Wall clock time and date at job start Tue Mar 31 2020 21:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30617 * 125.42024 * 2 1 4 4 C 1.33694 * 108.98935 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.26881 * 180.02562 * 4 3 2 6 6 C 1.36335 * 107.45750 * 0.02562 * 4 3 2 7 7 C 1.46726 * 126.64642 * 179.97438 * 6 4 3 8 8 O 1.21681 * 119.99751 * 0.02562 * 7 6 4 9 9 N 1.34773 * 119.99932 * 180.02562 * 7 6 4 10 10 C 1.46496 * 119.99934 * 180.02562 * 9 7 6 11 11 C 1.52994 * 109.47355 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.47392 * 54.99840 * 11 10 9 13 13 C 1.53003 * 109.46945 * 294.99481 * 11 10 9 14 14 C 1.53006 * 109.47452 * 174.99751 * 11 10 9 15 15 N 1.46898 * 109.47138 * 184.99841 * 14 11 10 16 16 C 1.46906 * 110.99888 * 180.02562 * 15 14 11 17 17 C 1.50699 * 109.47140 * 179.97438 * 16 15 14 18 18 O 1.21289 * 119.99678 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99614 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99518 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00466 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00085 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99807 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00303 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46922 * 90.00327 * 24 22 20 26 26 H 1.48500 * 109.47032 * 210.00074 * 24 22 20 27 27 H 1.48489 * 109.47076 * 330.00276 * 24 22 20 28 28 O 1.33660 * 125.42014 * 180.29169 * 2 1 3 29 29 H 1.08996 * 109.46912 * 90.02217 * 1 2 3 30 30 H 1.09003 * 109.46909 * 210.01916 * 1 2 3 31 31 H 1.08999 * 109.46938 * 330.02515 * 1 2 3 32 32 H 1.09000 * 109.47212 * 269.97190 * 5 4 3 33 33 H 1.09001 * 109.47350 * 29.97197 * 5 4 3 34 34 H 1.09002 * 109.47310 * 149.97729 * 5 4 3 35 35 H 0.97001 * 120.00253 * 0.02562 * 9 7 6 36 36 H 1.08997 * 109.47613 * 59.99832 * 10 9 7 37 37 H 1.09003 * 109.47151 * 300.00236 * 10 9 7 38 38 H 1.08999 * 109.47096 * 180.02562 * 13 11 10 39 39 H 1.08996 * 109.47132 * 299.99905 * 13 11 10 40 40 H 1.09000 * 109.46878 * 60.00403 * 13 11 10 41 41 H 1.08997 * 109.46770 * 64.99788 * 14 11 10 42 42 H 1.08995 * 109.47019 * 305.00001 * 14 11 10 43 43 H 1.00901 * 111.00121 * 56.04666 * 15 14 11 44 44 H 1.09004 * 109.47040 * 299.99934 * 16 15 14 45 45 H 1.09000 * 109.47033 * 59.99886 * 16 15 14 46 46 H 0.96996 * 120.00269 * 359.97438 * 19 17 16 47 47 H 0.97002 * 120.00022 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2641 1.0644 0.0000 4 6 3.5464 0.6863 -0.0006 5 6 4.7452 1.5995 -0.0002 6 6 3.5709 -0.6769 -0.0015 7 6 4.7636 -1.5314 -0.0029 8 8 5.8719 -1.0291 -0.0029 9 7 4.6316 -2.8727 -0.0043 10 6 5.8225 -3.7259 -0.0051 11 6 5.3970 -5.1955 -0.0072 12 1 4.7300 -5.3794 -0.8494 13 6 4.6693 -5.5176 1.2996 14 6 6.6355 -6.0849 -0.1339 15 7 6.2199 -7.4885 -0.2562 16 6 7.3857 -8.3739 -0.3795 17 6 6.9210 -9.8022 -0.5021 18 8 5.7354 -10.0574 -0.4886 19 7 7.8230 -10.7959 -0.6267 20 6 7.4002 -12.0952 -0.7387 21 1 6.3445 -12.3226 -0.7267 22 6 8.3300 -13.1197 -0.8677 23 7 9.6146 -12.8431 -0.8828 24 14 7.7540 -14.8902 -1.0196 25 1 7.5562 -15.2251 -2.4527 26 1 8.7768 -15.7952 -0.4364 27 1 6.4714 -15.0577 -0.2905 28 8 2.2817 -1.0892 -0.0055 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5141 31 1 -0.3633 0.8902 0.5134 32 1 5.0343 1.8200 -1.0278 33 1 4.4949 2.5275 0.5139 34 1 5.5736 1.1116 0.5134 35 1 3.7481 -3.2731 -0.0047 36 1 6.4171 -3.5207 0.8851 37 1 6.4171 -3.5189 -0.8948 38 1 4.3666 -6.5647 1.2983 39 1 5.3364 -5.3337 2.1418 40 1 3.7870 -4.8840 1.3898 41 1 7.2598 -5.9667 0.7518 42 1 7.2019 -5.7952 -1.0189 43 1 5.5879 -7.6121 -1.0330 44 1 7.9577 -8.1002 -1.2661 45 1 8.0148 -8.2715 0.5047 46 1 8.7712 -10.5917 -0.6378 47 1 10.2637 -13.5583 -0.9725 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482087714.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:04 Heat of formation + Delta-G solvation = -91.238907 kcal Electronic energy + Delta-G solvation = -27818.388204 eV Core-core repulsion = 23615.240665 eV Total energy + Delta-G solvation = -4203.147539 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.56412 -40.81895 -40.15258 -38.34379 -36.63066 -36.13350 -35.64413 -33.90226 -33.42214 -33.12930 -30.31902 -29.21885 -28.67125 -27.31497 -26.41856 -24.53462 -23.13601 -22.80609 -21.82934 -21.47946 -20.95742 -19.90949 -19.26502 -18.20496 -17.83457 -17.24587 -17.01835 -16.83267 -16.57971 -16.35225 -16.02225 -15.61793 -15.43054 -15.31003 -15.13415 -14.76652 -14.46944 -14.30488 -14.09298 -13.95306 -13.86536 -13.56834 -13.49492 -13.41544 -13.17056 -13.16672 -13.02220 -12.84214 -12.41640 -12.12656 -12.09718 -12.05266 -12.03428 -11.99176 -11.74312 -11.50114 -11.32871 -10.39393 -10.33906 -10.01129 -9.85015 -9.29050 -8.46411 -5.95243 -0.34754 1.24988 1.25650 1.38359 1.42231 1.54987 1.88814 2.00497 2.06101 2.29753 2.85454 2.95170 3.21048 3.52342 3.58041 3.58978 3.84260 3.94515 4.03695 4.25561 4.29708 4.33829 4.47476 4.49150 4.58634 4.59456 4.61106 4.61564 4.64637 4.72895 4.73853 4.82439 4.85727 4.94210 5.04728 5.06881 5.14942 5.27762 5.33733 5.41186 5.50612 5.89020 6.10616 6.17833 6.42533 6.49217 6.60465 6.86453 7.12918 7.56926 8.12034 8.70903 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.029325 B = 0.001493 C = 0.001434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.591683 B =18749.006861 C =19518.914395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.232 3.768 3 N -0.519 5.519 4 C 0.075 3.925 5 C -0.079 4.079 6 C -0.144 4.144 7 C 0.609 3.391 8 O -0.542 6.542 9 N -0.704 5.704 10 C 0.130 3.870 11 C -0.088 4.088 12 H 0.083 0.917 13 C -0.137 4.137 14 C 0.067 3.933 15 N -0.678 5.678 16 C 0.065 3.935 17 C 0.438 3.562 18 O -0.623 6.623 19 N -0.574 5.574 20 C -0.335 4.335 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.271 1.271 26 H -0.271 1.271 27 H -0.273 1.273 28 O -0.191 6.191 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.414 0.586 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.044 0.956 43 H 0.344 0.656 44 H 0.067 0.933 45 H 0.103 0.897 46 H 0.396 0.604 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.033 27.861 1.576 30.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.027 3.973 3 N -0.250 5.250 4 C -0.049 4.049 5 C -0.136 4.136 6 C -0.198 4.198 7 C 0.395 3.605 8 O -0.422 6.422 9 N -0.355 5.355 10 C 0.007 3.993 11 C -0.107 4.107 12 H 0.101 0.899 13 C -0.195 4.195 14 C -0.062 4.062 15 N -0.310 5.310 16 C -0.067 4.067 17 C 0.225 3.775 18 O -0.509 6.509 19 N -0.211 5.211 20 C -0.465 4.465 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.196 1.196 26 H -0.196 1.196 27 H -0.198 1.198 28 O -0.079 6.079 29 H 0.136 0.864 30 H 0.132 0.868 31 H 0.136 0.864 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.251 0.749 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.062 0.938 43 H 0.163 0.837 44 H 0.084 0.916 45 H 0.121 0.879 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.161 28.332 2.254 31.321 hybrid contribution 0.593 -1.628 -0.987 1.993 sum -12.569 26.705 1.267 29.542 Atomic orbital electron populations 1.20763 0.77131 1.07260 1.06879 1.27683 0.98251 0.77796 0.93550 1.70416 1.01690 1.30964 1.21886 1.22441 0.94215 0.91718 0.96539 1.20420 0.91389 0.97583 1.04242 1.22744 0.82828 0.95176 1.19082 1.16327 0.85266 0.82017 0.76867 1.90850 1.24683 1.74416 1.52218 1.45815 1.11581 1.04704 1.73374 1.21423 0.86537 0.88333 1.03021 1.21212 0.97494 0.91920 1.00115 0.89909 1.21715 0.99853 1.01858 0.96042 1.21961 0.96366 0.86161 1.01729 1.60022 1.15410 1.04763 1.50844 1.21525 0.93522 0.88865 1.02828 1.20902 0.86227 0.88261 0.82093 1.90485 1.18393 1.85144 1.56914 1.41941 1.08867 1.05851 1.64458 1.19678 0.94069 0.83428 1.49297 0.90286 1.26040 0.94903 1.03995 0.96320 1.69675 1.01036 1.35342 1.50058 0.84922 0.77942 0.76764 0.78671 1.19615 1.19594 1.19801 1.84442 1.15736 1.37751 1.69937 0.86378 0.86785 0.86421 0.89251 0.89270 0.89441 0.74943 0.90726 0.90790 0.92682 0.92753 0.92252 0.90062 0.93775 0.83714 0.91565 0.87862 0.76981 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.22 10.51 71.24 0.75 0.53 16 2 C 0.23 3.37 8.32 88.29 0.73 4.10 16 3 N -0.52 -10.12 11.26 -291.06 -3.28 -13.40 16 4 C 0.07 1.55 7.16 41.83 0.30 1.85 16 5 C -0.08 -1.35 9.87 71.24 0.70 -0.65 16 6 C -0.14 -2.94 7.18 24.05 0.17 -2.77 16 7 C 0.61 12.97 7.79 86.46 0.67 13.64 16 8 O -0.54 -14.08 14.79 -4.29 -0.06 -14.14 16 9 N -0.70 -11.73 5.28 -467.06 -2.47 -14.20 16 10 C 0.13 2.13 5.06 86.38 0.44 2.57 16 11 C -0.09 -1.50 2.57 -10.79 -0.03 -1.52 16 12 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 13 C -0.14 -2.54 8.95 71.98 0.64 -1.90 16 14 C 0.07 1.37 5.07 86.31 0.44 1.81 16 15 N -0.68 -19.73 5.58 -517.92 -2.89 -22.62 16 16 C 0.07 2.14 6.17 85.56 0.53 2.67 16 17 C 0.44 20.51 7.82 87.66 0.69 21.19 16 18 O -0.62 -34.03 15.78 -3.06 -0.05 -34.08 16 19 N -0.57 -29.26 5.29 -306.99 -1.62 -30.89 16 20 C -0.34 -18.99 9.68 84.04 0.81 -18.18 16 21 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 22 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 23 N -0.92 -49.51 13.05 21.66 0.28 -49.22 16 24 Si 0.99 42.76 29.55 68.60 2.03 44.78 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 26 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 27 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 28 O -0.19 -3.26 10.57 -7.10 -0.08 -3.33 16 29 H 0.12 0.05 8.14 -2.39 -0.02 0.03 16 30 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.09 1.65 6.47 -2.39 -0.02 1.63 16 35 H 0.41 5.60 7.45 -92.71 -0.69 4.91 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.05 1.31 7.75 -2.39 -0.02 1.29 16 39 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.06 0.90 7.18 -2.39 -0.02 0.88 16 41 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.34 10.52 8.43 -89.69 -0.76 9.76 16 44 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 45 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 46 H 0.40 19.18 7.90 -92.71 -0.73 18.45 16 47 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -74.27 400.62 -1.97 -76.23 By element: Atomic # 1 Polarization: 38.89 SS G_CDS: -1.15 Total: 37.74 kcal Atomic # 6 Polarization: 15.80 SS G_CDS: 7.32 Total: 23.12 kcal Atomic # 7 Polarization: -120.35 SS G_CDS: -9.97 Total: -130.32 kcal Atomic # 8 Polarization: -51.36 SS G_CDS: -0.19 Total: -51.55 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -74.27 -1.97 -76.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482087714.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.006 kcal (2) G-P(sol) polarization free energy of solvation -74.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds