Wall clock time and date at job start Tue Mar 31 2020 22:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47194 * 2 1 4 4 O 1.34254 * 126.52475 * 269.97852 * 3 2 1 5 5 C 1.34053 * 108.22807 * 180.02562 * 4 3 2 6 6 N 1.29934 * 109.24077 * 359.97438 * 5 4 3 7 7 C 1.36066 * 108.47955 * 0.02562 * 6 5 4 8 8 C 1.47417 * 126.45114 * 180.02562 * 7 6 5 9 9 O 1.21609 * 120.00484 * 179.97438 * 8 7 6 10 10 N 1.34781 * 119.99472 * 359.95843 * 8 7 6 11 11 C 1.46500 * 119.99386 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.46724 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.46962 * 179.97438 * 12 11 10 14 14 H 1.09009 * 109.46990 * 54.99864 * 13 12 11 15 15 C 1.53000 * 109.46946 * 174.99501 * 13 12 11 16 16 N 1.46894 * 109.47427 * 294.99769 * 13 12 11 17 17 C 1.46894 * 111.00206 * 154.99934 * 16 13 12 18 18 C 1.50701 * 109.47000 * 180.02562 * 17 16 13 19 19 O 1.21290 * 120.00250 * 0.02562 * 18 17 16 20 20 N 1.34784 * 119.99801 * 179.97438 * 18 17 16 21 21 C 1.37094 * 119.99541 * 179.97438 * 20 18 17 22 22 H 1.08006 * 120.00722 * 0.02562 * 21 20 18 23 23 C 1.38956 * 119.99584 * 179.97438 * 21 20 18 24 24 N 1.31421 * 119.99821 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 119.99917 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47323 * 90.00345 * 25 23 21 27 27 H 1.48508 * 109.46701 * 209.99685 * 25 23 21 28 28 H 1.48498 * 109.47265 * 329.99470 * 25 23 21 29 29 H 1.09005 * 109.46881 * 299.99724 * 1 2 3 30 30 H 1.08995 * 109.47511 * 59.99561 * 1 2 3 31 31 H 1.09000 * 109.47132 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46881 * 240.00276 * 2 1 3 33 33 H 1.08995 * 109.47511 * 120.00439 * 2 1 3 34 34 H 1.07999 * 125.37670 * 179.97438 * 5 4 3 35 35 H 0.96995 * 120.00709 * 0.02562 * 10 8 7 36 36 H 1.09001 * 109.47531 * 299.99985 * 11 10 8 37 37 H 1.08998 * 109.47605 * 59.99911 * 11 10 8 38 38 H 1.08997 * 109.46966 * 299.99630 * 12 11 10 39 39 H 1.08994 * 109.47451 * 59.99983 * 12 11 10 40 40 H 1.09001 * 109.47174 * 60.00067 * 15 13 12 41 41 H 1.08997 * 109.46917 * 179.97438 * 15 13 12 42 42 H 1.08999 * 109.47291 * 300.00222 * 15 13 12 43 43 H 1.00904 * 110.99988 * 278.96076 * 16 13 12 44 44 H 1.08998 * 109.47251 * 300.00148 * 17 16 13 45 45 H 1.08997 * 109.47373 * 60.00056 * 17 16 13 46 46 H 0.96992 * 120.00277 * 0.02562 * 20 18 17 47 47 H 0.97000 * 119.99402 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2991 2.1740 -1.0789 5 6 2.7238 3.3738 -0.6580 6 7 2.7303 3.3942 0.6411 7 6 2.3022 2.1845 1.0936 8 6 2.1571 1.7780 2.5032 9 8 1.7615 0.6609 2.7763 10 7 2.4632 2.6443 3.4893 11 6 2.3185 2.2404 4.8900 12 6 2.7281 3.4002 5.8000 13 6 2.5763 2.9787 7.2630 14 1 3.1457 2.0660 7.4391 15 6 3.1027 4.0915 8.1716 16 7 1.1579 2.7356 7.5580 17 6 1.0065 1.8027 8.6825 18 6 -0.4586 1.5777 8.9547 19 8 -1.2943 2.1389 8.2781 20 7 -0.8402 0.7520 9.9494 21 6 -2.1730 0.5478 10.1972 22 1 -2.9172 1.0482 9.5953 23 6 -2.5664 -0.3038 11.2223 24 7 -3.8440 -0.5000 11.4597 25 14 -1.2793 -1.1698 12.2629 26 1 -0.9374 -0.3226 13.4336 27 1 -1.8175 -2.4712 12.7342 28 1 -0.0600 -1.4041 11.4484 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.0146 4.1939 -1.2978 35 1 2.7786 3.5353 3.2716 36 1 1.2797 1.9746 5.0861 37 1 2.9573 1.3797 5.0880 38 1 3.7667 3.6664 5.6041 39 1 2.0889 4.2606 5.6021 40 1 2.5334 5.0042 7.9955 41 1 2.9942 3.7914 9.2138 42 1 4.1552 4.2719 7.9527 43 1 0.6725 3.6016 7.7386 44 1 1.4793 0.8529 8.4329 45 1 1.4809 2.2226 9.5695 46 1 -0.1719 0.3030 10.4902 47 1 -4.1186 -1.0942 12.1755 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480755011.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:16 Heat of formation + Delta-G solvation = -56.786322 kcal Electronic energy + Delta-G solvation = -28486.500606 eV Core-core repulsion = 24284.847043 eV Total energy + Delta-G solvation = -4201.653563 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.78185 -39.61054 -38.60526 -37.18910 -35.26095 -34.93347 -34.26554 -33.90111 -31.75299 -31.41742 -29.79249 -28.76282 -26.48194 -25.17592 -24.02372 -23.73595 -22.89851 -21.57536 -21.03908 -20.38834 -19.34941 -18.49700 -18.22218 -17.17420 -16.46404 -16.12953 -16.04691 -15.67311 -15.36231 -15.23538 -14.82788 -14.79209 -14.72728 -14.06561 -13.92292 -13.73308 -13.40482 -13.29708 -13.10072 -12.89257 -12.78557 -12.35160 -12.17646 -12.02367 -11.91477 -11.72919 -11.60735 -11.53963 -11.35502 -11.24780 -11.13026 -11.07177 -10.89931 -10.56979 -10.17630 -9.94443 -9.53968 -9.34074 -9.01637 -8.55772 -8.15965 -8.08497 -6.27971 -3.79126 0.80537 1.73740 2.20762 3.00914 3.05456 3.08709 3.16057 3.17183 3.70817 3.78206 4.10492 4.14175 4.25015 4.52530 4.68416 4.74032 4.86372 4.90994 4.96909 5.01311 5.13259 5.22963 5.25102 5.28792 5.37377 5.46521 5.53619 5.58664 5.60920 5.70986 5.71564 5.74339 5.82137 5.90270 5.95953 5.96955 6.03394 6.10756 6.23893 6.38854 7.04383 7.13778 7.45311 7.60457 7.62328 8.07973 8.18083 8.63274 8.98483 9.45947 9.86613 10.85259 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013452 B = 0.002123 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.015977 B =13183.109800 C =14623.425171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.047 4.047 3 C 0.048 3.952 4 O -0.200 6.200 5 C 0.172 3.828 6 N -0.464 5.464 7 C -0.076 4.076 8 C 0.598 3.402 9 O -0.528 6.528 10 N -0.712 5.712 11 C 0.122 3.878 12 C -0.116 4.116 13 C 0.085 3.915 14 H 0.080 0.920 15 C -0.183 4.183 16 N -0.663 5.663 17 C 0.048 3.952 18 C 0.450 3.550 19 O -0.564 6.564 20 N -0.592 5.592 21 C -0.304 4.304 22 H 0.119 0.881 23 C 0.040 3.960 24 N -0.882 5.882 25 Si 0.880 3.120 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.269 1.269 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.118 0.882 34 H 0.254 0.746 35 H 0.405 0.595 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.352 0.648 44 H 0.087 0.913 45 H 0.044 0.956 46 H 0.370 0.630 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.809 6.844 -21.078 29.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.085 4.085 3 C -0.009 4.009 4 O -0.086 6.086 5 C -0.057 4.057 6 N -0.193 5.193 7 C -0.196 4.196 8 C 0.383 3.617 9 O -0.405 6.405 10 N -0.363 5.363 11 C 0.000 4.000 12 C -0.154 4.154 13 C -0.026 4.026 14 H 0.098 0.902 15 C -0.242 4.242 16 N -0.295 5.295 17 C -0.085 4.085 18 C 0.236 3.764 19 O -0.446 6.446 20 N -0.231 5.231 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.163 4.163 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.194 1.194 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.136 0.864 34 H 0.270 0.730 35 H 0.240 0.760 36 H 0.110 0.890 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.172 0.828 44 H 0.105 0.895 45 H 0.062 0.938 46 H 0.203 0.797 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 18.871 6.330 -21.295 29.149 hybrid contribution 1.231 -0.007 1.123 1.666 sum 20.103 6.324 -20.172 29.172 Atomic orbital electron populations 1.21719 0.92773 1.03216 1.02595 1.20427 0.97353 0.85222 1.05454 1.23885 0.98076 0.95634 0.83282 1.84381 1.63647 1.24194 1.36359 1.27992 0.99338 0.87129 0.91232 1.70717 1.17247 1.21158 1.10203 1.21550 1.10782 0.91476 0.95765 1.16678 0.77778 0.84706 0.82497 1.90824 1.46502 1.20076 1.83112 1.45831 1.66944 1.17075 1.06446 1.21451 1.03936 0.97004 0.77656 1.21748 1.01137 0.98333 0.94196 1.21506 0.89650 0.97893 0.93532 0.90181 1.22513 1.01669 0.99651 1.00359 1.60190 1.09755 1.18031 1.41542 1.21735 0.96219 0.97816 0.92737 1.19734 0.89609 0.83847 0.83203 1.90568 1.53154 1.51299 1.49539 1.42210 1.08007 1.42106 1.30810 1.19433 0.81660 1.26087 1.16050 0.86305 1.25046 0.96217 0.97491 0.97500 1.69630 1.14076 1.37143 1.31387 0.86667 0.81379 0.80275 0.81048 1.19717 1.20189 1.19444 0.91504 0.92660 0.90824 0.89761 0.86355 0.72991 0.76003 0.89015 0.91780 0.91391 0.90975 0.92202 0.92403 0.92153 0.82828 0.89469 0.93755 0.79724 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.90 37.16 0.37 -0.91 16 2 C -0.05 -0.42 5.93 -27.88 -0.17 -0.58 16 3 C 0.05 0.49 6.69 -35.08 -0.23 0.26 16 4 O -0.20 -1.71 10.73 6.51 0.07 -1.64 16 5 C 0.17 1.18 13.19 51.96 0.69 1.87 16 6 N -0.46 -4.66 11.06 -11.48 -0.13 -4.78 16 7 C -0.08 -0.89 6.99 -83.02 -0.58 -1.47 16 8 C 0.60 8.08 7.81 -12.52 -0.10 7.99 16 9 O -0.53 -8.47 14.80 5.27 0.08 -8.40 16 10 N -0.71 -8.30 5.55 -61.38 -0.34 -8.64 16 11 C 0.12 1.48 5.56 -4.04 -0.02 1.46 16 12 C -0.12 -1.12 5.01 -26.73 -0.13 -1.25 16 13 C 0.09 0.92 2.59 -67.71 -0.18 0.74 16 14 H 0.08 0.83 7.80 -51.92 -0.40 0.43 16 15 C -0.18 -1.68 9.16 37.16 0.34 -1.34 16 16 N -0.66 -9.81 5.32 -108.00 -0.58 -10.39 16 17 C 0.05 0.78 5.97 -4.98 -0.03 0.75 16 18 C 0.45 10.30 7.82 -10.98 -0.09 10.21 16 19 O -0.56 -15.29 15.78 5.55 0.09 -15.20 16 20 N -0.59 -14.27 5.09 -10.96 -0.06 -14.33 16 21 C -0.30 -8.71 10.16 -14.93 -0.15 -8.86 16 22 H 0.12 3.90 7.39 -52.48 -0.39 3.51 16 23 C 0.04 1.12 5.50 -17.46 -0.10 1.02 16 24 N -0.88 -26.10 13.96 55.50 0.77 -25.32 16 25 Si 0.88 19.61 27.74 -169.99 -4.71 14.89 16 26 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.12 1.21 6.48 -51.93 -0.34 0.87 16 34 H 0.25 0.36 8.06 -52.49 -0.42 -0.06 16 35 H 0.41 3.99 8.20 -40.82 -0.33 3.66 16 36 H 0.09 1.43 7.75 -51.93 -0.40 1.02 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 41 H 0.06 0.56 7.45 -51.93 -0.39 0.17 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.35 5.46 8.17 -39.29 -0.32 5.14 16 44 H 0.09 1.30 8.05 -51.93 -0.42 0.89 16 45 H 0.04 0.63 7.43 -51.93 -0.39 0.24 16 46 H 0.37 7.83 5.76 -40.82 -0.24 7.59 16 47 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 397.17 15.07 5.99 5.99 Total: -1.00 -36.07 397.17 -6.21 -42.28 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -7.01 Total: 15.67 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: -0.38 Total: 9.87 kcal Atomic # 7 Polarization: -63.14 SS G_CDS: -0.32 Total: -63.46 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: 0.24 Total: -25.24 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.71 Total: 14.89 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.07 -6.21 -42.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480755011.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.508 kcal (2) G-P(sol) polarization free energy of solvation -36.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds