Wall clock time and date at job start Tue Mar 31 2020 21:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29946 * 126.28699 * 2 1 4 4 O 1.21305 * 110.25058 * 179.68625 * 3 2 1 5 5 C 1.33644 * 109.80798 * 0.47079 * 4 3 2 6 6 C 1.50705 * 126.54663 * 179.80012 * 5 4 3 7 7 H 1.08999 * 109.98890 * 163.60570 * 6 5 4 8 8 O 1.43741 * 109.87963 * 42.51977 * 6 5 4 9 9 C 1.44380 * 106.97768 * 214.05873 * 8 6 5 10 10 C 1.55001 * 103.48347 * 40.06193 * 9 8 6 11 11 C 1.54095 * 109.87920 * 284.68475 * 6 5 4 12 12 H 1.09000 * 110.60573 * 240.18988 * 11 6 5 13 13 N 1.46911 * 110.48859 * 2.78256 * 11 6 5 14 14 C 1.46893 * 110.99716 * 201.21532 * 13 11 6 15 15 C 1.53006 * 109.46921 * 180.02562 * 14 13 11 16 16 C 1.50699 * 109.47032 * 180.02562 * 15 14 13 17 17 O 1.21280 * 120.00439 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99530 * 180.02562 * 16 15 14 19 19 C 1.46499 * 120.00151 * 359.97438 * 18 16 15 20 20 C 1.46497 * 119.99526 * 179.97438 * 18 16 15 21 21 C 1.50700 * 109.47128 * 269.99537 * 20 18 16 22 22 H 1.07999 * 119.99988 * 0.02562 * 21 20 18 23 23 C 1.37885 * 120.00047 * 180.02562 * 21 20 18 24 24 N 1.31516 * 119.99913 * 180.02562 * 23 21 20 25 25 Si 1.86805 * 119.99854 * 359.72512 * 23 21 20 26 26 H 1.48498 * 109.46909 * 90.00086 * 25 23 21 27 27 H 1.48497 * 109.46701 * 209.99996 * 25 23 21 28 28 H 1.48500 * 109.46867 * 330.00101 * 25 23 21 29 29 N 1.31127 * 106.89942 * 359.53642 * 5 4 3 30 30 H 1.09004 * 109.47021 * 270.02445 * 1 2 3 31 31 H 1.08997 * 109.47187 * 30.01706 * 1 2 3 32 32 H 1.08999 * 109.47093 * 150.02429 * 1 2 3 33 33 H 1.08998 * 110.61804 * 281.56746 * 9 8 6 34 34 H 1.08991 * 110.61815 * 158.56099 * 9 8 6 35 35 H 1.09003 * 110.90196 * 204.77535 * 10 9 8 36 36 H 1.08997 * 110.93736 * 81.19224 * 10 9 8 37 37 H 1.00902 * 110.99831 * 77.26312 * 13 11 6 38 38 H 1.08999 * 109.47004 * 60.00227 * 14 13 11 39 39 H 1.08999 * 109.47822 * 300.00045 * 14 13 11 40 40 H 1.08999 * 109.47098 * 60.00282 * 15 14 13 41 41 H 1.09007 * 109.46803 * 300.00238 * 15 14 13 42 42 H 1.09003 * 109.47071 * 269.99963 * 19 18 16 43 43 H 1.08996 * 109.47090 * 30.00493 * 19 18 16 44 44 H 1.08996 * 109.46935 * 150.00279 * 19 18 16 45 45 H 1.09004 * 109.47268 * 149.99677 * 20 18 16 46 46 H 1.08997 * 109.47471 * 30.00084 * 20 18 16 47 47 H 0.97001 * 119.99646 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7124 0.0062 5 6 3.5298 -0.6212 0.0006 6 6 4.7970 -1.4370 0.0011 7 1 4.5774 -2.4662 0.2849 8 8 5.7444 -0.8679 0.9202 9 6 7.0572 -1.0813 0.3585 10 6 6.8507 -0.8144 -1.1543 11 6 5.4409 -1.4055 -1.3986 12 1 5.5152 -2.4124 -1.8093 13 7 4.6694 -0.5394 -2.3002 14 6 4.9371 -0.8715 -3.7058 15 6 4.1182 0.0498 -4.6123 16 6 4.3923 -0.2912 -6.0544 17 8 5.1668 -1.1829 -6.3301 18 7 3.7776 0.3955 -7.0378 19 6 2.8425 1.4730 -6.7048 20 6 4.0445 0.0643 -8.4397 21 6 5.2064 0.8850 -8.9372 22 1 5.6972 1.5831 -8.2753 23 6 5.6429 0.7446 -10.2376 24 7 6.6572 1.4605 -10.6717 25 14 4.7989 -0.4684 -11.3803 26 1 3.6859 0.2121 -12.0898 27 1 5.7794 -0.9787 -12.3719 28 1 4.2604 -1.6028 -10.5875 29 7 2.3030 -1.0841 0.0004 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3633 -0.8902 -0.5135 33 1 7.3842 -2.1075 0.5261 34 1 7.7737 -0.3755 0.7785 35 1 7.6003 -1.3384 -1.7475 36 1 6.8667 0.2545 -1.3670 37 1 4.8591 0.4344 -2.1162 38 1 4.6582 -1.9083 -3.8937 39 1 5.9983 -0.7370 -3.9153 40 1 4.3975 1.0865 -4.4244 41 1 3.0569 -0.0843 -4.4030 42 1 1.8364 1.0645 -6.6101 43 1 3.1386 1.9324 -5.7618 44 1 2.8570 2.2236 -7.4950 45 1 3.1613 0.2840 -9.0395 46 1 4.2859 -0.9953 -8.5231 47 1 6.9640 1.3619 -11.5866 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413028589.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:34 Heat of formation + Delta-G solvation = -27.188613 kcal Electronic energy + Delta-G solvation = -29771.657113 eV Core-core repulsion = 25571.287002 eV Total energy + Delta-G solvation = -4200.370110 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.47188 -41.04301 -40.64232 -37.20456 -36.96518 -36.57159 -34.74347 -34.23197 -33.09042 -31.15601 -30.48179 -29.85564 -28.98653 -27.35518 -25.19701 -24.84717 -24.09699 -23.16888 -22.77562 -21.64893 -19.97534 -19.17358 -19.07065 -18.60723 -18.08582 -17.58272 -17.46294 -17.08025 -16.84649 -16.35665 -16.15704 -15.61247 -15.29174 -15.02155 -14.74038 -14.65534 -14.58230 -14.37092 -14.07578 -13.99453 -13.69067 -13.65944 -13.50918 -13.35001 -13.17703 -12.97715 -12.83083 -12.63145 -12.54426 -12.45159 -12.23186 -12.12459 -12.06200 -12.01210 -11.92491 -11.77871 -11.05770 -10.84208 -10.75338 -10.70432 -9.62331 -9.42536 -8.36260 -6.41652 0.22912 1.29266 1.30999 1.35382 1.46267 1.75889 1.82824 2.22167 2.29815 2.40355 2.85084 2.98137 3.04681 3.23204 3.52151 3.65809 3.75860 3.93990 3.97132 4.07202 4.12482 4.15335 4.31318 4.34664 4.52727 4.57258 4.60112 4.62305 4.63136 4.72311 4.76878 4.80593 4.83719 4.87856 4.92629 4.94415 4.97481 5.01289 5.02682 5.17036 5.43537 5.58044 5.61317 5.75902 6.14193 6.20958 6.59361 6.66073 7.18960 7.25844 7.37902 8.80764 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015015 B = 0.002564 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.303741 B =10919.547290 C =12139.205646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.163 3.837 3 N -0.410 5.410 4 O 0.074 5.926 5 C 0.223 3.777 6 C 0.178 3.822 7 H 0.139 0.861 8 O -0.381 6.381 9 C 0.050 3.950 10 C -0.183 4.183 11 C 0.064 3.936 12 H 0.123 0.877 13 N -0.685 5.685 14 C 0.091 3.909 15 C -0.120 4.120 16 C 0.499 3.501 17 O -0.593 6.593 18 N -0.609 5.609 19 C 0.078 3.922 20 C 0.223 3.777 21 C -0.538 4.538 22 H 0.028 0.972 23 C 0.011 3.989 24 N -0.946 5.946 25 Si 0.949 3.051 26 H -0.251 1.251 27 H -0.281 1.281 28 H -0.255 1.255 29 N -0.496 5.496 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.347 0.653 38 H 0.074 0.926 39 H 0.033 0.967 40 H 0.103 0.897 41 H 0.112 0.888 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.066 0.934 45 H 0.047 0.953 46 H 0.021 0.979 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.498 -5.380 25.691 27.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.109 4.109 3 N -0.121 5.121 4 O 0.019 5.981 5 C 0.001 3.999 6 C 0.118 3.882 7 H 0.156 0.844 8 O -0.299 6.299 9 C -0.025 4.025 10 C -0.222 4.222 11 C -0.048 4.048 12 H 0.141 0.859 13 N -0.316 5.316 14 C -0.039 4.039 15 C -0.160 4.160 16 C 0.288 3.712 17 O -0.475 6.475 18 N -0.340 5.340 19 C -0.064 4.064 20 C 0.100 3.900 21 C -0.576 4.576 22 H 0.046 0.954 23 C -0.187 4.187 24 N -0.586 5.586 25 Si 0.772 3.228 26 H -0.175 1.175 27 H -0.207 1.207 28 H -0.179 1.179 29 N -0.232 5.232 30 H 0.120 0.880 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.111 0.889 34 H 0.132 0.868 35 H 0.120 0.880 36 H 0.097 0.903 37 H 0.166 0.834 38 H 0.092 0.908 39 H 0.052 0.948 40 H 0.121 0.879 41 H 0.131 0.869 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.084 0.916 45 H 0.065 0.935 46 H 0.039 0.961 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.256 -5.547 25.618 27.798 hybrid contribution 1.326 0.264 -1.320 1.890 sum -7.929 -5.283 24.298 26.100 Atomic orbital electron populations 1.20302 0.80822 1.05550 1.05298 1.26479 1.01848 0.83072 0.99517 1.74594 0.89761 1.24779 1.23009 1.85230 1.22156 1.25053 1.65691 1.28397 0.96455 0.81879 0.93129 1.21418 0.81404 0.94550 0.90859 0.84410 1.88976 1.16921 1.80520 1.43505 1.23805 0.83730 1.03749 0.91258 1.23907 0.97347 1.02635 0.98359 1.23139 0.90767 0.99999 0.90898 0.85898 1.60467 1.59098 1.08702 1.03315 1.21450 0.97388 0.99325 0.85695 1.21508 1.03809 1.02018 0.88674 1.21232 0.79633 0.81487 0.88891 1.90630 1.37526 1.34007 1.85305 1.47974 1.44088 1.35340 1.06551 1.21950 0.92573 0.89521 1.02389 1.19332 0.95484 0.95666 0.79497 1.21555 1.15954 1.22972 0.97129 0.95397 1.25872 0.95460 0.97541 0.99863 1.70051 1.27855 1.42715 1.17934 0.85689 0.79018 0.79667 0.78458 1.17545 1.20670 1.17949 1.71784 0.99762 1.29966 1.21682 0.88004 0.88644 0.88202 0.88911 0.86813 0.88018 0.90317 0.83365 0.90782 0.94848 0.87867 0.86942 0.90368 0.89501 0.91553 0.93461 0.96101 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.83 10.51 71.24 0.75 -0.08 16 2 C 0.16 3.61 8.22 138.46 1.14 4.75 16 3 N -0.41 -10.19 12.16 -60.31 -0.73 -10.93 16 4 O 0.07 1.77 10.76 74.94 0.81 2.57 16 5 C 0.22 4.76 6.08 88.38 0.54 5.29 16 6 C 0.18 2.77 3.99 30.22 0.12 2.89 16 7 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 8 O -0.38 -6.07 11.17 -148.86 -1.66 -7.73 16 9 C 0.05 0.48 7.72 72.67 0.56 1.04 16 10 C -0.18 -2.15 6.76 31.90 0.22 -1.94 16 11 C 0.06 0.93 3.32 45.90 0.15 1.08 16 12 H 0.12 1.57 7.87 -2.39 -0.02 1.56 16 13 N -0.68 -12.99 4.73 -486.46 -2.30 -15.30 16 14 C 0.09 2.19 4.82 86.31 0.42 2.61 16 15 C -0.12 -3.18 4.51 29.85 0.13 -3.05 16 16 C 0.50 19.67 7.67 87.66 0.67 20.34 16 17 O -0.59 -28.91 15.56 -3.03 -0.05 -28.96 16 18 N -0.61 -24.57 2.86 -851.14 -2.43 -27.00 16 19 C 0.08 2.23 10.24 127.77 1.31 3.54 16 20 C 0.22 10.89 4.23 85.63 0.36 11.25 16 21 C -0.54 -31.74 9.94 25.60 0.25 -31.49 16 22 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 23 C 0.01 0.63 5.47 84.66 0.46 1.09 16 24 N -0.95 -59.78 13.96 21.45 0.30 -59.48 16 25 Si 0.95 44.35 27.47 68.60 1.88 46.23 16 26 H -0.25 -10.75 7.11 99.48 0.71 -10.04 16 27 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 28 H -0.26 -11.52 6.54 99.48 0.65 -10.87 16 29 N -0.50 -11.51 11.55 -303.18 -3.50 -15.02 16 30 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 1.06 7.63 -2.39 -0.02 1.04 16 37 H 0.35 6.56 7.67 -89.69 -0.69 5.88 16 38 H 0.07 1.95 8.04 -2.39 -0.02 1.93 16 39 H 0.03 0.90 8.08 -2.39 -0.02 0.88 16 40 H 0.10 2.43 7.40 -2.39 -0.02 2.41 16 41 H 0.11 2.58 8.11 -2.38 -0.02 2.56 16 42 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.09 2.01 6.44 -2.39 -0.02 2.00 16 44 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 45 H 0.05 2.10 7.51 -2.38 -0.02 2.08 16 46 H 0.02 1.11 6.47 -2.39 -0.02 1.09 16 47 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -81.82 389.23 -0.36 -82.18 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.25 Total: 16.09 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: 7.08 Total: 17.33 kcal Atomic # 7 Polarization: -119.05 SS G_CDS: -8.67 Total: -127.72 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -0.90 Total: -34.12 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.88 Total: 46.23 kcal Total: -81.82 -0.36 -82.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413028589.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.993 kcal (2) G-P(sol) polarization free energy of solvation -81.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds