Wall clock time and date at job start Tue Mar 31 2020 22:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50694 * 109.47255 * 2 1 4 4 O 1.34256 * 126.53143 * 270.02518 * 3 2 1 5 5 C 1.34046 * 108.23224 * 179.97438 * 4 3 2 6 6 N 1.29935 * 109.24310 * 0.02562 * 5 4 3 7 7 C 1.36073 * 108.47624 * 359.75139 * 6 5 4 8 8 C 1.47416 * 126.44832 * 180.28520 * 7 6 5 9 9 O 1.21616 * 119.99826 * 175.18833 * 8 7 6 10 10 N 1.34779 * 120.00339 * 355.19257 * 8 7 6 11 11 C 1.46498 * 119.99825 * 2.53593 * 10 8 7 12 12 C 1.46497 * 119.99943 * 182.53964 * 10 8 7 13 13 H 1.09003 * 109.47266 * 359.97438 * 12 10 8 14 14 C 1.52997 * 109.47164 * 119.99716 * 12 10 8 15 15 C 1.53001 * 109.46931 * 239.99725 * 12 10 8 16 16 N 1.46907 * 109.47227 * 55.00222 * 15 12 10 17 17 C 1.46899 * 110.99952 * 180.02562 * 16 15 12 18 18 C 1.50699 * 109.46805 * 179.97438 * 17 16 15 19 19 O 1.21288 * 120.00366 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99733 * 179.97438 * 18 17 16 21 21 C 1.37103 * 119.99729 * 179.97438 * 20 18 17 22 22 H 1.07992 * 120.00002 * 0.02562 * 21 20 18 23 23 C 1.38947 * 119.99845 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00182 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 120.00183 * 0.02562 * 23 21 20 26 26 H 1.48504 * 109.47248 * 89.99629 * 25 23 21 27 27 H 1.48498 * 109.47303 * 209.99848 * 25 23 21 28 28 H 1.48502 * 109.46975 * 329.99902 * 25 23 21 29 29 H 1.09000 * 109.47712 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47300 * 300.00207 * 1 2 3 31 31 H 1.09003 * 109.47394 * 59.99543 * 1 2 3 32 32 H 1.09008 * 109.46781 * 240.00231 * 2 1 3 33 33 H 1.08997 * 109.46996 * 120.00371 * 2 1 3 34 34 H 1.08003 * 125.38322 * 180.02562 * 5 4 3 35 35 H 1.09004 * 109.47022 * 83.88570 * 11 10 8 36 36 H 1.08999 * 109.47152 * 203.88502 * 11 10 8 37 37 H 1.09002 * 109.46941 * 323.88637 * 11 10 8 38 38 H 1.09006 * 109.47111 * 179.97438 * 14 12 10 39 39 H 1.08992 * 109.47456 * 299.99711 * 14 12 10 40 40 H 1.09003 * 109.47058 * 59.99837 * 14 12 10 41 41 H 1.08996 * 109.47194 * 175.00255 * 15 12 10 42 42 H 1.09001 * 109.47269 * 294.99955 * 15 12 10 43 43 H 1.00903 * 110.99715 * 303.95458 * 16 15 12 44 44 H 1.09001 * 109.47027 * 299.99926 * 17 16 15 45 45 H 1.08997 * 109.47030 * 59.99855 * 17 16 15 46 46 H 0.97001 * 120.00245 * 359.97438 * 20 18 17 47 47 H 0.96999 * 120.00547 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 2.2983 2.1744 -1.0788 5 6 2.7222 3.3744 -0.6579 6 7 2.7300 3.3943 0.6413 7 6 2.2978 2.1860 1.0937 8 6 2.1475 1.7813 2.5032 9 8 1.6668 0.6981 2.7769 10 7 2.5426 2.6116 3.4886 11 6 3.0699 3.9385 3.1610 12 6 2.4448 2.1871 4.8874 13 1 2.0326 1.1790 4.9332 14 6 3.8367 2.1988 5.5224 15 6 1.5287 3.1472 5.6488 16 7 0.2290 3.2270 4.9686 17 6 -0.6785 4.1425 5.6730 18 6 -1.9981 4.1987 4.9473 19 8 -2.1662 3.5404 3.9425 20 7 -2.9918 4.9796 5.4154 21 6 -4.1922 5.0311 4.7549 22 1 -4.3415 4.4457 3.8598 23 6 -5.2168 5.8358 5.2377 24 7 -6.3675 5.8849 4.6050 25 14 -4.9587 6.8480 6.7864 26 1 -4.4185 8.1823 6.4214 27 1 -6.2554 7.0148 7.4906 28 1 -3.9970 6.1517 7.6783 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.0115 4.1951 -1.2976 35 1 2.2424 4.6348 3.0248 36 1 3.7078 4.2867 3.9733 37 1 3.6517 3.8812 2.2410 38 1 3.7638 1.8834 6.5633 39 1 4.4893 1.5148 4.9800 40 1 4.2484 3.2070 5.4766 41 1 1.3847 2.7824 6.6657 42 1 1.9843 4.1370 5.6790 43 1 0.3419 3.5011 4.0041 44 1 -0.8378 3.7850 6.6903 45 1 -0.2380 5.1391 5.7029 46 1 -2.8578 5.5052 6.2196 47 1 -7.0827 6.4469 4.9418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482267867.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:44 Heat of formation + Delta-G solvation = -29.520519 kcal Electronic energy + Delta-G solvation = -30131.037023 eV Core-core repulsion = 25930.565794 eV Total energy + Delta-G solvation = -4200.471229 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.62360 -39.96748 -38.40367 -36.93763 -35.24127 -34.51872 -34.15147 -33.74371 -31.76056 -31.55647 -29.31750 -27.71120 -26.92848 -25.19708 -24.68640 -23.72436 -23.02747 -22.15969 -20.81038 -19.52213 -19.24246 -18.28330 -17.82374 -17.00563 -16.83421 -16.33057 -15.88693 -15.60407 -15.26401 -15.04585 -14.80967 -14.58139 -14.17309 -13.97315 -13.78348 -13.62232 -13.28287 -13.20883 -12.89777 -12.75111 -12.67435 -12.51923 -12.36753 -12.22248 -11.85579 -11.74238 -11.69846 -11.58568 -11.40142 -11.17749 -11.15551 -10.95592 -10.56921 -10.56434 -9.94234 -9.93682 -9.53388 -9.12159 -8.69522 -8.47090 -8.14874 -8.04555 -6.27519 -3.78642 0.98177 1.90140 2.37962 2.89057 3.05191 3.08676 3.16814 3.27042 3.79505 3.83523 4.10743 4.14195 4.40739 4.55070 4.81651 4.89844 4.92128 5.07803 5.12186 5.14153 5.15592 5.17791 5.25934 5.40385 5.44432 5.51093 5.56015 5.60692 5.64467 5.67954 5.76836 5.79197 5.84483 5.89705 5.96848 5.98640 6.08422 6.14270 6.27190 6.56869 7.17110 7.19016 7.39127 7.62206 7.65408 8.14502 8.18739 8.64335 8.99176 9.46526 9.88029 10.85824 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011644 B = 0.003046 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.030460 B = 9190.526938 C =10423.026647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.043 4.043 3 C 0.049 3.951 4 O -0.199 6.199 5 C 0.169 3.831 6 N -0.460 5.460 7 C -0.071 4.071 8 C 0.605 3.395 9 O -0.522 6.522 10 N -0.596 5.596 11 C 0.072 3.928 12 C 0.138 3.862 13 H 0.112 0.888 14 C -0.159 4.159 15 C 0.051 3.949 16 N -0.663 5.663 17 C 0.048 3.952 18 C 0.450 3.550 19 O -0.561 6.561 20 N -0.592 5.592 21 C -0.303 4.303 22 H 0.119 0.881 23 C 0.041 3.959 24 N -0.883 5.883 25 Si 0.880 3.120 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.269 1.269 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.253 0.747 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.102 0.898 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.083 0.917 42 H 0.029 0.971 43 H 0.350 0.650 44 H 0.087 0.913 45 H 0.042 0.958 46 H 0.370 0.630 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.706 -4.969 -4.540 25.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.081 4.081 3 C -0.008 4.008 4 O -0.085 6.085 5 C -0.059 4.059 6 N -0.189 5.189 7 C -0.191 4.191 8 C 0.392 3.608 9 O -0.398 6.398 10 N -0.329 5.329 11 C -0.071 4.071 12 C 0.034 3.966 13 H 0.130 0.870 14 C -0.217 4.217 15 C -0.080 4.080 16 N -0.296 5.296 17 C -0.085 4.085 18 C 0.236 3.764 19 O -0.442 6.442 20 N -0.232 5.232 21 C -0.432 4.432 22 H 0.136 0.864 23 C -0.162 4.162 24 N -0.523 5.523 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.132 0.868 34 H 0.269 0.731 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.120 0.880 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.101 0.899 42 H 0.047 0.953 43 H 0.170 0.830 44 H 0.105 0.895 45 H 0.060 0.940 46 H 0.203 0.797 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 24.030 -5.955 -4.430 25.150 hybrid contribution 0.207 1.797 0.555 1.892 sum 24.237 -4.158 -3.875 24.894 Atomic orbital electron populations 1.21730 0.92468 1.03062 1.03199 1.20375 0.97574 0.85170 1.04937 1.23845 0.97918 0.95735 0.83264 1.84368 1.63640 1.24124 1.36359 1.28100 0.99110 0.87110 0.91575 1.70893 1.17527 1.20902 1.09577 1.21431 1.10647 0.91414 0.95560 1.16686 0.77655 0.83950 0.82470 1.90798 1.44140 1.22059 1.82776 1.47582 1.63066 1.16476 1.05753 1.22163 0.99508 0.82894 1.02528 1.21208 0.95049 1.01019 0.79286 0.87036 1.22108 0.96150 1.02304 1.01146 1.22334 0.89599 0.97599 0.98467 1.60008 1.09772 1.53402 1.06436 1.21711 0.93292 0.94656 0.98805 1.19732 0.85415 0.83776 0.87474 1.90577 1.81944 1.45157 1.26571 1.42202 1.13424 1.41591 1.25986 1.19432 0.87394 1.26101 1.10273 0.86358 1.25028 0.95238 0.97797 0.98126 1.69622 1.03596 1.39433 1.39677 0.86667 0.78534 0.80959 0.83202 1.19719 1.20191 1.19475 0.91047 0.90905 0.92642 0.89995 0.86769 0.73133 0.92894 0.91888 0.88028 0.91075 0.92074 0.92278 0.89909 0.95322 0.82975 0.89455 0.94023 0.79742 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.89 37.16 0.37 -1.36 16 2 C -0.04 -0.46 5.87 -27.89 -0.16 -0.63 16 3 C 0.05 0.60 6.69 -35.08 -0.23 0.36 16 4 O -0.20 -2.11 10.73 6.52 0.07 -2.04 16 5 C 0.17 1.49 13.19 51.96 0.69 2.18 16 6 N -0.46 -5.39 7.85 -11.48 -0.09 -5.48 16 7 C -0.07 -0.97 6.67 -83.02 -0.55 -1.52 16 8 C 0.60 9.10 7.67 -12.52 -0.10 9.01 16 9 O -0.52 -8.95 14.20 5.26 0.07 -8.88 16 10 N -0.60 -7.64 1.83 -175.20 -0.32 -7.97 16 11 C 0.07 0.78 8.69 59.85 0.52 1.30 16 12 C 0.14 1.63 2.94 -67.93 -0.20 1.43 16 13 H 0.11 1.57 6.90 -51.93 -0.36 1.22 16 14 C -0.16 -1.35 9.18 37.16 0.34 -1.00 16 15 C 0.05 0.63 5.03 -3.82 -0.02 0.61 16 16 N -0.66 -11.41 6.12 -115.05 -0.70 -12.11 16 17 C 0.05 0.85 6.17 -4.98 -0.03 0.82 16 18 C 0.45 10.78 7.82 -10.99 -0.09 10.70 16 19 O -0.56 -15.95 15.78 5.55 0.09 -15.86 16 20 N -0.59 -14.62 5.09 -10.97 -0.06 -14.68 16 21 C -0.30 -8.83 10.16 -14.93 -0.15 -8.98 16 22 H 0.12 3.94 7.39 -52.49 -0.39 3.55 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 24 N -0.88 -26.29 13.96 55.50 0.77 -25.52 16 25 Si 0.88 19.76 27.74 -169.99 -4.71 15.04 16 26 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 H -0.27 -5.53 6.52 56.52 0.37 -5.16 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.11 1.31 6.61 -51.93 -0.34 0.96 16 34 H 0.25 0.87 8.06 -52.48 -0.42 0.44 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.54 6.44 -51.93 -0.33 0.21 16 37 H 0.10 1.09 5.33 -51.93 -0.28 0.81 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.45 6.67 -51.93 -0.35 0.10 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.03 0.32 7.84 -51.93 -0.41 -0.09 16 43 H 0.35 6.63 7.56 -39.29 -0.30 6.33 16 44 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 45 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.37 8.00 5.76 -40.82 -0.24 7.76 16 47 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 387.79 15.07 5.84 5.84 Total: -1.00 -36.71 387.79 -5.56 -42.27 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: -6.80 Total: 15.42 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: 0.28 Total: 13.96 kcal Atomic # 7 Polarization: -65.35 SS G_CDS: -0.40 Total: -65.75 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: 0.23 Total: -26.77 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.71 Total: 15.04 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.71 -5.56 -42.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482267867.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.746 kcal (2) G-P(sol) polarization free energy of solvation -36.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds