.40 16 4 O 0.08 0.98 9.70 18.12 0.18 1.16 16 5 C 0.19 2.25 6.74 -13.05 -0.09 2.16 16 6 C 0.27 3.30 2.50 -69.08 -0.17 3.13 16 7 H 0.13 1.82 7.58 -51.93 -0.39 1.42 16 8 N -0.75 -10.22 4.00 -59.81 -0.24 -10.46 16 9 C 0.72 13.02 7.06 -86.92 -0.61 12.41 16 10 O -0.58 -12.22 13.81 5.29 0.07 -12.15 16 11 N -0.63 -11.98 3.32 -176.11 -0.59 -12.57 16 12 C 0.10 1.65 6.58 -2.41 -0.02 1.64 16 13 C -0.12 -2.20 6.24 -24.47 -0.15 -2.35 16 14 C 0.25 5.76 0.85 -89.94 -0.08 5.69 16 15 O -0.58 -14.11 13.07 -35.23 -0.46 -14.57 16 16 C -0.54 -13.70 8.13 -34.44 -0.28 -13.98 16 17 H 0.07 1.65 7.78 -52.49 -0.41 1.24 16 18 C 0.07 1.83 5.28 -17.82 -0.09 1.73 16 19 N -0.89 -23.22 10.96 55.43 0.61 -22.61 16 20 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 C 0.12 2.85 5.23 -3.07 -0.02 2.83 16 25 C -0.10 -1.14 2.73 -90.62 -0.25 -1.39 16 26 C -0.15 -1.54 8.76 37.16 0.33 -1.21 16 27 C -0.14 -1.78 7.79 37.16 0.29 -1.49 16 28 N -0.47 -5.99 11.55 -9.87 -0.11 -6.10 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.40 4.81 6.92 -40.82 -0.28 4.53 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.05 0.74 7.29 -51.93 -0.38 0.36 16 35 H 0.08 1.43 8.04 -51.93 -0.42 1.01 16 36 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 37 H 0.38 9.48 7.45 45.56 0.34 9.82 16 38 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 39 H 0.07 1.68 7.82 -51.93 -0.41 1.27 16 40 H 0.07 1.65 7.92 -51.93 -0.41 1.24 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.72 7.47 -51.93 -0.39 0.33 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.50 6.33 -51.93 -0.33 0.17 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.07 1.11 5.65 -51.93 -0.29 0.82 16 47 H 0.07 0.92 7.84 -51.93 -0.41 0.51 16 LS Contribution 377.58 15.07 5.69 5.69 Total: -1.00 -28.96 377.58 -7.84 -36.80 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -6.29 Total: 14.34 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: -2.05 Total: 9.73 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: 0.04 Total: -56.13 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.21 Total: -25.56 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.96 -7.84 -36.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365283868.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.109 kcal (2) G-P(sol) polarization free energy of solvation -28.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds