Wall clock time and date at job start Tue Mar 31 2020 21:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29946 * 126.28699 * 2 1 4 4 O 1.21305 * 110.25058 * 179.68625 * 3 2 1 5 5 C 1.33644 * 109.80798 * 0.47079 * 4 3 2 6 6 C 1.50705 * 126.54663 * 179.80012 * 5 4 3 7 7 H 1.08999 * 109.98890 * 163.60570 * 6 5 4 8 8 O 1.43741 * 109.87963 * 42.51977 * 6 5 4 9 9 C 1.44380 * 106.97768 * 214.05873 * 8 6 5 10 10 C 1.55001 * 103.48347 * 40.06193 * 9 8 6 11 11 C 1.54095 * 109.87920 * 284.68475 * 6 5 4 12 12 H 1.09000 * 110.60573 * 240.18988 * 11 6 5 13 13 N 1.46911 * 110.48859 * 2.78256 * 11 6 5 14 14 C 1.46893 * 110.99716 * 201.21532 * 13 11 6 15 15 C 1.53006 * 109.46921 * 180.02562 * 14 13 11 16 16 C 1.50699 * 109.47032 * 180.02562 * 15 14 13 17 17 O 1.21280 * 120.00439 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99530 * 180.02562 * 16 15 14 19 19 C 1.46499 * 120.00151 * 359.97438 * 18 16 15 20 20 C 1.46497 * 119.99526 * 179.97438 * 18 16 15 21 21 C 1.50700 * 109.47128 * 269.99537 * 20 18 16 22 22 H 1.07999 * 119.99988 * 0.02562 * 21 20 18 23 23 C 1.37885 * 120.00047 * 180.02562 * 21 20 18 24 24 N 1.31516 * 119.99913 * 180.02562 * 23 21 20 25 25 Si 1.86805 * 119.99854 * 359.72512 * 23 21 20 26 26 H 1.48498 * 109.46909 * 90.00086 * 25 23 21 27 27 H 1.48497 * 109.46701 * 209.99996 * 25 23 21 28 28 H 1.48500 * 109.46867 * 330.00101 * 25 23 21 29 29 N 1.31127 * 106.89942 * 359.53642 * 5 4 3 30 30 H 1.09004 * 109.47021 * 270.02445 * 1 2 3 31 31 H 1.08997 * 109.47187 * 30.01706 * 1 2 3 32 32 H 1.08999 * 109.47093 * 150.02429 * 1 2 3 33 33 H 1.08998 * 110.61804 * 281.56746 * 9 8 6 34 34 H 1.08991 * 110.61815 * 158.56099 * 9 8 6 35 35 H 1.09003 * 110.90196 * 204.77535 * 10 9 8 36 36 H 1.08997 * 110.93736 * 81.19224 * 10 9 8 37 37 H 1.00902 * 110.99831 * 77.26312 * 13 11 6 38 38 H 1.08999 * 109.47004 * 60.00227 * 14 13 11 39 39 H 1.08999 * 109.47822 * 300.00045 * 14 13 11 40 40 H 1.08999 * 109.47098 * 60.00282 * 15 14 13 41 41 H 1.09007 * 109.46803 * 300.00238 * 15 14 13 42 42 H 1.09003 * 109.47071 * 269.99963 * 19 18 16 43 43 H 1.08996 * 109.47090 * 30.00493 * 19 18 16 44 44 H 1.08996 * 109.46935 * 150.00279 * 19 18 16 45 45 H 1.09004 * 109.47268 * 149.99677 * 20 18 16 46 46 H 1.08997 * 109.47471 * 30.00084 * 20 18 16 47 47 H 0.97001 * 119.99646 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7124 0.0062 5 6 3.5298 -0.6212 0.0006 6 6 4.7970 -1.4370 0.0011 7 1 4.5774 -2.4662 0.2849 8 8 5.7444 -0.8679 0.9202 9 6 7.0572 -1.0813 0.3585 10 6 6.8507 -0.8144 -1.1543 11 6 5.4409 -1.4055 -1.3986 12 1 5.5152 -2.4124 -1.8093 13 7 4.6694 -0.5394 -2.3002 14 6 4.9371 -0.8715 -3.7058 15 6 4.1182 0.0498 -4.6123 16 6 4.3923 -0.2912 -6.0544 17 8 5.1668 -1.1829 -6.3301 18 7 3.7776 0.3955 -7.0378 19 6 2.8425 1.4730 -6.7048 20 6 4.0445 0.0643 -8.4397 21 6 5.2064 0.8850 -8.9372 22 1 5.6972 1.5831 -8.2753 23 6 5.6429 0.7446 -10.2376 24 7 6.6572 1.4605 -10.6717 25 14 4.7989 -0.4684 -11.3803 26 1 3.6859 0.2121 -12.0898 27 1 5.7794 -0.9787 -12.3719 28 1 4.2604 -1.6028 -10.5875 29 7 2.3030 -1.0841 0.0004 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3633 -0.8902 -0.5135 33 1 7.3842 -2.1075 0.5261 34 1 7.7737 -0.3755 0.7785 35 1 7.6003 -1.3384 -1.7475 36 1 6.8667 0.2545 -1.3670 37 1 4.8591 0.4344 -2.1162 38 1 4.6582 -1.9083 -3.8937 39 1 5.9983 -0.7370 -3.9153 40 1 4.3975 1.0865 -4.4244 41 1 3.0569 -0.0843 -4.4030 42 1 1.8364 1.0645 -6.6101 43 1 3.1386 1.9324 -5.7618 44 1 2.8570 2.2236 -7.4950 45 1 3.1613 0.2840 -9.0395 46 1 4.2859 -0.9953 -8.5231 47 1 6.9640 1.3619 -11.5866 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413028589.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:35 Heat of formation + Delta-G solvation = 1.741757 kcal Electronic energy + Delta-G solvation = -29770.402598 eV Core-core repulsion = 25571.287002 eV Total energy + Delta-G solvation = -4199.115595 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.61611 -40.33232 -39.16007 -36.27642 -36.12420 -34.93952 -33.44057 -32.66569 -32.07867 -30.28181 -29.35042 -28.85482 -27.80138 -25.90175 -24.21203 -23.62155 -23.29642 -22.14516 -21.62630 -20.90106 -18.48451 -18.19585 -17.79462 -17.15435 -16.99653 -16.70857 -16.36367 -15.83545 -15.57854 -15.33629 -14.72072 -14.46462 -14.30725 -14.12008 -13.90313 -13.78483 -13.56111 -13.08242 -12.95616 -12.89578 -12.46749 -12.38709 -12.34915 -12.09914 -11.94819 -11.89254 -11.84949 -11.58670 -11.45194 -11.32698 -11.16860 -11.11699 -10.91218 -10.53544 -10.46201 -10.12875 -9.92658 -9.57825 -9.07147 -8.79883 -8.62152 -7.73952 -6.11675 -4.10581 1.07157 2.12117 2.58397 3.09861 3.24860 3.29592 3.32665 3.37607 3.43555 3.70640 3.92284 3.95890 4.15970 4.32568 4.37307 4.60172 4.60799 4.68224 4.93003 4.99857 5.03812 5.14306 5.15052 5.18411 5.22969 5.26144 5.28968 5.34956 5.39223 5.50665 5.52911 5.72626 5.74367 5.81170 5.90013 5.92790 5.96258 6.14566 6.17551 6.61291 6.63413 6.93528 6.97736 7.29724 7.58159 8.10911 8.20656 8.43847 8.88707 8.94321 9.48593 11.01731 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015015 B = 0.002564 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.303741 B =10919.547290 C =12139.205646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.169 3.831 3 N -0.387 5.387 4 O 0.087 5.913 5 C 0.222 3.778 6 C 0.175 3.825 7 H 0.122 0.878 8 O -0.364 6.364 9 C 0.050 3.950 10 C -0.188 4.188 11 C 0.065 3.935 12 H 0.113 0.887 13 N -0.686 5.686 14 C 0.078 3.922 15 C -0.136 4.136 16 C 0.509 3.491 17 O -0.544 6.544 18 N -0.598 5.598 19 C 0.083 3.917 20 C 0.215 3.785 21 C -0.529 4.529 22 H 0.073 0.927 23 C 0.072 3.928 24 N -0.898 5.898 25 Si 0.876 3.124 26 H -0.275 1.275 27 H -0.283 1.283 28 H -0.264 1.264 29 N -0.477 5.477 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.346 0.654 38 H 0.083 0.917 39 H 0.047 0.953 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.045 0.955 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.025 0.975 46 H 0.041 0.959 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.734 -4.465 24.760 26.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.104 4.104 3 N -0.095 5.095 4 O 0.029 5.971 5 C 0.001 3.999 6 C 0.114 3.886 7 H 0.139 0.861 8 O -0.282 6.282 9 C -0.027 4.027 10 C -0.227 4.227 11 C -0.047 4.047 12 H 0.131 0.869 13 N -0.317 5.317 14 C -0.051 4.051 15 C -0.177 4.177 16 C 0.295 3.705 17 O -0.422 6.422 18 N -0.329 5.329 19 C -0.061 4.061 20 C 0.094 3.906 21 C -0.568 4.568 22 H 0.091 0.909 23 C -0.131 4.131 24 N -0.536 5.536 25 Si 0.702 3.298 26 H -0.201 1.201 27 H -0.209 1.209 28 H -0.188 1.188 29 N -0.213 5.213 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.165 0.835 38 H 0.102 0.898 39 H 0.066 0.934 40 H 0.105 0.895 41 H 0.110 0.890 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.043 0.957 46 H 0.059 0.941 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.478 -4.663 24.646 26.174 hybrid contribution 0.720 -0.078 -1.122 1.336 sum -6.758 -4.741 23.524 24.930 Atomic orbital electron populations 1.20107 0.83207 1.04682 1.03977 1.25767 1.00359 0.83495 1.00780 1.74605 0.89453 1.23962 1.21523 1.85263 1.22138 1.24505 1.65221 1.27834 0.95712 0.82072 0.94313 1.21247 0.82252 0.94355 0.90700 0.86096 1.88987 1.15818 1.80232 1.43171 1.23615 0.84734 1.02113 0.92192 1.23955 0.98131 1.03128 0.97471 1.23042 0.90282 0.99838 0.91567 0.86866 1.60519 1.58425 1.08289 1.04502 1.21686 0.98580 1.00251 0.84532 1.21586 1.02381 1.00954 0.92781 1.20223 0.80876 0.82515 0.86851 1.90664 1.35458 1.31839 1.84228 1.47834 1.43161 1.34009 1.07935 1.21671 0.92034 0.90863 1.01524 1.19667 0.96495 0.97805 0.76604 1.21325 1.14696 1.23296 0.97440 0.90850 1.24868 0.94771 0.95522 0.97895 1.69898 1.25938 1.40669 1.17122 0.86849 0.79646 0.82268 0.81003 1.20070 1.20912 1.18826 1.71762 0.99263 1.29497 1.20743 0.89622 0.89560 0.89103 0.90981 0.87921 0.88759 0.89566 0.83473 0.89831 0.93424 0.89504 0.88983 0.93622 0.92130 0.90562 0.95685 0.94096 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.51 36.01 0.38 -0.09 16 2 C 0.17 1.97 8.22 -156.37 -1.28 0.68 16 3 N -0.39 -4.97 12.16 30.90 0.38 -4.60 16 4 O 0.09 1.07 10.76 17.98 0.19 1.26 16 5 C 0.22 2.49 6.08 -13.06 -0.08 2.41 16 6 C 0.18 1.50 3.99 -27.31 -0.11 1.39 16 7 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 8 O -0.36 -3.18 11.17 -35.35 -0.39 -3.58 16 9 C 0.05 0.29 7.72 38.21 0.29 0.58 16 10 C -0.19 -1.23 6.76 -24.72 -0.17 -1.40 16 11 C 0.06 0.52 3.32 -66.18 -0.22 0.30 16 12 H 0.11 0.82 7.87 -51.93 -0.41 0.41 16 13 N -0.69 -6.94 4.73 -105.11 -0.50 -7.44 16 14 C 0.08 0.98 4.82 -3.82 -0.02 0.96 16 15 C -0.14 -1.91 4.51 -27.88 -0.13 -2.04 16 16 C 0.51 10.10 7.67 -10.98 -0.08 10.01 16 17 O -0.54 -12.97 15.56 5.56 0.09 -12.89 16 18 N -0.60 -12.26 2.86 -182.96 -0.52 -12.78 16 19 C 0.08 1.28 10.24 59.85 0.61 1.89 16 20 C 0.21 5.27 4.23 -5.20 -0.02 5.25 16 21 C -0.53 -15.22 9.94 -34.44 -0.34 -15.57 16 22 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 23 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 24 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 25 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 26 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 29 N -0.48 -5.83 11.55 -9.86 -0.11 -5.94 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.62 7.63 -51.93 -0.40 0.22 16 37 H 0.35 3.47 7.67 -39.29 -0.30 3.17 16 38 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 39 H 0.05 0.64 8.08 -51.93 -0.42 0.22 16 40 H 0.09 1.11 7.40 -51.93 -0.38 0.73 16 41 H 0.09 1.19 8.11 -51.93 -0.42 0.77 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 44 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 45 H 0.03 0.58 7.51 -51.93 -0.39 0.19 16 46 H 0.04 1.08 6.47 -51.93 -0.34 0.75 16 47 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 389.23 15.07 5.87 5.87 Total: -1.00 -36.28 389.23 -7.37 -43.65 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -7.20 Total: 0.12 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -1.26 Total: 6.38 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.02 Total: -57.67 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.11 Total: -15.20 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.28 -7.37 -43.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413028589.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.392 kcal (2) G-P(sol) polarization free energy of solvation -36.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds