Wall clock time and date at job start Tue Mar 31 2020 22:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50700 * 109.46595 * 2 1 4 4 O 1.34254 * 126.52545 * 270.18032 * 3 2 1 5 5 C 1.34049 * 108.22781 * 180.26650 * 4 3 2 6 6 N 1.29934 * 109.24015 * 359.74146 * 5 4 3 7 7 C 1.36065 * 108.48237 * 359.97438 * 6 5 4 8 8 C 1.47417 * 126.45061 * 179.97438 * 7 6 5 9 9 O 1.21613 * 119.99925 * 180.02562 * 8 7 6 10 10 N 1.34777 * 120.00113 * 0.03186 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27547 * 10 8 7 12 12 C 1.52996 * 109.47059 * 179.72339 * 11 10 8 13 13 C 1.53003 * 109.47301 * 179.97438 * 12 11 10 14 14 H 1.08992 * 109.47039 * 305.00167 * 13 12 11 15 15 C 1.53001 * 109.46949 * 184.99469 * 13 12 11 16 16 N 1.46905 * 109.46855 * 64.99825 * 13 12 11 17 17 C 1.46902 * 110.99867 * 204.99939 * 16 13 12 18 18 C 1.50699 * 109.46946 * 180.02562 * 17 16 13 19 19 O 1.21291 * 120.00278 * 0.02562 * 18 17 16 20 20 N 1.34774 * 119.99612 * 180.02562 * 18 17 16 21 21 C 1.37104 * 119.99949 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99491 * 0.02562 * 21 20 18 23 23 C 1.38945 * 119.99733 * 180.02562 * 21 20 18 24 24 N 1.31405 * 120.00618 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99576 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47357 * 90.00098 * 25 23 21 27 27 H 1.48498 * 109.47326 * 209.99986 * 25 23 21 28 28 H 1.48498 * 109.47331 * 329.99850 * 25 23 21 29 29 H 1.08995 * 109.46933 * 299.99978 * 1 2 3 30 30 H 1.08992 * 109.47217 * 60.00079 * 1 2 3 31 31 H 1.08999 * 109.46782 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46933 * 240.00022 * 2 1 3 33 33 H 1.09000 * 109.47126 * 119.99554 * 2 1 3 34 34 H 1.07997 * 125.38099 * 179.76653 * 5 4 3 35 35 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 36 36 H 1.09004 * 109.46963 * 299.72135 * 11 10 8 37 37 H 1.08994 * 109.47567 * 59.72287 * 11 10 8 38 38 H 1.09004 * 109.47066 * 299.99732 * 12 11 10 39 39 H 1.09000 * 109.47665 * 59.99541 * 12 11 10 40 40 H 1.09008 * 109.46576 * 179.97438 * 15 13 12 41 41 H 1.08992 * 109.47820 * 300.00220 * 15 13 12 42 42 H 1.09003 * 109.46585 * 60.00658 * 15 13 12 43 43 H 1.00896 * 110.99847 * 81.04941 * 16 13 12 44 44 H 1.09001 * 109.47009 * 300.00318 * 17 16 13 45 45 H 1.09003 * 109.47030 * 59.99969 * 17 16 13 46 46 H 0.97008 * 120.00392 * 0.02562 * 20 18 17 47 47 H 0.97003 * 120.00398 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2954 2.1754 -1.0788 5 6 2.7263 3.3729 -0.6580 6 7 2.7355 3.3923 0.6411 7 6 2.3019 2.1847 1.0937 8 6 2.1584 1.7776 2.5032 9 8 1.7580 0.6622 2.7763 10 7 2.4708 2.6416 3.4893 11 6 2.3340 2.2349 4.8901 12 6 2.7568 3.3899 5.8001 13 6 2.6133 2.9654 7.2630 14 1 1.5952 2.6206 7.4431 15 6 2.9162 4.1582 8.1721 16 7 3.5571 1.8774 7.5520 17 6 3.0875 1.0583 8.6774 18 6 4.0794 -0.0445 8.9442 19 8 5.0792 -0.1386 8.2641 20 7 3.8553 -0.9263 9.9385 21 6 4.7573 -1.9299 10.1809 22 1 5.6476 -2.0136 9.5753 23 6 4.5260 -2.8393 11.2057 24 7 3.4425 -2.7377 11.9423 25 14 5.7554 -4.2063 11.5365 26 1 6.7664 -3.7362 12.5174 27 1 5.0449 -5.3887 12.0861 28 1 6.4322 -4.5807 10.2689 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.0192 4.1923 -1.2977 35 1 2.7904 3.5311 3.2715 36 1 1.2952 1.9741 5.0929 37 1 2.9696 1.3704 5.0812 38 1 3.7956 3.6507 5.5973 39 1 2.1212 4.2545 5.6090 40 1 2.8135 3.8559 9.2144 41 1 3.9344 4.5030 7.9921 42 1 2.2159 4.9655 7.9577 43 1 4.4823 2.2388 7.7291 44 1 2.9911 1.6825 9.5658 45 1 2.1184 0.6242 8.4314 46 1 3.0554 -0.8513 10.4822 47 1 3.2812 -3.3724 12.6579 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480755010.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:12 Heat of formation + Delta-G solvation = -64.011927 kcal Electronic energy + Delta-G solvation = -28400.949214 eV Core-core repulsion = 24198.982325 eV Total energy + Delta-G solvation = -4201.966889 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.77028 -39.58114 -38.43250 -37.07508 -35.24343 -34.90081 -34.25893 -33.84419 -31.55594 -31.06525 -29.76933 -28.71450 -26.29488 -25.16130 -24.06998 -23.84265 -22.89113 -21.56058 -20.98673 -20.34430 -19.22146 -18.39062 -17.84292 -17.16320 -16.44985 -16.09286 -15.99875 -15.66072 -15.28299 -15.16796 -14.82702 -14.68026 -14.51627 -13.95429 -13.92048 -13.72612 -13.64307 -13.31965 -13.02907 -12.91317 -12.69567 -12.13713 -12.05917 -11.90286 -11.70142 -11.56865 -11.53349 -11.47019 -11.29526 -11.17617 -11.05522 -11.00396 -10.83475 -10.36330 -10.18336 -10.14865 -9.47154 -9.32562 -8.98843 -8.42091 -7.99848 -7.91450 -6.38016 -3.78592 0.81838 1.75208 2.21874 3.03491 3.18105 3.20621 3.29018 3.35505 3.72226 3.95528 4.12879 4.25926 4.36498 4.54312 4.74220 4.75434 4.89141 4.97150 5.02877 5.15609 5.20823 5.22382 5.30243 5.35253 5.44333 5.46231 5.56219 5.59735 5.70883 5.73051 5.80787 5.82800 5.87318 5.89541 6.02775 6.12386 6.14020 6.28079 6.33178 6.42290 7.05957 7.26732 7.47924 7.58861 7.70850 8.10374 8.10586 8.65474 9.21909 9.58656 10.10308 10.79809 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012737 B = 0.002047 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.769116 B =13674.195161 C =15113.258510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.049 4.049 3 C 0.047 3.953 4 O -0.200 6.200 5 C 0.171 3.829 6 N -0.464 5.464 7 C -0.075 4.075 8 C 0.598 3.402 9 O -0.528 6.528 10 N -0.712 5.712 11 C 0.122 3.878 12 C -0.115 4.115 13 C 0.085 3.915 14 H 0.080 0.920 15 C -0.183 4.183 16 N -0.663 5.663 17 C 0.050 3.950 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.269 1.269 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.120 0.880 34 H 0.254 0.746 35 H 0.405 0.595 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.350 0.650 44 H 0.043 0.957 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.308 15.392 -21.926 27.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 C -0.009 4.009 4 O -0.086 6.086 5 C -0.057 4.057 6 N -0.193 5.193 7 C -0.195 4.195 8 C 0.383 3.617 9 O -0.405 6.405 10 N -0.363 5.363 11 C 0.000 4.000 12 C -0.154 4.154 13 C -0.026 4.026 14 H 0.098 0.902 15 C -0.242 4.242 16 N -0.295 5.295 17 C -0.082 4.082 18 C 0.227 3.773 19 O -0.467 6.467 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.205 1.205 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.138 0.862 34 H 0.270 0.730 35 H 0.240 0.760 36 H 0.083 0.917 37 H 0.110 0.890 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.170 0.830 44 H 0.061 0.939 45 H 0.104 0.896 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.062 14.474 -22.107 27.351 hybrid contribution 0.308 0.183 0.771 0.850 sum -6.754 14.656 -21.336 26.752 Atomic orbital electron populations 1.21701 0.92973 1.03093 1.02336 1.20435 0.97182 0.85286 1.05689 1.23872 0.98246 0.95514 0.83282 1.84379 1.63586 1.24266 1.36367 1.27989 0.99259 0.87222 0.91237 1.70718 1.17108 1.21298 1.10197 1.21561 1.10644 0.91522 0.95782 1.16679 0.77947 0.84591 0.82490 1.90826 1.46664 1.19921 1.83106 1.45840 1.66734 1.17207 1.06482 1.21454 1.02090 0.98903 0.77582 1.21749 1.02224 0.97103 0.94312 1.21502 0.97467 0.90230 0.93407 0.90180 1.22512 1.02081 0.99104 1.00466 1.60208 1.05375 1.22040 1.41880 1.21701 0.99014 0.95063 0.92442 1.19833 0.88524 0.85286 0.83678 1.90525 1.30188 1.75656 1.50318 1.41870 1.22841 1.26044 1.29411 1.19698 1.03362 1.04871 1.14807 0.87959 1.25254 0.97440 0.99124 0.96194 1.69610 1.25947 1.38047 1.20798 0.85861 0.79796 0.79893 0.78764 1.20477 1.20939 1.19405 0.91740 0.92721 0.90877 0.89669 0.86206 0.72996 0.76025 0.91744 0.89023 0.91053 0.91446 0.92343 0.92293 0.92221 0.83021 0.93882 0.89595 0.77482 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.90 37.16 0.37 -0.79 16 2 C -0.05 -0.44 5.93 -27.88 -0.17 -0.60 16 3 C 0.05 0.49 6.69 -35.08 -0.23 0.26 16 4 O -0.20 -1.73 10.73 6.52 0.07 -1.66 16 5 C 0.17 1.20 13.19 51.96 0.69 1.89 16 6 N -0.46 -4.73 11.06 -11.49 -0.13 -4.86 16 7 C -0.08 -0.90 6.99 -83.02 -0.58 -1.48 16 8 C 0.60 8.23 7.81 -12.52 -0.10 8.13 16 9 O -0.53 -8.62 14.81 5.27 0.08 -8.54 16 10 N -0.71 -8.53 5.55 -61.39 -0.34 -8.87 16 11 C 0.12 1.54 5.56 -4.04 -0.02 1.52 16 12 C -0.12 -1.18 5.00 -26.73 -0.13 -1.31 16 13 C 0.09 0.98 2.59 -67.71 -0.18 0.81 16 14 H 0.08 0.91 7.80 -51.93 -0.40 0.50 16 15 C -0.18 -1.82 9.16 37.16 0.34 -1.48 16 16 N -0.66 -10.38 5.33 -107.99 -0.58 -10.95 16 17 C 0.05 0.89 5.97 -4.98 -0.03 0.86 16 18 C 0.44 10.55 7.82 -10.99 -0.09 10.46 16 19 O -0.58 -16.05 15.78 5.55 0.09 -15.96 16 20 N -0.56 -14.54 5.29 -10.96 -0.06 -14.60 16 21 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 22 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.88 13.05 55.50 0.72 -24.16 16 25 Si 0.93 21.41 29.55 -169.99 -5.02 16.38 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.12 1.29 6.49 -51.93 -0.34 0.95 16 34 H 0.25 0.39 8.06 -52.49 -0.42 -0.04 16 35 H 0.41 4.11 8.20 -40.82 -0.33 3.78 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.09 1.47 7.75 -51.93 -0.40 1.07 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.62 7.45 -51.92 -0.39 0.24 16 41 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.35 5.72 8.17 -39.29 -0.32 5.40 16 44 H 0.04 0.68 7.44 -51.93 -0.39 0.29 16 45 H 0.09 1.42 8.06 -51.93 -0.42 1.00 16 46 H 0.39 9.64 7.90 -40.82 -0.32 9.31 16 47 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 400.29 15.07 6.03 6.03 Total: -1.00 -34.81 400.29 -6.56 -41.36 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: -7.05 Total: 15.67 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: -0.37 Total: 10.16 kcal Atomic # 7 Polarization: -63.07 SS G_CDS: -0.38 Total: -63.45 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: 0.24 Total: -26.16 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.81 -6.56 -41.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480755010.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.650 kcal (2) G-P(sol) polarization free energy of solvation -34.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds