Wall clock time and date at job start Tue Mar 31 2020 22:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50700 * 109.46595 * 2 1 4 4 O 1.34254 * 126.52545 * 270.18032 * 3 2 1 5 5 C 1.34049 * 108.22781 * 180.26650 * 4 3 2 6 6 N 1.29934 * 109.24015 * 359.74146 * 5 4 3 7 7 C 1.36065 * 108.48237 * 359.97438 * 6 5 4 8 8 C 1.47417 * 126.45061 * 179.97438 * 7 6 5 9 9 O 1.21613 * 119.99925 * 180.02562 * 8 7 6 10 10 N 1.34777 * 120.00113 * 0.03186 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27547 * 10 8 7 12 12 C 1.52996 * 109.47059 * 179.72339 * 11 10 8 13 13 C 1.53003 * 109.47301 * 179.97438 * 12 11 10 14 14 H 1.08992 * 109.47039 * 305.00167 * 13 12 11 15 15 C 1.53001 * 109.46949 * 184.99469 * 13 12 11 16 16 N 1.46905 * 109.46855 * 64.99825 * 13 12 11 17 17 C 1.46902 * 110.99867 * 204.99939 * 16 13 12 18 18 C 1.50699 * 109.46946 * 180.02562 * 17 16 13 19 19 O 1.21291 * 120.00278 * 0.02562 * 18 17 16 20 20 N 1.34774 * 119.99612 * 180.02562 * 18 17 16 21 21 C 1.37104 * 119.99949 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99491 * 0.02562 * 21 20 18 23 23 C 1.38945 * 119.99733 * 180.02562 * 21 20 18 24 24 N 1.31405 * 120.00618 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99576 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47357 * 90.00098 * 25 23 21 27 27 H 1.48498 * 109.47326 * 209.99986 * 25 23 21 28 28 H 1.48498 * 109.47331 * 329.99850 * 25 23 21 29 29 H 1.08995 * 109.46933 * 299.99978 * 1 2 3 30 30 H 1.08992 * 109.47217 * 60.00079 * 1 2 3 31 31 H 1.08999 * 109.46782 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46933 * 240.00022 * 2 1 3 33 33 H 1.09000 * 109.47126 * 119.99554 * 2 1 3 34 34 H 1.07997 * 125.38099 * 179.76653 * 5 4 3 35 35 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 36 36 H 1.09004 * 109.46963 * 299.72135 * 11 10 8 37 37 H 1.08994 * 109.47567 * 59.72287 * 11 10 8 38 38 H 1.09004 * 109.47066 * 299.99732 * 12 11 10 39 39 H 1.09000 * 109.47665 * 59.99541 * 12 11 10 40 40 H 1.09008 * 109.46576 * 179.97438 * 15 13 12 41 41 H 1.08992 * 109.47820 * 300.00220 * 15 13 12 42 42 H 1.09003 * 109.46585 * 60.00658 * 15 13 12 43 43 H 1.00896 * 110.99847 * 81.04941 * 16 13 12 44 44 H 1.09001 * 109.47009 * 300.00318 * 17 16 13 45 45 H 1.09003 * 109.47030 * 59.99969 * 17 16 13 46 46 H 0.97008 * 120.00392 * 0.02562 * 20 18 17 47 47 H 0.97003 * 120.00398 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2954 2.1754 -1.0788 5 6 2.7263 3.3729 -0.6580 6 7 2.7355 3.3923 0.6411 7 6 2.3019 2.1847 1.0937 8 6 2.1584 1.7776 2.5032 9 8 1.7580 0.6622 2.7763 10 7 2.4708 2.6416 3.4893 11 6 2.3340 2.2349 4.8901 12 6 2.7568 3.3899 5.8001 13 6 2.6133 2.9654 7.2630 14 1 1.5952 2.6206 7.4431 15 6 2.9162 4.1582 8.1721 16 7 3.5571 1.8774 7.5520 17 6 3.0875 1.0583 8.6774 18 6 4.0794 -0.0445 8.9442 19 8 5.0792 -0.1386 8.2641 20 7 3.8553 -0.9263 9.9385 21 6 4.7573 -1.9299 10.1809 22 1 5.6476 -2.0136 9.5753 23 6 4.5260 -2.8393 11.2057 24 7 3.4425 -2.7377 11.9423 25 14 5.7554 -4.2063 11.5365 26 1 6.7664 -3.7362 12.5174 27 1 5.0449 -5.3887 12.0861 28 1 6.4322 -4.5807 10.2689 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.0192 4.1923 -1.2977 35 1 2.7904 3.5311 3.2715 36 1 1.2952 1.9741 5.0929 37 1 2.9696 1.3704 5.0812 38 1 3.7956 3.6507 5.5973 39 1 2.1212 4.2545 5.6090 40 1 2.8135 3.8559 9.2144 41 1 3.9344 4.5030 7.9921 42 1 2.2159 4.9655 7.9577 43 1 4.4823 2.2388 7.7291 44 1 2.9911 1.6825 9.5658 45 1 2.1184 0.6242 8.4314 46 1 3.0554 -0.8513 10.4822 47 1 3.2812 -3.3724 12.6579 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480755010.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:12 Heat of formation + Delta-G solvation = -93.684939 kcal Electronic energy + Delta-G solvation = -28402.235932 eV Core-core repulsion = 24198.982325 eV Total energy + Delta-G solvation = -4203.253607 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.47136 -40.63715 -40.19225 -38.32983 -36.19647 -35.93975 -35.70062 -35.03021 -33.32039 -32.58394 -30.59138 -29.58870 -27.95349 -26.11914 -25.60386 -24.63380 -23.80108 -22.36866 -21.95008 -21.32658 -21.02482 -19.92226 -19.22697 -17.88991 -17.73869 -17.23921 -17.01306 -16.83997 -16.66483 -16.35359 -15.99563 -15.89744 -15.61424 -15.58240 -15.21845 -14.82148 -14.51433 -14.46512 -14.24073 -14.03133 -13.59330 -13.55452 -13.49844 -13.09940 -12.85359 -12.71143 -12.67655 -12.46014 -12.42500 -12.32538 -12.21177 -12.15514 -12.09725 -11.81617 -11.73522 -11.50970 -11.18388 -10.34609 -10.24698 -10.01746 -9.89386 -9.24126 -8.47009 -5.95739 0.02168 1.04827 1.37200 1.40607 1.53750 1.53949 2.05591 2.12094 2.21826 2.28886 2.95298 3.09938 3.20211 3.54019 3.55687 3.75951 3.85857 4.06041 4.13157 4.21803 4.22237 4.27644 4.34509 4.46365 4.49429 4.53915 4.55437 4.62480 4.72411 4.75560 4.90259 4.92167 5.01440 5.09439 5.15810 5.18468 5.22293 5.24860 5.31920 5.40347 5.43054 5.92221 6.15084 6.28442 6.46859 6.59246 6.60182 7.10772 7.12415 7.56272 8.11935 8.70450 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012737 B = 0.002047 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.769116 B =13674.195161 C =15113.258510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.050 4.050 3 C 0.045 3.955 4 O -0.198 6.198 5 C 0.196 3.804 6 N -0.492 5.492 7 C -0.101 4.101 8 C 0.589 3.411 9 O -0.565 6.565 10 N -0.703 5.703 11 C 0.129 3.871 12 C -0.103 4.103 13 C 0.085 3.915 14 H 0.086 0.914 15 C -0.176 4.176 16 N -0.678 5.678 17 C 0.067 3.933 18 C 0.437 3.563 19 O -0.624 6.624 20 N -0.574 5.574 21 C -0.334 4.334 22 H 0.077 0.923 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.269 1.269 27 H -0.270 1.270 28 H -0.275 1.275 29 H 0.041 0.959 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.307 0.693 35 H 0.415 0.585 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.051 0.949 41 H 0.059 0.941 42 H 0.083 0.917 43 H 0.344 0.656 44 H 0.068 0.932 45 H 0.100 0.900 46 H 0.396 0.604 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.826 17.129 -23.066 29.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.087 4.087 3 C -0.012 4.012 4 O -0.084 6.084 5 C -0.032 4.032 6 N -0.220 5.220 7 C -0.220 4.220 8 C 0.376 3.624 9 O -0.445 6.445 10 N -0.353 5.353 11 C 0.005 3.995 12 C -0.142 4.142 13 C -0.025 4.025 14 H 0.104 0.896 15 C -0.234 4.234 16 N -0.311 5.311 17 C -0.066 4.066 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.212 5.212 21 C -0.463 4.463 22 H 0.095 0.905 23 C -0.214 4.214 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.194 1.194 27 H -0.195 1.195 28 H -0.200 1.200 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.127 0.873 33 H 0.114 0.886 34 H 0.322 0.678 35 H 0.252 0.748 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.117 0.883 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.102 0.898 43 H 0.163 0.837 44 H 0.086 0.914 45 H 0.118 0.882 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.604 16.261 -23.225 29.354 hybrid contribution 0.471 -0.275 1.016 1.153 sum -7.133 15.986 -22.209 28.279 Atomic orbital electron populations 1.21663 0.92283 1.03749 1.01851 1.20437 0.97734 0.84878 1.05630 1.24017 0.97834 0.95969 0.83397 1.84412 1.63646 1.24761 1.35583 1.29226 0.95898 0.87197 0.90872 1.70689 1.18738 1.20707 1.11871 1.21379 1.12617 0.92959 0.95024 1.17077 0.77369 0.84272 0.83704 1.90796 1.48395 1.21391 1.83902 1.45767 1.66123 1.17433 1.06004 1.21295 1.00889 0.98740 0.78526 1.21693 1.02903 0.96863 0.92709 1.21617 0.96634 0.89754 0.94488 0.89607 1.22429 1.02825 0.98776 0.99417 1.60206 1.05984 1.23863 1.41028 1.21536 0.97189 0.93535 0.94320 1.20960 0.88846 0.85692 0.82054 1.90490 1.32332 1.76807 1.51412 1.41946 1.22735 1.26262 1.30234 1.19651 1.03784 1.06988 1.15901 0.90490 1.26045 0.99177 1.00770 0.95376 1.69668 1.26822 1.38749 1.20871 0.84930 0.77746 0.77274 0.78391 1.19443 1.19460 1.19972 0.93989 0.91273 0.89705 0.87293 0.88616 0.67849 0.74818 0.92237 0.92990 0.90957 0.88310 0.92993 0.92202 0.89843 0.83667 0.91411 0.88228 0.76977 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.90 71.98 0.71 -1.49 16 2 C -0.05 -0.89 5.93 29.85 0.18 -0.72 16 3 C 0.05 0.92 6.69 25.19 0.17 1.09 16 4 O -0.20 -3.01 10.73 0.41 0.00 -3.01 16 5 C 0.20 2.20 13.19 130.52 1.72 3.92 16 6 N -0.49 -9.35 11.06 -305.16 -3.37 -12.72 16 7 C -0.10 -2.43 6.99 40.41 0.28 -2.14 16 8 C 0.59 16.96 7.81 86.66 0.68 17.64 16 9 O -0.57 -19.74 14.81 -4.07 -0.06 -19.80 16 10 N -0.70 -17.14 5.55 -466.38 -2.59 -19.73 16 11 C 0.13 3.31 5.56 86.38 0.48 3.79 16 12 C -0.10 -1.97 5.00 30.59 0.15 -1.82 16 13 C 0.09 1.84 2.59 44.92 0.12 1.95 16 14 H 0.09 1.78 7.80 -2.39 -0.02 1.76 16 15 C -0.18 -3.07 9.16 71.98 0.66 -2.41 16 16 N -0.68 -21.19 5.33 -495.56 -2.64 -23.83 16 17 C 0.07 2.32 5.97 85.56 0.51 2.83 16 18 C 0.44 21.44 7.82 87.66 0.69 22.12 16 19 O -0.62 -35.71 15.78 -3.06 -0.05 -35.76 16 20 N -0.57 -30.37 5.29 -306.99 -1.62 -31.99 16 21 C -0.33 -19.50 9.68 84.04 0.81 -18.68 16 22 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 23 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 24 N -0.92 -50.64 13.05 21.66 0.28 -50.36 16 25 Si 0.99 44.01 29.55 68.60 2.03 46.04 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 28 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 29 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.10 2.22 6.49 -2.39 -0.02 2.21 16 34 H 0.31 -0.51 8.06 -2.91 -0.02 -0.54 16 35 H 0.42 8.24 8.20 -92.71 -0.76 7.48 16 36 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.05 1.77 7.75 -2.39 -0.02 1.75 16 38 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.05 0.99 7.45 -2.38 -0.02 0.97 16 41 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 42 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.34 11.34 8.17 -89.70 -0.73 10.61 16 44 H 0.07 2.05 7.44 -2.39 -0.02 2.03 16 45 H 0.10 3.22 8.06 -2.39 -0.02 3.20 16 46 H 0.40 19.84 7.90 -92.70 -0.73 19.11 16 47 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -79.36 400.29 -1.60 -80.96 By element: Atomic # 1 Polarization: 45.61 SS G_CDS: -1.20 Total: 44.41 kcal Atomic # 6 Polarization: 18.16 SS G_CDS: 7.63 Total: 25.79 kcal Atomic # 7 Polarization: -128.68 SS G_CDS: -9.94 Total: -138.63 kcal Atomic # 8 Polarization: -58.47 SS G_CDS: -0.10 Total: -58.57 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -79.36 -1.60 -80.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480755010.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.723 kcal (2) G-P(sol) polarization free energy of solvation -79.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds