Wall clock time and date at job start Tue Mar 31 2020 21:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29938 * 126.29066 * 2 1 4 4 O 1.21297 * 110.25656 * 179.68601 * 3 2 1 5 5 C 1.33645 * 109.80993 * 0.46191 * 4 3 2 6 6 C 1.50697 * 126.55610 * 179.80576 * 5 4 3 7 7 H 1.09000 * 109.47374 * 194.68700 * 6 5 4 8 8 N 1.46500 * 109.46896 * 314.68781 * 6 5 4 9 9 C 1.34770 * 119.99955 * 204.99514 * 8 6 5 10 10 O 1.21587 * 120.00465 * 0.02562 * 9 8 6 11 11 N 1.34784 * 120.00264 * 180.02562 * 9 8 6 12 12 C 1.47430 * 125.64344 * 0.02562 * 11 9 8 13 13 C 1.54910 * 104.83024 * 204.09365 * 12 11 9 14 14 C 1.55154 * 101.57936 * 322.99270 * 13 12 11 15 15 O 1.42905 * 110.72090 * 277.13482 * 14 13 12 16 16 C 1.50705 * 110.71773 * 154.04633 * 14 13 12 17 17 H 1.07993 * 119.99952 * 359.97438 * 16 14 13 18 18 C 1.37882 * 120.00006 * 180.02562 * 16 14 13 19 19 N 1.31513 * 120.00045 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 120.00073 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47302 * 59.99862 * 20 18 16 22 22 H 1.48499 * 109.47273 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47150 * 299.99881 * 20 18 16 24 24 C 1.47017 * 125.65309 * 179.72016 * 11 9 8 25 25 C 1.53006 * 109.47239 * 74.68563 * 6 5 4 26 26 C 1.52999 * 109.46626 * 60.00034 * 25 6 5 27 27 C 1.52997 * 109.47164 * 180.02562 * 25 6 5 28 28 N 1.31139 * 106.89548 * 359.54276 * 5 4 3 29 29 H 1.09001 * 109.47147 * 270.02811 * 1 2 3 30 30 H 1.08993 * 109.46936 * 30.03011 * 1 2 3 31 31 H 1.09005 * 109.47033 * 150.02982 * 1 2 3 32 32 H 0.96997 * 120.00110 * 25.00292 * 8 6 5 33 33 H 1.08998 * 110.36731 * 322.93388 * 12 11 9 34 34 H 1.09000 * 110.36287 * 85.25929 * 12 11 9 35 35 H 1.08999 * 111.00233 * 81.06495 * 13 12 11 36 36 H 1.08998 * 111.00256 * 204.88292 * 13 12 11 37 37 H 0.96697 * 114.00109 * 179.97438 * 15 14 13 38 38 H 0.96998 * 120.00602 * 180.02562 * 19 18 16 39 39 H 1.08996 * 109.88085 * 298.39532 * 24 11 9 40 40 H 1.09003 * 109.88103 * 59.55998 * 24 11 9 41 41 H 1.09000 * 109.47050 * 300.00336 * 25 6 5 42 42 H 1.09000 * 109.47160 * 60.00369 * 26 25 6 43 43 H 1.09002 * 109.46719 * 180.02562 * 26 25 6 44 44 H 1.08993 * 109.47839 * 299.99931 * 26 25 6 45 45 H 1.09001 * 109.47375 * 59.99966 * 27 25 6 46 46 H 1.09002 * 109.46777 * 180.02562 * 27 25 6 47 47 H 1.09000 * 109.47140 * 299.99948 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0473 0.0000 4 8 3.4418 0.7123 0.0062 5 6 3.5299 -0.6212 0.0008 6 6 4.7969 -1.4371 0.0015 7 1 4.5651 -2.4685 -0.2643 8 7 5.7365 -0.8806 -0.9751 9 6 6.6835 -1.6674 -1.5232 10 8 6.7578 -2.8393 -1.2076 11 7 7.5483 -1.1553 -2.4213 12 6 7.5716 0.2417 -2.8916 13 6 8.2579 0.1816 -4.2791 14 6 9.3334 -0.9125 -4.0474 15 8 10.4953 -0.3563 -3.4286 16 6 9.6948 -1.5881 -5.3452 17 1 9.2156 -1.2840 -6.2640 18 6 10.6363 -2.5953 -5.3592 19 7 11.2194 -2.9660 -4.2402 20 14 11.0837 -3.4333 -6.9676 21 1 11.6213 -2.4265 -7.9176 22 1 12.1131 -4.4732 -6.7144 23 1 9.8729 -4.0661 -7.5496 24 6 8.6285 -1.8958 -3.0894 25 6 5.4274 -1.3989 1.3950 26 6 4.4461 -1.9800 2.4148 27 6 6.7141 -2.2267 1.3955 28 7 2.3029 -1.0842 0.0006 29 1 -0.3633 0.0005 1.0277 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3633 -0.8903 -0.5134 32 1 5.6771 0.0542 -1.2271 33 1 6.5564 0.6269 -2.9869 34 1 8.1513 0.8623 -2.2083 35 1 7.5515 -0.1224 -5.0515 36 1 8.7192 1.1371 -4.5285 37 1 11.1979 -0.9994 -3.2616 38 1 11.8821 -3.6743 -4.2500 39 1 9.3368 -2.2668 -2.3486 40 1 8.2117 -2.7283 -3.6563 41 1 5.6592 -0.3675 1.6607 42 1 4.2143 -3.0114 2.1491 43 1 4.8951 -1.9524 3.4077 44 1 3.5296 -1.3900 2.4144 45 1 7.4131 -1.8123 0.6689 46 1 7.1630 -2.1998 2.3884 47 1 6.4827 -3.2581 1.1296 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365283871.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:59 Heat of formation + Delta-G solvation = -30.834786 kcal Electronic energy + Delta-G solvation = -30676.347411 eV Core-core repulsion = 26475.819191 eV Total energy + Delta-G solvation = -4200.528220 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.77834 -41.56185 -39.55926 -37.90586 -37.14322 -36.08665 -34.48350 -34.14284 -33.82546 -31.64803 -30.18672 -29.63567 -28.53451 -27.94528 -26.58735 -24.79205 -24.24709 -23.03596 -21.53315 -21.24248 -21.07125 -19.47235 -19.29089 -19.03536 -18.42824 -17.55903 -17.12694 -16.91193 -16.63108 -16.10543 -15.86403 -15.52780 -14.99432 -14.74061 -14.70988 -14.54991 -14.50152 -14.36525 -13.83126 -13.72818 -13.55799 -13.45471 -13.29267 -13.21392 -13.01026 -12.82937 -12.80467 -12.51427 -12.42273 -12.31730 -12.28175 -12.21319 -12.07754 -11.99558 -11.85943 -11.28496 -11.17371 -11.06295 -10.61745 -10.35420 -10.27536 -9.45512 -8.25313 -6.40607 -0.12009 1.01658 1.40833 1.44796 1.45136 1.51320 1.53150 2.10627 2.38533 2.51546 2.92835 3.00321 3.01267 3.59696 3.63727 3.81969 3.88517 4.07766 4.14977 4.17341 4.27483 4.39195 4.40942 4.54112 4.57806 4.59584 4.62945 4.74051 4.77684 4.80152 4.87250 4.93157 5.05606 5.06315 5.08008 5.13963 5.15119 5.22788 5.32548 5.39285 5.46609 5.49367 5.77522 5.96859 6.10248 6.65230 6.94005 6.99377 7.31370 7.41684 7.48607 8.80585 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018199 B = 0.002813 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.200560 B = 9950.801266 C =10491.590908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.167 3.833 3 N -0.399 5.399 4 O 0.077 5.923 5 C 0.189 3.811 6 C 0.271 3.729 7 H 0.118 0.882 8 N -0.731 5.731 9 C 0.723 3.277 10 O -0.617 6.617 11 N -0.631 5.631 12 C 0.106 3.894 13 C -0.112 4.112 14 C 0.234 3.766 15 O -0.589 6.589 16 C -0.558 4.558 17 H 0.066 0.934 18 C 0.027 3.973 19 N -0.915 5.915 20 Si 0.962 3.038 21 H -0.269 1.269 22 H -0.284 1.284 23 H -0.274 1.274 24 C 0.141 3.859 25 C -0.096 4.096 26 C -0.139 4.139 27 C -0.128 4.128 28 N -0.483 5.483 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.410 0.590 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.378 0.622 38 H 0.271 0.729 39 H 0.031 0.969 40 H 0.032 0.968 41 H 0.092 0.908 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.047 0.953 45 H 0.034 0.966 46 H 0.070 0.930 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.431 7.164 11.033 21.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.105 4.105 3 N -0.109 5.109 4 O 0.021 5.979 5 C -0.033 4.033 6 C 0.163 3.837 7 H 0.136 0.864 8 N -0.390 5.390 9 C 0.426 3.574 10 O -0.497 6.497 11 N -0.368 5.368 12 C -0.016 4.016 13 C -0.150 4.150 14 C 0.193 3.807 15 O -0.398 6.398 16 C -0.596 4.596 17 H 0.084 0.916 18 C -0.174 4.174 19 N -0.555 5.555 20 Si 0.787 3.213 21 H -0.194 1.194 22 H -0.209 1.209 23 H -0.199 1.199 24 C 0.017 3.983 25 C -0.117 4.117 26 C -0.196 4.196 27 C -0.186 4.186 28 N -0.217 5.217 29 H 0.126 0.874 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.247 0.753 33 H 0.114 0.886 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.229 0.771 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.110 0.890 42 H 0.081 0.919 43 H 0.099 0.901 44 H 0.066 0.934 45 H 0.053 0.947 46 H 0.089 0.911 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.285 7.223 11.328 22.690 hybrid contribution 1.176 -0.985 -0.987 1.825 sum -17.108 6.238 10.341 20.941 Atomic orbital electron populations 1.20396 0.80011 1.05896 1.05847 1.26715 1.02234 0.82592 0.98985 1.74641 0.89418 1.24364 1.22459 1.85275 1.22676 1.24320 1.65619 1.28664 0.96675 0.82256 0.95712 1.19283 0.78799 0.94911 0.90733 0.86423 1.44830 1.33670 1.13909 1.46547 1.15327 0.79233 0.84245 0.78625 1.90901 1.75501 1.16735 1.66591 1.47843 1.32852 1.12832 1.43233 1.22414 1.01555 0.81830 0.95842 1.22721 0.96622 0.99641 0.95980 1.19687 0.83232 0.89121 0.88611 1.86063 1.29175 1.41570 1.83018 1.21816 1.23775 1.19373 0.94619 0.91565 1.25783 0.95323 0.96496 0.99780 1.69659 1.27667 1.30528 1.27609 0.85550 0.77888 0.78095 0.79758 1.19389 1.20928 1.19922 1.22392 0.86640 0.95345 0.93924 1.21591 0.96384 1.02095 0.91635 1.21771 0.97644 1.01197 0.99025 1.21720 0.95794 0.99749 1.01314 1.71951 0.99552 1.30015 1.20220 0.87415 0.88151 0.87969 0.75276 0.88557 0.90747 0.90023 0.89266 0.77075 0.91924 0.95044 0.94905 0.88991 0.91945 0.90092 0.93398 0.94712 0.91120 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.71 10.51 71.23 0.75 0.04 16 2 C 0.17 3.40 8.22 138.46 1.14 4.54 16 3 N -0.40 -9.07 12.16 -60.34 -0.73 -9.80 16 4 O 0.08 1.72 11.14 74.82 0.83 2.56 16 5 C 0.19 4.26 5.99 88.38 0.53 4.79 16 6 C 0.27 6.50 2.39 44.25 0.11 6.60 16 7 H 0.12 3.26 7.58 -2.39 -0.02 3.25 16 8 N -0.73 -19.50 4.92 -461.41 -2.27 -21.77 16 9 C 0.72 26.41 6.84 179.05 1.22 27.64 16 10 O -0.62 -26.77 13.79 -3.99 -0.06 -26.82 16 11 N -0.63 -24.36 3.33 -829.75 -2.76 -27.12 16 12 C 0.11 3.29 6.56 86.85 0.57 3.86 16 13 C -0.11 -4.12 6.23 31.99 0.20 -3.93 16 14 C 0.23 11.06 0.86 -10.35 -0.01 11.05 16 15 O -0.59 -29.31 13.07 -148.98 -1.95 -31.25 16 16 C -0.56 -28.76 8.12 25.60 0.21 -28.56 16 17 H 0.07 3.33 7.76 -2.91 -0.02 3.30 16 18 C 0.03 1.40 5.28 84.66 0.45 1.85 16 19 N -0.91 -48.94 10.97 21.45 0.24 -48.70 16 20 Si 0.96 41.60 29.54 68.60 2.03 43.63 16 21 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 22 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 24 C 0.14 6.76 5.54 86.73 0.48 7.24 16 25 C -0.10 -2.02 2.68 -10.79 -0.03 -2.05 16 26 C -0.14 -2.42 8.95 71.98 0.64 -1.78 16 27 C -0.13 -3.35 7.72 71.98 0.56 -2.80 16 28 N -0.48 -11.20 11.54 -303.21 -3.50 -14.70 16 29 H 0.11 0.82 8.14 -2.39 -0.02 0.81 16 30 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.41 9.07 6.93 -92.71 -0.64 8.43 16 33 H 0.10 2.24 7.30 -2.39 -0.02 2.23 16 34 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.08 2.90 8.03 -2.39 -0.02 2.88 16 36 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 37 H 0.38 19.86 6.98 -74.06 -0.52 19.35 16 38 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 39 H 0.03 1.68 8.07 -2.39 -0.02 1.66 16 40 H 0.03 1.74 7.82 -2.39 -0.02 1.73 16 41 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.05 0.84 7.21 -2.39 -0.02 0.83 16 45 H 0.03 1.11 5.78 -2.39 -0.01 1.09 16 46 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.05 1.52 7.53 -2.39 -0.02 1.50 16 Total: -1.00 -64.29 380.22 -1.50 -65.80 By element: Atomic # 1 Polarization: 39.84 SS G_CDS: -0.15 Total: 39.70 kcal Atomic # 6 Polarization: 21.68 SS G_CDS: 6.81 Total: 28.50 kcal Atomic # 7 Polarization: -113.07 SS G_CDS: -9.03 Total: -122.10 kcal Atomic # 8 Polarization: -54.35 SS G_CDS: -1.17 Total: -55.52 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -64.29 -1.50 -65.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365283871.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.961 kcal (2) G-P(sol) polarization free energy of solvation -64.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds