Wall clock time and date at job start Tue Mar 31 2020 22:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 N 1.33693 * 126.27135 * 90.02550 * 3 2 1 5 5 C 1.30611 * 108.99480 * 179.97438 * 4 3 2 6 6 O 1.33668 * 109.15469 * 359.97438 * 5 4 3 7 7 C 1.35338 * 107.68524 * 359.76134 * 6 5 4 8 8 C 1.46715 * 126.64591 * 180.25506 * 7 6 5 9 9 O 1.21693 * 120.00116 * 180.14970 * 8 7 6 10 10 N 1.34779 * 120.00052 * 0.15177 * 8 7 6 11 11 C 1.46501 * 119.99853 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46656 * 179.97438 * 11 10 8 13 13 C 1.53009 * 109.47002 * 179.97438 * 12 11 10 14 14 N 1.46898 * 109.47101 * 179.97438 * 13 12 11 15 15 C 1.46899 * 110.99961 * 66.04428 * 14 13 12 16 16 C 1.46900 * 111.00071 * 189.99954 * 14 13 12 17 17 C 1.50696 * 109.47297 * 170.00184 * 16 14 13 18 18 O 1.21296 * 120.00094 * 359.97438 * 17 16 14 19 19 N 1.34783 * 119.99862 * 180.02562 * 17 16 14 20 20 C 1.37092 * 119.99482 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00460 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99852 * 179.97438 * 20 19 17 23 23 N 1.31409 * 120.00425 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99542 * 0.02562 * 22 20 19 25 25 H 1.48505 * 109.46973 * 89.99968 * 24 22 20 26 26 H 1.48504 * 109.46887 * 209.99510 * 24 22 20 27 27 H 1.48491 * 109.47378 * 329.99393 * 24 22 20 28 28 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 29 29 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 31 31 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 32 32 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 33 33 H 1.08002 * 125.42310 * 180.02562 * 5 4 3 34 34 H 0.96996 * 119.99810 * 359.97438 * 10 8 7 35 35 H 1.09005 * 109.47145 * 299.99222 * 11 10 8 36 36 H 1.08996 * 109.47822 * 59.99842 * 11 10 8 37 37 H 1.08999 * 109.47167 * 299.99327 * 12 11 10 38 38 H 1.08998 * 109.47323 * 59.99929 * 12 11 10 39 39 H 1.08999 * 109.46764 * 299.99762 * 13 12 11 40 40 H 1.08998 * 109.46985 * 59.99911 * 13 12 11 41 41 H 1.09007 * 109.47087 * 60.00020 * 15 14 13 42 42 H 1.09000 * 109.47230 * 179.97438 * 15 14 13 43 43 H 1.08995 * 109.47354 * 299.99788 * 15 14 13 44 44 H 1.09003 * 109.46703 * 290.00417 * 16 14 13 45 45 H 1.08997 * 109.46853 * 49.99749 * 16 14 13 46 46 H 0.96991 * 120.00035 * 359.97438 * 19 17 16 47 47 H 0.96999 * 120.00190 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2965 2.1664 1.0779 5 6 2.7126 3.3421 0.6900 6 8 2.7275 3.3833 -0.6460 7 6 2.3073 2.1793 -1.0992 8 6 2.1707 1.7705 -2.5016 9 8 1.7766 0.6517 -2.7737 10 7 2.4817 2.6340 -3.4886 11 6 2.3447 2.2259 -4.8889 12 6 2.7587 3.3832 -5.8001 13 6 2.6162 2.9569 -7.2627 14 7 3.0131 4.0683 -8.1375 15 6 4.4453 4.3631 -7.9972 16 6 2.6684 3.7854 -9.5372 17 6 2.8607 5.0309 -10.3635 18 8 3.2464 6.0538 -9.8380 19 7 2.6030 5.0085 -11.6863 20 6 2.7775 6.1417 -12.4378 21 1 3.1209 7.0525 -11.9699 22 6 2.5123 6.1185 -13.8016 23 7 2.6790 7.2048 -14.5220 24 14 1.9176 4.5433 -14.6107 25 1 0.4337 4.4976 -14.5736 26 1 2.3788 4.5071 -16.0219 27 1 2.4674 3.3734 -13.8801 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.9997 4.1518 1.3445 34 1 2.7955 3.5258 -3.2717 35 1 2.9852 1.3650 -5.0808 36 1 1.3072 1.9590 -5.0899 37 1 2.1179 4.2439 -5.6082 38 1 3.7961 3.6506 -5.5993 39 1 3.2573 2.0964 -7.4543 40 1 1.5789 2.6893 -7.4637 41 1 5.0260 3.4810 -8.2675 42 1 4.7125 5.1893 -8.6561 43 1 4.6604 4.6373 -6.9645 44 1 3.3141 2.9938 -9.9175 45 1 1.6280 3.4662 -9.5978 46 1 2.2942 4.1906 -12.1064 47 1 2.4936 7.1887 -15.4739 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479795731.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:31 Heat of formation + Delta-G solvation = -73.142694 kcal Electronic energy + Delta-G solvation = -27984.812784 eV Core-core repulsion = 23782.449955 eV Total energy + Delta-G solvation = -4202.362829 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.50697 -40.73308 -40.46010 -38.33515 -36.97806 -36.18781 -35.79749 -34.00813 -33.74234 -32.79504 -30.74513 -29.46249 -27.70996 -26.59789 -25.45583 -24.62286 -23.75959 -22.35839 -22.08309 -21.37179 -21.23121 -20.15625 -19.26166 -17.97821 -17.85802 -17.49151 -17.19981 -16.92653 -16.80020 -16.45225 -16.07404 -15.89560 -15.56940 -15.51166 -15.10264 -14.90004 -14.80082 -14.72572 -14.41625 -14.26929 -13.74060 -13.70507 -13.38492 -13.07840 -12.85574 -12.72716 -12.53948 -12.50205 -12.40696 -12.32810 -12.20232 -12.10038 -11.97029 -11.96309 -11.65062 -11.45720 -11.25174 -10.39868 -10.34536 -10.21673 -9.94682 -9.18355 -8.40022 -6.00522 -0.27424 1.30949 1.36535 1.37661 1.38601 1.45112 1.92493 1.98284 2.07890 2.23969 2.67448 3.09123 3.16025 3.28148 3.59539 3.66430 3.95745 4.01840 4.12559 4.20570 4.27909 4.30377 4.38056 4.40473 4.45086 4.46044 4.54157 4.61408 4.63423 4.74050 4.76499 4.81386 4.97749 5.03968 5.09550 5.18282 5.18631 5.22433 5.31175 5.35559 5.54614 5.91693 6.03322 6.20395 6.24374 6.53152 6.61742 6.89874 6.90519 7.42132 7.99851 8.77619 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.028702 B = 0.001556 C = 0.001503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.299780 B =17992.515842 C =18630.465125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.054 4.054 3 C 0.076 3.924 4 N -0.524 5.524 5 C 0.228 3.772 6 O -0.192 6.192 7 C -0.137 4.137 8 C 0.606 3.394 9 O -0.540 6.540 10 N -0.708 5.708 11 C 0.127 3.873 12 C -0.118 4.118 13 C 0.059 3.941 14 N -0.542 5.542 15 C 0.023 3.977 16 C 0.054 3.946 17 C 0.451 3.549 18 O -0.605 6.605 19 N -0.593 5.593 20 C -0.327 4.327 21 H 0.055 0.945 22 C -0.015 4.015 23 N -0.935 5.935 24 Si 0.964 3.036 25 H -0.257 1.257 26 H -0.276 1.276 27 H -0.231 1.231 28 H 0.043 0.957 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.307 0.693 34 H 0.415 0.585 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.051 0.949 40 H 0.090 0.910 41 H 0.032 0.968 42 H 0.050 0.950 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.121 0.879 46 H 0.389 0.611 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.588 -16.965 29.216 33.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.092 4.092 3 C -0.047 4.047 4 N -0.253 5.253 5 C 0.003 3.997 6 O -0.078 6.078 7 C -0.192 4.192 8 C 0.392 3.608 9 O -0.420 6.420 10 N -0.358 5.358 11 C 0.004 3.996 12 C -0.156 4.156 13 C -0.069 4.069 14 N -0.266 5.266 15 C -0.124 4.124 16 C -0.077 4.077 17 C 0.238 3.762 18 O -0.489 6.489 19 N -0.235 5.235 20 C -0.456 4.456 21 H 0.073 0.927 22 C -0.214 4.214 23 N -0.576 5.576 24 Si 0.784 3.216 25 H -0.182 1.182 26 H -0.201 1.201 27 H -0.155 1.155 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.322 0.678 34 H 0.251 0.749 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.108 0.892 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.139 0.861 46 H 0.224 0.776 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.913 -16.661 29.878 34.263 hybrid contribution 0.558 0.090 -1.687 1.780 sum -1.355 -16.571 28.190 32.728 Atomic orbital electron populations 1.21588 0.93181 1.03120 1.01270 1.20198 0.97151 0.87502 1.04336 1.22322 0.96947 0.98702 0.86772 1.70386 1.18812 1.04601 1.31501 1.29583 0.93482 0.97613 0.78990 1.84506 1.64935 1.32984 1.25424 1.22739 1.14252 0.86195 0.96003 1.16391 0.77844 0.84656 0.81888 1.90857 1.48124 1.20577 1.82404 1.45846 1.66446 1.17262 1.06280 1.21356 1.02411 0.97655 0.78190 1.21654 1.02999 0.97781 0.93147 1.22084 1.02114 0.91057 0.91600 1.61468 1.18737 1.41176 1.05240 1.22463 0.86875 1.00230 1.02872 1.21838 1.04227 0.93232 0.88439 1.20944 0.81650 0.91375 0.82184 1.90515 1.50693 1.35870 1.71860 1.42049 1.62010 1.11700 1.07788 1.18997 1.44468 0.90793 0.91360 0.92673 1.26103 0.97094 1.02105 0.96089 1.69804 1.49241 1.30498 1.08075 0.85372 0.79636 0.78051 0.78504 1.18174 1.20146 1.15454 0.93818 0.90179 0.92589 0.89174 0.89130 0.67810 0.74878 0.90767 0.90818 0.90661 0.90599 0.93085 0.89198 0.94945 0.93161 0.90043 0.90482 0.86107 0.77551 0.91212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 9.89 71.98 0.71 -1.29 16 2 C -0.05 -0.89 5.93 29.85 0.18 -0.72 16 3 C 0.08 1.40 6.41 41.84 0.27 1.67 16 4 N -0.52 -8.43 11.26 -303.12 -3.41 -11.84 16 5 C 0.23 2.03 13.21 130.42 1.72 3.76 16 6 O -0.19 -2.52 10.57 -7.06 -0.07 -2.60 16 7 C -0.14 -2.45 7.18 24.04 0.17 -2.28 16 8 C 0.61 11.79 7.79 86.46 0.67 12.46 16 9 O -0.54 -13.07 14.79 -4.33 -0.06 -13.14 16 10 N -0.71 -10.58 5.55 -467.03 -2.59 -13.18 16 11 C 0.13 1.82 5.67 86.38 0.49 2.31 16 12 C -0.12 -1.78 5.25 30.60 0.16 -1.62 16 13 C 0.06 1.07 4.96 86.31 0.43 1.50 16 14 N -0.54 -15.08 4.50 -927.05 -4.17 -19.25 16 15 C 0.02 0.67 8.96 127.69 1.14 1.81 16 16 C 0.05 1.59 5.45 85.56 0.47 2.05 16 17 C 0.45 20.01 7.47 87.65 0.66 20.67 16 18 O -0.61 -32.92 13.91 -3.08 -0.04 -32.97 16 19 N -0.59 -27.70 5.09 -306.98 -1.56 -29.26 16 20 C -0.33 -19.06 10.16 84.04 0.85 -18.21 16 21 H 0.06 3.83 7.39 -2.91 -0.02 3.81 16 22 C -0.02 -0.85 5.50 84.93 0.47 -0.39 16 23 N -0.94 -56.32 13.96 21.66 0.30 -56.01 16 24 Si 0.96 38.53 27.74 68.60 1.90 40.44 16 25 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 26 H -0.28 -11.00 7.11 99.48 0.71 -10.30 16 27 H -0.23 -7.73 6.52 99.48 0.65 -7.08 16 28 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.09 1.67 6.45 -2.39 -0.02 1.66 16 32 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.31 -1.08 8.06 -2.91 -0.02 -1.10 16 34 H 0.41 4.82 8.27 -92.71 -0.77 4.05 16 35 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.08 1.12 6.55 -2.39 -0.02 1.10 16 39 H 0.05 0.80 8.12 -2.39 -0.02 0.78 16 40 H 0.09 1.43 7.93 -2.39 -0.02 1.41 16 41 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 42 H 0.05 1.91 5.82 -2.39 -0.01 1.90 16 43 H 0.08 1.94 6.47 -2.39 -0.02 1.93 16 44 H 0.08 1.90 8.12 -2.39 -0.02 1.88 16 45 H 0.12 2.88 7.93 -2.39 -0.02 2.86 16 46 H 0.39 14.97 5.76 -92.72 -0.53 14.44 16 47 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -83.67 392.26 -1.67 -85.34 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: -0.35 Total: 30.74 kcal Atomic # 6 Polarization: 13.33 SS G_CDS: 8.39 Total: 21.72 kcal Atomic # 7 Polarization: -118.11 SS G_CDS: -11.44 Total: -129.55 kcal Atomic # 8 Polarization: -48.52 SS G_CDS: -0.18 Total: -48.70 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 1.90 Total: 40.44 kcal Total: -83.67 -1.67 -85.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479795731.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.201 kcal (2) G-P(sol) polarization free energy of solvation -83.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds