Wall clock time and date at job start Tue Mar 31 2020 22:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47194 * 2 1 4 4 O 1.34254 * 126.52475 * 269.97852 * 3 2 1 5 5 C 1.34053 * 108.22807 * 180.02562 * 4 3 2 6 6 N 1.29934 * 109.24077 * 359.97438 * 5 4 3 7 7 C 1.36066 * 108.47955 * 0.02562 * 6 5 4 8 8 C 1.47417 * 126.45114 * 180.02562 * 7 6 5 9 9 O 1.21609 * 120.00484 * 179.97438 * 8 7 6 10 10 N 1.34781 * 119.99472 * 359.95843 * 8 7 6 11 11 C 1.46500 * 119.99386 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.46724 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.46962 * 179.97438 * 12 11 10 14 14 H 1.09009 * 109.46990 * 54.99864 * 13 12 11 15 15 C 1.53000 * 109.46946 * 174.99501 * 13 12 11 16 16 N 1.46894 * 109.47427 * 294.99769 * 13 12 11 17 17 C 1.46894 * 111.00206 * 154.99934 * 16 13 12 18 18 C 1.50701 * 109.47000 * 180.02562 * 17 16 13 19 19 O 1.21290 * 120.00250 * 0.02562 * 18 17 16 20 20 N 1.34784 * 119.99801 * 179.97438 * 18 17 16 21 21 C 1.37094 * 119.99541 * 179.97438 * 20 18 17 22 22 H 1.08006 * 120.00722 * 0.02562 * 21 20 18 23 23 C 1.38956 * 119.99584 * 179.97438 * 21 20 18 24 24 N 1.31421 * 119.99821 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 119.99917 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47323 * 90.00345 * 25 23 21 27 27 H 1.48508 * 109.46701 * 209.99685 * 25 23 21 28 28 H 1.48498 * 109.47265 * 329.99470 * 25 23 21 29 29 H 1.09005 * 109.46881 * 299.99724 * 1 2 3 30 30 H 1.08995 * 109.47511 * 59.99561 * 1 2 3 31 31 H 1.09000 * 109.47132 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46881 * 240.00276 * 2 1 3 33 33 H 1.08995 * 109.47511 * 120.00439 * 2 1 3 34 34 H 1.07999 * 125.37670 * 179.97438 * 5 4 3 35 35 H 0.96995 * 120.00709 * 0.02562 * 10 8 7 36 36 H 1.09001 * 109.47531 * 299.99985 * 11 10 8 37 37 H 1.08998 * 109.47605 * 59.99911 * 11 10 8 38 38 H 1.08997 * 109.46966 * 299.99630 * 12 11 10 39 39 H 1.08994 * 109.47451 * 59.99983 * 12 11 10 40 40 H 1.09001 * 109.47174 * 60.00067 * 15 13 12 41 41 H 1.08997 * 109.46917 * 179.97438 * 15 13 12 42 42 H 1.08999 * 109.47291 * 300.00222 * 15 13 12 43 43 H 1.00904 * 110.99988 * 278.96076 * 16 13 12 44 44 H 1.08998 * 109.47251 * 300.00148 * 17 16 13 45 45 H 1.08997 * 109.47373 * 60.00056 * 17 16 13 46 46 H 0.96992 * 120.00277 * 0.02562 * 20 18 17 47 47 H 0.97000 * 119.99402 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2991 2.1740 -1.0789 5 6 2.7238 3.3738 -0.6580 6 7 2.7303 3.3942 0.6411 7 6 2.3022 2.1845 1.0936 8 6 2.1571 1.7780 2.5032 9 8 1.7615 0.6609 2.7763 10 7 2.4632 2.6443 3.4893 11 6 2.3185 2.2404 4.8900 12 6 2.7281 3.4002 5.8000 13 6 2.5763 2.9787 7.2630 14 1 3.1457 2.0660 7.4391 15 6 3.1027 4.0915 8.1716 16 7 1.1579 2.7356 7.5580 17 6 1.0065 1.8027 8.6825 18 6 -0.4586 1.5777 8.9547 19 8 -1.2943 2.1389 8.2781 20 7 -0.8402 0.7520 9.9494 21 6 -2.1730 0.5478 10.1972 22 1 -2.9172 1.0482 9.5953 23 6 -2.5664 -0.3038 11.2223 24 7 -3.8440 -0.5000 11.4597 25 14 -1.2793 -1.1698 12.2629 26 1 -0.9374 -0.3226 13.4336 27 1 -1.8175 -2.4712 12.7342 28 1 -0.0600 -1.4041 11.4484 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.0146 4.1939 -1.2978 35 1 2.7786 3.5353 3.2716 36 1 1.2797 1.9746 5.0861 37 1 2.9573 1.3797 5.0880 38 1 3.7667 3.6664 5.6041 39 1 2.0889 4.2606 5.6021 40 1 2.5334 5.0042 7.9955 41 1 2.9942 3.7914 9.2138 42 1 4.1552 4.2719 7.9527 43 1 0.6725 3.6016 7.7386 44 1 1.4793 0.8529 8.4329 45 1 1.4809 2.2226 9.5695 46 1 -0.1719 0.3030 10.4902 47 1 -4.1186 -1.0942 12.1755 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480755011.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:15 Heat of formation + Delta-G solvation = -88.953672 kcal Electronic energy + Delta-G solvation = -28487.895487 eV Core-core repulsion = 24284.847043 eV Total energy + Delta-G solvation = -4203.048444 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.47149 -40.64442 -40.32239 -38.35287 -36.20722 -35.96412 -35.71412 -35.03573 -33.76473 -32.65573 -30.60140 -29.59631 -28.07497 -26.08065 -25.44869 -24.63372 -23.78783 -22.36882 -21.94527 -21.37366 -21.18323 -20.27440 -19.22153 -17.88489 -17.73094 -17.24669 -17.03349 -16.92490 -16.70951 -16.44289 -15.93877 -15.90240 -15.61413 -15.50332 -14.99692 -14.81417 -14.59246 -14.43633 -14.41532 -14.26654 -13.89323 -13.59625 -13.57798 -13.14025 -12.86794 -12.72838 -12.67619 -12.45419 -12.42190 -12.32508 -12.18114 -12.16289 -11.97816 -11.82264 -11.71968 -11.51280 -11.18272 -10.43562 -10.25203 -10.24408 -9.89398 -9.24029 -8.41689 -6.02514 0.01974 1.04666 1.29922 1.35008 1.44246 1.54041 1.96279 2.12361 2.21932 2.22789 2.74873 3.09892 3.14846 3.44937 3.54035 3.76036 3.86148 4.05853 4.12824 4.14186 4.20655 4.27194 4.29056 4.43464 4.47937 4.52981 4.56180 4.60135 4.72612 4.75293 4.90342 4.91246 5.02250 5.08690 5.15859 5.18839 5.21923 5.24960 5.33668 5.43449 5.53117 5.91824 6.11577 6.28323 6.45093 6.59089 6.59938 6.88010 7.10716 7.39737 7.96936 8.76153 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013452 B = 0.002123 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.015977 B =13183.109800 C =14623.425171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.046 4.046 3 C 0.045 3.955 4 O -0.198 6.198 5 C 0.196 3.804 6 N -0.492 5.492 7 C -0.102 4.102 8 C 0.590 3.410 9 O -0.565 6.565 10 N -0.703 5.703 11 C 0.128 3.872 12 C -0.105 4.105 13 C 0.086 3.914 14 H 0.091 0.909 15 C -0.176 4.176 16 N -0.683 5.683 17 C 0.063 3.937 18 C 0.447 3.553 19 O -0.615 6.615 20 N -0.592 5.592 21 C -0.329 4.329 22 H 0.053 0.947 23 C -0.017 4.017 24 N -0.935 5.935 25 Si 0.966 3.034 26 H -0.255 1.255 27 H -0.275 1.275 28 H -0.232 1.232 29 H 0.035 0.965 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.307 0.693 35 H 0.415 0.585 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.099 0.901 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.082 0.918 43 H 0.344 0.656 44 H 0.110 0.890 45 H 0.079 0.921 46 H 0.390 0.610 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.088 7.190 -21.506 33.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.084 4.084 3 C -0.013 4.013 4 O -0.084 6.084 5 C -0.032 4.032 6 N -0.220 5.220 7 C -0.220 4.220 8 C 0.376 3.624 9 O -0.445 6.445 10 N -0.354 5.354 11 C 0.005 3.995 12 C -0.143 4.143 13 C -0.024 4.024 14 H 0.109 0.891 15 C -0.235 4.235 16 N -0.316 5.316 17 C -0.069 4.069 18 C 0.235 3.765 19 O -0.499 6.499 20 N -0.234 5.234 21 C -0.458 4.458 22 H 0.071 0.929 23 C -0.216 4.216 24 N -0.576 5.576 25 Si 0.786 3.214 26 H -0.179 1.179 27 H -0.200 1.200 28 H -0.155 1.155 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.130 0.870 33 H 0.118 0.882 34 H 0.321 0.679 35 H 0.252 0.748 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.117 0.883 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.101 0.899 43 H 0.164 0.836 44 H 0.128 0.872 45 H 0.097 0.903 46 H 0.225 0.775 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 23.198 6.716 -21.722 32.482 hybrid contribution -0.174 0.014 1.079 1.093 sum 23.023 6.730 -20.643 31.647 Atomic orbital electron populations 1.21684 0.92932 1.03706 1.01593 1.20420 0.97130 0.84928 1.05885 1.24027 0.97736 0.96108 0.83399 1.84413 1.63701 1.24695 1.35604 1.29224 0.95992 0.87114 0.90882 1.70690 1.18896 1.20561 1.11859 1.21394 1.12662 0.92865 0.95079 1.17068 0.77214 0.84437 0.83689 1.90793 1.48197 1.21568 1.83894 1.45775 1.66263 1.17275 1.06068 1.21317 1.01452 0.98273 0.78472 1.21706 1.02795 0.96876 0.92931 1.21616 0.87200 0.99241 0.94297 0.89116 1.22436 1.02881 0.98603 0.99589 1.60187 1.12622 1.17642 1.41107 1.21641 0.90761 0.99659 0.94856 1.21083 0.92356 0.81661 0.81352 1.90544 1.55651 1.52764 1.50990 1.42042 1.06507 1.43024 1.31822 1.19003 0.82947 1.27241 1.16592 0.92855 1.26153 0.99221 0.97679 0.98513 1.69816 1.17197 1.38117 1.32456 0.85346 0.78675 0.78351 0.79028 1.17905 1.20031 1.15540 0.94575 0.91419 0.89652 0.86975 0.88191 0.67877 0.74847 0.93053 0.91999 0.88305 0.91196 0.92457 0.92588 0.89895 0.83645 0.87246 0.90293 0.77474 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.90 71.98 0.71 -1.84 16 2 C -0.05 -0.82 5.93 29.85 0.18 -0.64 16 3 C 0.04 0.89 6.69 25.19 0.17 1.06 16 4 O -0.20 -2.98 10.73 0.38 0.00 -2.97 16 5 C 0.20 2.16 13.19 130.52 1.72 3.88 16 6 N -0.49 -9.21 11.06 -305.15 -3.37 -12.58 16 7 C -0.10 -2.39 6.99 40.41 0.28 -2.11 16 8 C 0.59 16.61 7.81 86.66 0.68 17.28 16 9 O -0.56 -19.32 14.80 -4.06 -0.06 -19.38 16 10 N -0.70 -16.61 5.55 -466.37 -2.59 -19.20 16 11 C 0.13 3.12 5.56 86.38 0.48 3.60 16 12 C -0.10 -1.84 5.01 30.60 0.15 -1.69 16 13 C 0.09 1.65 2.59 44.92 0.12 1.77 16 14 H 0.09 1.58 7.80 -2.38 -0.02 1.56 16 15 C -0.18 -2.66 9.16 71.98 0.66 -2.00 16 16 N -0.68 -19.69 5.32 -495.59 -2.64 -22.33 16 17 C 0.06 1.94 5.97 85.56 0.51 2.45 16 18 C 0.45 20.74 7.82 87.66 0.69 21.42 16 19 O -0.62 -35.14 15.78 -3.06 -0.05 -35.19 16 20 N -0.59 -28.67 5.09 -306.97 -1.56 -30.23 16 21 C -0.33 -19.75 10.16 84.04 0.85 -18.90 16 22 H 0.05 3.82 7.39 -2.91 -0.02 3.80 16 23 C -0.02 -0.98 5.50 84.93 0.47 -0.51 16 24 N -0.94 -57.50 13.96 21.67 0.30 -57.20 16 25 Si 0.97 39.57 27.74 68.60 1.90 41.47 16 26 H -0.25 -9.77 7.11 99.48 0.71 -9.07 16 27 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 28 H -0.23 -8.06 6.52 99.48 0.65 -7.41 16 29 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.10 2.17 6.48 -2.39 -0.02 2.15 16 34 H 0.31 -0.55 8.06 -2.91 -0.02 -0.58 16 35 H 0.41 7.98 8.20 -92.71 -0.76 7.22 16 36 H 0.05 1.69 7.75 -2.39 -0.02 1.67 16 37 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 41 H 0.06 0.88 7.45 -2.39 -0.02 0.87 16 42 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.34 10.70 8.17 -89.69 -0.73 9.97 16 44 H 0.11 2.94 8.05 -2.39 -0.02 2.92 16 45 H 0.08 1.94 7.43 -2.39 -0.02 1.92 16 46 H 0.39 15.58 5.76 -92.71 -0.53 15.05 16 47 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -87.79 397.17 -1.46 -89.25 By element: Atomic # 1 Polarization: 45.63 SS G_CDS: -1.06 Total: 44.57 kcal Atomic # 6 Polarization: 16.12 SS G_CDS: 7.67 Total: 23.79 kcal Atomic # 7 Polarization: -131.67 SS G_CDS: -9.86 Total: -141.54 kcal Atomic # 8 Polarization: -57.44 SS G_CDS: -0.10 Total: -57.54 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 1.90 Total: 41.47 kcal Total: -87.79 -1.46 -89.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480755011.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.293 kcal (2) G-P(sol) polarization free energy of solvation -87.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds