Wall clock time and date at job start Tue Mar 31 2020 21:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30617 * 125.42024 * 2 1 4 4 C 1.33694 * 108.98935 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.26881 * 180.02562 * 4 3 2 6 6 C 1.36335 * 107.45750 * 0.02562 * 4 3 2 7 7 C 1.46726 * 126.64642 * 179.97438 * 6 4 3 8 8 O 1.21681 * 119.99751 * 0.02562 * 7 6 4 9 9 N 1.34773 * 119.99932 * 180.02562 * 7 6 4 10 10 C 1.46496 * 119.99934 * 180.02562 * 9 7 6 11 11 C 1.52994 * 109.47355 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.47392 * 54.99840 * 11 10 9 13 13 C 1.53003 * 109.46945 * 294.99481 * 11 10 9 14 14 C 1.53006 * 109.47452 * 174.99751 * 11 10 9 15 15 N 1.46898 * 109.47138 * 184.99841 * 14 11 10 16 16 C 1.46906 * 110.99888 * 180.02562 * 15 14 11 17 17 C 1.50699 * 109.47140 * 179.97438 * 16 15 14 18 18 O 1.21289 * 119.99678 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99614 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99518 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00466 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00085 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99807 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00303 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46922 * 90.00327 * 24 22 20 26 26 H 1.48500 * 109.47032 * 210.00074 * 24 22 20 27 27 H 1.48489 * 109.47076 * 330.00276 * 24 22 20 28 28 O 1.33660 * 125.42014 * 180.29169 * 2 1 3 29 29 H 1.08996 * 109.46912 * 90.02217 * 1 2 3 30 30 H 1.09003 * 109.46909 * 210.01916 * 1 2 3 31 31 H 1.08999 * 109.46938 * 330.02515 * 1 2 3 32 32 H 1.09000 * 109.47212 * 269.97190 * 5 4 3 33 33 H 1.09001 * 109.47350 * 29.97197 * 5 4 3 34 34 H 1.09002 * 109.47310 * 149.97729 * 5 4 3 35 35 H 0.97001 * 120.00253 * 0.02562 * 9 7 6 36 36 H 1.08997 * 109.47613 * 59.99832 * 10 9 7 37 37 H 1.09003 * 109.47151 * 300.00236 * 10 9 7 38 38 H 1.08999 * 109.47096 * 180.02562 * 13 11 10 39 39 H 1.08996 * 109.47132 * 299.99905 * 13 11 10 40 40 H 1.09000 * 109.46878 * 60.00403 * 13 11 10 41 41 H 1.08997 * 109.46770 * 64.99788 * 14 11 10 42 42 H 1.08995 * 109.47019 * 305.00001 * 14 11 10 43 43 H 1.00901 * 111.00121 * 56.04666 * 15 14 11 44 44 H 1.09004 * 109.47040 * 299.99934 * 16 15 14 45 45 H 1.09000 * 109.47033 * 59.99886 * 16 15 14 46 46 H 0.96996 * 120.00269 * 359.97438 * 19 17 16 47 47 H 0.97002 * 120.00022 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2641 1.0644 0.0000 4 6 3.5464 0.6863 -0.0006 5 6 4.7452 1.5995 -0.0002 6 6 3.5709 -0.6769 -0.0015 7 6 4.7636 -1.5314 -0.0029 8 8 5.8719 -1.0291 -0.0029 9 7 4.6316 -2.8727 -0.0043 10 6 5.8225 -3.7259 -0.0051 11 6 5.3970 -5.1955 -0.0072 12 1 4.7300 -5.3794 -0.8494 13 6 4.6693 -5.5176 1.2996 14 6 6.6355 -6.0849 -0.1339 15 7 6.2199 -7.4885 -0.2562 16 6 7.3857 -8.3739 -0.3795 17 6 6.9210 -9.8022 -0.5021 18 8 5.7354 -10.0574 -0.4886 19 7 7.8230 -10.7959 -0.6267 20 6 7.4002 -12.0952 -0.7387 21 1 6.3445 -12.3226 -0.7267 22 6 8.3300 -13.1197 -0.8677 23 7 9.6146 -12.8431 -0.8828 24 14 7.7540 -14.8902 -1.0196 25 1 7.5562 -15.2251 -2.4527 26 1 8.7768 -15.7952 -0.4364 27 1 6.4714 -15.0577 -0.2905 28 8 2.2817 -1.0892 -0.0055 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5141 31 1 -0.3633 0.8902 0.5134 32 1 5.0343 1.8200 -1.0278 33 1 4.4949 2.5275 0.5139 34 1 5.5736 1.1116 0.5134 35 1 3.7481 -3.2731 -0.0047 36 1 6.4171 -3.5207 0.8851 37 1 6.4171 -3.5189 -0.8948 38 1 4.3666 -6.5647 1.2983 39 1 5.3364 -5.3337 2.1418 40 1 3.7870 -4.8840 1.3898 41 1 7.2598 -5.9667 0.7518 42 1 7.2019 -5.7952 -1.0189 43 1 5.5879 -7.6121 -1.0330 44 1 7.9577 -8.1002 -1.2661 45 1 8.0148 -8.2715 0.5047 46 1 8.7712 -10.5917 -0.6378 47 1 10.2637 -13.5583 -0.9725 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482087714.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:04 Heat of formation + Delta-G solvation = -62.938939 kcal Electronic energy + Delta-G solvation = -27817.161026 eV Core-core repulsion = 23615.240665 eV Total energy + Delta-G solvation = -4201.920361 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.89315 -40.00145 -38.40025 -37.31599 -35.87068 -34.92653 -33.88518 -33.28382 -32.37959 -31.20631 -29.82156 -28.38267 -27.42091 -26.42705 -24.83319 -23.31430 -22.46206 -22.07734 -21.05728 -20.59161 -19.26234 -18.50296 -17.86773 -17.52453 -16.62733 -16.23797 -15.96893 -15.87874 -15.39134 -14.89019 -14.78405 -14.64851 -14.36473 -14.22277 -13.78055 -13.67580 -13.58069 -13.55199 -13.39838 -13.20262 -13.18703 -12.66808 -12.55851 -12.42305 -11.97872 -11.70619 -11.53340 -11.42865 -11.30975 -11.19555 -11.13474 -11.01369 -10.93472 -10.51124 -10.40407 -10.22886 -9.61341 -9.52141 -9.15977 -8.48284 -8.08071 -7.97129 -6.42807 -3.83758 0.36143 1.91362 1.93023 2.67913 2.72738 3.16912 3.25698 3.31629 3.40241 3.89605 4.05848 4.24880 4.25224 4.26958 4.64637 4.69020 4.73407 4.76932 4.84854 4.91530 5.09786 5.14284 5.18574 5.24454 5.27298 5.28701 5.39861 5.45794 5.49794 5.54918 5.63848 5.70923 5.82298 5.84612 5.86533 5.94983 5.96676 6.13017 6.25265 6.35529 6.90297 7.16815 7.17549 7.54066 7.61839 7.63165 8.05095 8.60000 9.16670 9.53162 10.04447 10.74870 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.029325 B = 0.001493 C = 0.001434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.591683 B =18749.006861 C =19518.914395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.223 3.777 3 N -0.491 5.491 4 C 0.085 3.915 5 C -0.082 4.082 6 C -0.123 4.123 7 C 0.609 3.391 8 O -0.514 6.514 9 N -0.714 5.714 10 C 0.123 3.877 11 C -0.100 4.100 12 H 0.078 0.922 13 C -0.141 4.141 14 C 0.066 3.934 15 N -0.666 5.666 16 C 0.051 3.949 17 C 0.441 3.559 18 O -0.584 6.584 19 N -0.564 5.564 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 O -0.189 6.189 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.406 0.594 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.054 0.946 40 H 0.043 0.957 41 H 0.075 0.925 42 H 0.030 0.970 43 H 0.349 0.651 44 H 0.044 0.956 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.351 27.252 1.714 29.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.018 3.982 3 N -0.222 5.222 4 C -0.039 4.039 5 C -0.139 4.139 6 C -0.178 4.178 7 C 0.395 3.605 8 O -0.392 6.392 9 N -0.365 5.365 10 C 0.000 4.000 11 C -0.120 4.120 12 H 0.096 0.904 13 C -0.199 4.199 14 C -0.064 4.064 15 N -0.298 5.298 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 O -0.076 6.076 29 H 0.118 0.882 30 H 0.113 0.887 31 H 0.124 0.876 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.115 0.885 35 H 0.242 0.758 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.094 0.906 42 H 0.048 0.952 43 H 0.168 0.832 44 H 0.062 0.938 45 H 0.104 0.896 46 H 0.226 0.774 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.487 27.708 2.389 30.486 hybrid contribution 0.483 -1.517 -1.041 1.902 sum -12.004 26.192 1.348 28.843 Atomic orbital electron populations 1.20420 0.80584 1.05743 1.05291 1.26606 0.96719 0.78559 0.96347 1.70380 1.01632 1.29941 1.20222 1.22100 0.93494 0.91277 0.97022 1.20416 0.92158 0.97493 1.03847 1.22859 0.82370 0.95190 1.17404 1.16266 0.85441 0.81618 0.77203 1.90872 1.23686 1.73868 1.50737 1.45901 1.11135 1.05246 1.74170 1.21519 0.86607 0.88888 1.02996 1.21352 0.98246 0.92126 1.00238 0.90404 1.21771 0.99158 1.03161 0.95763 1.21888 0.95373 0.88276 1.00856 1.60029 1.16029 1.02924 1.50859 1.21669 0.92668 0.92807 1.01042 1.19805 0.86995 0.86169 0.84427 1.90517 1.16622 1.83941 1.55753 1.41865 1.08405 1.06046 1.63696 1.19705 0.94746 0.81555 1.46977 0.87920 1.25266 0.94878 1.00467 0.97319 1.69615 1.00389 1.33996 1.50270 0.85850 0.78418 0.81504 0.78474 1.20436 1.20913 1.19414 1.84440 1.16157 1.37364 1.69671 0.88250 0.88723 0.87604 0.89870 0.90374 0.88539 0.75849 0.90607 0.90892 0.90263 0.92666 0.93768 0.90626 0.95178 0.83222 0.93846 0.89559 0.77446 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.19 10.51 36.01 0.38 0.19 16 2 C 0.22 1.78 8.32 -12.79 -0.11 1.67 16 3 N -0.49 -4.98 11.26 -7.07 -0.08 -5.06 16 4 C 0.09 0.89 7.16 -82.47 -0.59 0.30 16 5 C -0.08 -0.70 9.87 36.01 0.36 -0.34 16 6 C -0.12 -1.29 7.18 -36.84 -0.26 -1.55 16 7 C 0.61 6.61 7.79 -12.83 -0.10 6.51 16 8 O -0.51 -6.69 14.79 5.21 0.08 -6.61 16 9 N -0.71 -6.35 5.28 -61.61 -0.33 -6.68 16 10 C 0.12 1.10 5.06 -4.05 -0.02 1.08 16 11 C -0.10 -0.93 2.57 -90.62 -0.23 -1.16 16 12 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 13 C -0.14 -1.39 8.95 37.16 0.33 -1.06 16 14 C 0.07 0.74 5.07 -3.82 -0.02 0.72 16 15 N -0.67 -10.08 5.58 -115.05 -0.64 -10.72 16 16 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 17 C 0.44 10.27 7.82 -10.99 -0.09 10.18 16 18 O -0.58 -15.65 15.78 5.55 0.09 -15.56 16 19 N -0.56 -14.20 5.29 -10.97 -0.06 -14.26 16 20 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.44 13.05 55.50 0.72 -23.71 16 24 Si 0.93 20.96 29.55 -169.99 -5.02 15.94 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 O -0.19 -1.72 10.57 4.42 0.05 -1.67 16 29 H 0.10 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.10 0.89 6.47 -51.93 -0.34 0.55 16 35 H 0.41 3.04 7.45 -40.82 -0.30 2.74 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.97 7.75 -51.93 -0.40 0.56 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.04 0.37 7.18 -51.93 -0.37 0.00 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.35 5.45 8.43 -39.29 -0.33 5.12 16 44 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.39 9.45 7.90 -40.82 -0.32 9.12 16 47 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 400.62 15.07 6.04 6.04 Total: -1.00 -33.97 400.62 -6.86 -40.83 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -7.08 Total: 12.09 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: -0.62 Total: 9.38 kcal Atomic # 7 Polarization: -60.05 SS G_CDS: -0.38 Total: -60.43 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: 0.21 Total: -23.84 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.97 -6.86 -40.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482087714.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.111 kcal (2) G-P(sol) polarization free energy of solvation -33.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds