Wall clock time and date at job start Tue Mar 31 2020 22:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 N 1.33693 * 126.27135 * 90.02550 * 3 2 1 5 5 C 1.30611 * 108.99480 * 179.97438 * 4 3 2 6 6 O 1.33668 * 109.15469 * 359.97438 * 5 4 3 7 7 C 1.35338 * 107.68524 * 359.76134 * 6 5 4 8 8 C 1.46715 * 126.64591 * 180.25506 * 7 6 5 9 9 O 1.21693 * 120.00116 * 180.14970 * 8 7 6 10 10 N 1.34779 * 120.00052 * 0.15177 * 8 7 6 11 11 C 1.46501 * 119.99853 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46656 * 179.97438 * 11 10 8 13 13 C 1.53009 * 109.47002 * 179.97438 * 12 11 10 14 14 N 1.46898 * 109.47101 * 179.97438 * 13 12 11 15 15 C 1.46899 * 110.99961 * 66.04428 * 14 13 12 16 16 C 1.46900 * 111.00071 * 189.99954 * 14 13 12 17 17 C 1.50696 * 109.47297 * 170.00184 * 16 14 13 18 18 O 1.21296 * 120.00094 * 359.97438 * 17 16 14 19 19 N 1.34783 * 119.99862 * 180.02562 * 17 16 14 20 20 C 1.37092 * 119.99482 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00460 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99852 * 179.97438 * 20 19 17 23 23 N 1.31409 * 120.00425 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99542 * 0.02562 * 22 20 19 25 25 H 1.48505 * 109.46973 * 89.99968 * 24 22 20 26 26 H 1.48504 * 109.46887 * 209.99510 * 24 22 20 27 27 H 1.48491 * 109.47378 * 329.99393 * 24 22 20 28 28 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 29 29 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 31 31 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 32 32 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 33 33 H 1.08002 * 125.42310 * 180.02562 * 5 4 3 34 34 H 0.96996 * 119.99810 * 359.97438 * 10 8 7 35 35 H 1.09005 * 109.47145 * 299.99222 * 11 10 8 36 36 H 1.08996 * 109.47822 * 59.99842 * 11 10 8 37 37 H 1.08999 * 109.47167 * 299.99327 * 12 11 10 38 38 H 1.08998 * 109.47323 * 59.99929 * 12 11 10 39 39 H 1.08999 * 109.46764 * 299.99762 * 13 12 11 40 40 H 1.08998 * 109.46985 * 59.99911 * 13 12 11 41 41 H 1.09007 * 109.47087 * 60.00020 * 15 14 13 42 42 H 1.09000 * 109.47230 * 179.97438 * 15 14 13 43 43 H 1.08995 * 109.47354 * 299.99788 * 15 14 13 44 44 H 1.09003 * 109.46703 * 290.00417 * 16 14 13 45 45 H 1.08997 * 109.46853 * 49.99749 * 16 14 13 46 46 H 0.96991 * 120.00035 * 359.97438 * 19 17 16 47 47 H 0.96999 * 120.00190 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2965 2.1664 1.0779 5 6 2.7126 3.3421 0.6900 6 8 2.7275 3.3833 -0.6460 7 6 2.3073 2.1793 -1.0992 8 6 2.1707 1.7705 -2.5016 9 8 1.7766 0.6517 -2.7737 10 7 2.4817 2.6340 -3.4886 11 6 2.3447 2.2259 -4.8889 12 6 2.7587 3.3832 -5.8001 13 6 2.6162 2.9569 -7.2627 14 7 3.0131 4.0683 -8.1375 15 6 4.4453 4.3631 -7.9972 16 6 2.6684 3.7854 -9.5372 17 6 2.8607 5.0309 -10.3635 18 8 3.2464 6.0538 -9.8380 19 7 2.6030 5.0085 -11.6863 20 6 2.7775 6.1417 -12.4378 21 1 3.1209 7.0525 -11.9699 22 6 2.5123 6.1185 -13.8016 23 7 2.6790 7.2048 -14.5220 24 14 1.9176 4.5433 -14.6107 25 1 0.4337 4.4976 -14.5736 26 1 2.3788 4.5071 -16.0219 27 1 2.4674 3.3734 -13.8801 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.9997 4.1518 1.3445 34 1 2.7955 3.5258 -3.2717 35 1 2.9852 1.3650 -5.0808 36 1 1.3072 1.9590 -5.0899 37 1 2.1179 4.2439 -5.6082 38 1 3.7961 3.6506 -5.5993 39 1 3.2573 2.0964 -7.4543 40 1 1.5789 2.6893 -7.4637 41 1 5.0260 3.4810 -8.2675 42 1 4.7125 5.1893 -8.6561 43 1 4.6604 4.6373 -6.9645 44 1 3.3141 2.9938 -9.9175 45 1 1.6280 3.4662 -9.5978 46 1 2.2942 4.1906 -12.1064 47 1 2.4936 7.1887 -15.4739 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479795731.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:32 Heat of formation + Delta-G solvation = -42.182789 kcal Electronic energy + Delta-G solvation = -27983.470262 eV Core-core repulsion = 23782.449955 eV Total energy + Delta-G solvation = -4201.020307 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.94138 -39.97913 -38.85885 -37.15378 -36.29924 -35.29600 -33.93227 -33.39998 -31.97533 -31.66568 -30.07617 -28.09009 -26.77861 -25.18308 -24.45250 -23.98154 -22.78228 -21.70547 -21.26497 -20.62178 -19.36626 -18.64540 -18.22527 -17.38479 -16.97030 -16.67696 -16.18051 -15.94043 -15.36389 -15.30973 -15.04438 -14.91278 -14.62147 -14.31910 -14.26109 -13.82244 -13.73735 -13.51267 -13.12487 -13.11135 -12.49676 -12.42634 -12.23797 -11.95098 -11.86628 -11.81654 -11.59248 -11.47107 -11.42220 -11.36169 -11.32905 -11.03907 -10.84949 -10.60825 -10.52503 -9.98831 -9.69966 -9.55145 -9.33053 -8.60093 -8.19341 -7.99606 -6.32234 -3.83635 0.33252 1.93815 1.95826 2.62815 2.71238 3.01460 3.05997 3.14246 3.52635 3.72304 3.87417 4.09250 4.18294 4.25953 4.68292 4.70641 4.80947 4.88011 4.91114 4.94286 5.00594 5.04965 5.20146 5.25963 5.27028 5.37142 5.45791 5.52707 5.57771 5.61434 5.64010 5.75649 5.78447 5.81720 5.85293 5.90473 5.92386 5.95624 6.02679 6.47056 6.84546 7.10637 7.12229 7.26521 7.57289 7.58165 8.13437 8.59186 8.94190 9.41410 9.82402 10.80853 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.028702 B = 0.001556 C = 0.001503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.299780 B =17992.515842 C =18630.465125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.054 4.054 3 C 0.085 3.915 4 N -0.492 5.492 5 C 0.204 3.796 6 O -0.191 6.191 7 C -0.116 4.116 8 C 0.608 3.392 9 O -0.511 6.511 10 N -0.716 5.716 11 C 0.120 3.880 12 C -0.129 4.129 13 C 0.058 3.942 14 N -0.519 5.519 15 C 0.019 3.981 16 C 0.043 3.957 17 C 0.453 3.547 18 O -0.560 6.560 19 N -0.591 5.591 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.881 5.881 24 Si 0.879 3.121 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.258 0.742 34 H 0.407 0.593 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.034 0.966 40 H 0.077 0.923 41 H 0.015 0.985 42 H 0.096 0.904 43 H 0.062 0.938 44 H 0.049 0.951 45 H 0.090 0.910 46 H 0.370 0.630 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.968 -14.103 28.039 31.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.091 4.091 3 C -0.039 4.039 4 N -0.221 5.221 5 C -0.021 4.021 6 O -0.077 6.077 7 C -0.171 4.171 8 C 0.393 3.607 9 O -0.389 6.389 10 N -0.366 5.366 11 C -0.003 4.003 12 C -0.167 4.167 13 C -0.070 4.070 14 N -0.243 5.243 15 C -0.129 4.129 16 C -0.089 4.089 17 C 0.238 3.762 18 O -0.441 6.441 19 N -0.231 5.231 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.195 1.195 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.100 0.900 33 H 0.273 0.727 34 H 0.242 0.758 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.053 0.947 40 H 0.095 0.905 41 H 0.033 0.967 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.067 0.933 45 H 0.108 0.892 46 H 0.203 0.797 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.299 -13.790 28.669 31.840 hybrid contribution 0.294 -0.968 -1.502 1.811 sum -1.005 -14.759 27.166 30.933 Atomic orbital electron populations 1.21640 0.93632 1.02452 1.02047 1.20194 0.96788 0.87644 1.04506 1.22108 0.97192 0.98257 0.86307 1.70367 1.17024 1.03307 1.31421 1.28397 0.96783 0.97561 0.79338 1.84499 1.64854 1.33788 1.24563 1.22913 1.12585 0.85351 0.96293 1.16288 0.78178 0.84870 0.81344 1.90881 1.46677 1.19453 1.81855 1.45909 1.67104 1.17128 1.06495 1.21450 1.02472 0.97987 0.78431 1.21792 1.02954 0.97956 0.94020 1.21998 1.01130 0.92072 0.91843 1.61531 1.18776 1.38597 1.05367 1.22599 0.86299 1.01212 1.02793 1.21898 1.01685 0.96600 0.88669 1.19640 0.84343 0.89822 0.82372 1.90524 1.49472 1.33207 1.70934 1.42214 1.61090 1.12386 1.07380 1.19424 1.42813 0.90869 0.90249 0.86276 1.25036 0.97736 0.97293 0.96077 1.69618 1.47941 1.27166 1.07410 0.86676 0.79735 0.82959 0.80032 1.19588 1.20197 1.19544 0.92359 0.91529 0.92671 0.88119 0.89966 0.72669 0.75810 0.90941 0.90685 0.89948 0.90914 0.94747 0.90481 0.96673 0.88547 0.91938 0.93312 0.89208 0.79721 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.89 37.16 0.37 -0.70 16 2 C -0.05 -0.45 5.93 -27.88 -0.17 -0.61 16 3 C 0.09 0.81 6.41 -82.46 -0.53 0.28 16 4 N -0.49 -4.32 11.26 -10.88 -0.12 -4.44 16 5 C 0.20 1.17 13.21 52.24 0.69 1.86 16 6 O -0.19 -1.42 10.57 4.43 0.05 -1.38 16 7 C -0.12 -1.08 7.18 -36.84 -0.26 -1.35 16 8 C 0.61 6.10 7.79 -12.84 -0.10 6.00 16 9 O -0.51 -6.23 14.79 5.19 0.08 -6.15 16 10 N -0.72 -5.84 5.55 -61.60 -0.34 -6.18 16 11 C 0.12 0.98 5.67 -4.04 -0.02 0.96 16 12 C -0.13 -1.14 5.25 -26.73 -0.14 -1.28 16 13 C 0.06 0.63 4.96 -3.82 -0.02 0.61 16 14 N -0.52 -7.81 4.50 -244.37 -1.10 -8.91 16 15 C 0.02 0.28 8.96 60.06 0.54 0.82 16 16 C 0.04 0.70 5.45 -4.98 -0.03 0.67 16 17 C 0.45 10.07 7.47 -10.98 -0.08 9.99 16 18 O -0.56 -14.61 13.91 5.54 0.08 -14.53 16 19 N -0.59 -13.89 5.09 -10.96 -0.06 -13.95 16 20 C -0.30 -8.53 10.16 -14.93 -0.15 -8.69 16 21 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.57 13.96 55.50 0.77 -24.80 16 24 Si 0.88 19.19 27.74 -169.99 -4.71 14.48 16 25 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.10 0.92 6.45 -51.93 -0.33 0.58 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.26 0.07 8.06 -52.49 -0.42 -0.35 16 34 H 0.41 2.67 8.27 -40.82 -0.34 2.34 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.63 6.55 -51.93 -0.34 0.29 16 39 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 40 H 0.08 0.77 7.93 -51.93 -0.41 0.35 16 41 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.10 1.80 5.82 -51.93 -0.30 1.50 16 43 H 0.06 0.79 6.47 -51.93 -0.34 0.45 16 44 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 45 H 0.09 1.26 7.93 -51.93 -0.41 0.85 16 46 H 0.37 7.63 5.76 -40.82 -0.24 7.40 16 47 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 392.26 15.07 5.91 5.91 Total: -1.00 -35.23 392.26 -6.36 -41.60 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -6.91 Total: 8.77 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 0.00 Total: 9.59 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: -0.85 Total: -58.28 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: 0.20 Total: -22.06 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.71 Total: 14.48 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.23 -6.36 -41.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479795731.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.585 kcal (2) G-P(sol) polarization free energy of solvation -35.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds