Wall clock time and date at job start Tue Mar 31 2020 21:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30252 * 125.62060 * 2 1 4 4 C 1.34479 * 108.70156 * 179.97438 * 3 2 1 5 5 C 1.34323 * 107.67015 * 0.02562 * 4 3 2 6 6 C 1.50698 * 126.44765 * 180.02562 * 5 4 3 7 7 C 1.50706 * 109.47294 * 89.99293 * 6 5 4 8 8 O 1.21279 * 119.99507 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00020 * 180.02562 * 7 6 5 10 10 C 1.46495 * 119.99828 * 0.02562 * 9 7 6 11 11 C 1.46496 * 119.99544 * 180.02562 * 9 7 6 12 12 H 1.09000 * 109.47627 * 359.97438 * 11 9 7 13 13 C 1.53004 * 109.47197 * 120.00416 * 11 9 7 14 14 C 1.53011 * 109.47082 * 239.99775 * 11 9 7 15 15 N 1.46900 * 109.46686 * 55.00232 * 14 11 9 16 16 C 1.46905 * 110.99623 * 180.02562 * 15 14 11 17 17 C 1.50699 * 109.46918 * 179.97438 * 16 15 14 18 18 O 1.21294 * 120.00232 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00258 * 179.97438 * 17 16 15 20 20 C 1.37092 * 120.00402 * 180.02562 * 19 17 16 21 21 H 1.08005 * 120.00043 * 359.97438 * 20 19 17 22 22 C 1.38947 * 120.00309 * 179.97438 * 20 19 17 23 23 N 1.31409 * 120.00467 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99984 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47471 * 89.99453 * 24 22 20 26 26 H 1.48495 * 109.47433 * 210.00301 * 24 22 20 27 27 H 1.48503 * 109.46969 * 330.00084 * 24 22 20 28 28 O 1.33973 * 125.62007 * 180.28758 * 2 1 3 29 29 H 1.08992 * 109.47407 * 90.02186 * 1 2 3 30 30 H 1.08995 * 109.46884 * 210.02741 * 1 2 3 31 31 H 1.09004 * 109.46655 * 330.02068 * 1 2 3 32 32 H 1.08004 * 126.16812 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.46665 * 329.99674 * 6 5 4 34 34 H 1.09000 * 109.47722 * 210.00006 * 6 5 4 35 35 H 1.08997 * 109.47477 * 90.00366 * 10 9 7 36 36 H 1.09004 * 109.46971 * 209.99938 * 10 9 7 37 37 H 1.08993 * 109.47768 * 330.00002 * 10 9 7 38 38 H 1.09002 * 109.47232 * 179.97438 * 13 11 9 39 39 H 1.09005 * 109.46541 * 299.99232 * 13 11 9 40 40 H 1.09000 * 109.47381 * 59.99177 * 13 11 9 41 41 H 1.08994 * 109.47385 * 175.00057 * 14 11 9 42 42 H 1.09003 * 109.46729 * 295.00330 * 14 11 9 43 43 H 1.00902 * 111.00196 * 56.04644 * 15 14 11 44 44 H 1.08991 * 109.46934 * 300.00045 * 16 15 14 45 45 H 1.09002 * 109.47056 * 60.00310 * 16 15 14 46 46 H 0.97003 * 119.99283 * 359.97438 * 19 17 16 47 47 H 0.96996 * 120.00244 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 0.0006 5 6 3.5698 -0.6757 0.0004 6 6 4.7937 -1.5550 0.0014 7 6 5.2004 -1.8482 1.4225 8 8 4.5593 -1.3888 2.3438 9 7 6.2766 -2.6210 1.6697 10 6 7.0513 -3.1754 0.5568 11 6 6.6716 -2.9064 3.0512 12 1 5.9823 -2.4121 3.7358 13 6 6.6336 -4.4171 3.2908 14 6 8.0904 -2.3873 3.2936 15 7 8.1554 -0.9609 2.9487 16 6 9.5062 -0.4271 3.1688 17 6 9.5341 1.0349 2.8044 18 8 8.5277 1.5789 2.4014 19 7 10.6772 1.7384 2.9272 20 6 10.7025 3.0685 2.5962 21 1 9.8065 3.5526 2.2365 22 6 11.8808 3.7938 2.7233 23 7 11.9052 5.0687 2.4055 24 14 13.4303 2.9567 3.3460 25 1 14.1885 2.4005 2.1966 26 1 14.2736 3.9465 4.0630 27 1 13.0604 1.8575 4.2734 28 8 2.2873 -1.0890 -0.0055 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 4.4158 1.3161 0.0003 33 1 5.6085 -1.0441 -0.5117 34 1 4.5700 -2.4897 -0.5128 35 1 7.8427 -2.4781 0.2819 36 1 7.4928 -4.1252 0.8589 37 1 6.3951 -3.3356 -0.2986 38 1 6.9279 -4.6296 4.3186 39 1 5.6228 -4.7869 3.1181 40 1 7.3231 -4.9111 2.6062 41 1 8.3512 -2.5194 4.3437 42 1 8.7920 -2.9438 2.6722 43 1 7.4686 -0.4322 3.4654 44 1 9.7772 -0.5457 4.2178 45 1 10.2173 -0.9700 2.5462 46 1 11.4818 1.3036 3.2506 47 1 12.7276 5.5751 2.4946 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482293741.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:13 Heat of formation + Delta-G solvation = -34.980658 kcal Electronic energy + Delta-G solvation = -29422.535025 eV Core-core repulsion = 25221.827027 eV Total energy + Delta-G solvation = -4200.707999 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.30435 -40.09510 -38.46269 -36.93620 -34.79131 -34.71454 -33.87125 -33.30890 -31.91169 -31.61920 -30.22827 -27.78433 -27.03448 -26.14020 -24.98044 -23.16808 -22.54964 -21.76738 -20.85215 -19.46814 -19.14446 -18.29290 -17.63145 -17.01139 -16.65706 -16.34652 -15.82436 -15.73358 -15.33807 -14.92099 -14.56721 -14.45118 -14.17856 -14.01830 -13.67075 -13.51100 -13.32461 -13.25360 -13.12878 -12.94633 -12.79416 -12.62792 -12.50219 -12.43994 -12.20496 -12.16705 -12.04243 -11.69288 -11.58816 -11.20556 -11.16191 -10.98615 -10.60028 -10.49808 -9.97123 -9.89667 -9.56767 -8.74419 -8.65372 -8.53638 -8.18899 -8.13392 -6.30288 -3.81738 1.40219 2.48345 2.64659 2.71925 3.01720 3.01795 3.05981 3.14422 3.74842 4.01703 4.03602 4.10547 4.44065 4.58924 4.75396 4.79469 4.82945 4.93080 4.95830 4.99773 5.11636 5.14993 5.21549 5.22240 5.32257 5.34550 5.35769 5.43096 5.44918 5.46854 5.61432 5.68268 5.78882 5.80788 5.84179 5.91123 5.94213 5.97716 6.40300 6.43887 7.08125 7.29201 7.55353 7.59116 7.75465 8.14904 8.15527 8.60610 8.96040 9.43143 9.83796 10.82932 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011122 B = 0.002761 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.833634 B =10138.056297 C =12153.002044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.183 3.817 3 N -0.481 5.481 4 C -0.015 4.015 5 C -0.032 4.032 6 C -0.051 4.051 7 C 0.524 3.476 8 O -0.532 6.532 9 N -0.592 5.592 10 C 0.076 3.924 11 C 0.138 3.862 12 H 0.100 0.900 13 C -0.159 4.159 14 C 0.048 3.952 15 N -0.663 5.663 16 C 0.049 3.951 17 C 0.449 3.551 18 O -0.561 6.561 19 N -0.592 5.592 20 C -0.304 4.304 21 H 0.119 0.881 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 O -0.201 6.201 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.187 0.813 33 H 0.130 0.870 34 H 0.109 0.891 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.037 0.963 42 H 0.074 0.926 43 H 0.353 0.647 44 H 0.043 0.957 45 H 0.085 0.915 46 H 0.370 0.630 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.621 -22.827 -3.762 26.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.024 4.024 3 N -0.211 5.211 4 C -0.154 4.154 5 C -0.085 4.085 6 C -0.091 4.091 7 C 0.312 3.688 8 O -0.408 6.408 9 N -0.326 5.326 10 C -0.068 4.068 11 C 0.034 3.966 12 H 0.118 0.882 13 C -0.217 4.217 14 C -0.082 4.082 15 N -0.296 5.296 16 C -0.084 4.084 17 C 0.235 3.765 18 O -0.443 6.443 19 N -0.231 5.231 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 O -0.089 6.089 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.118 0.882 32 H 0.204 0.796 33 H 0.148 0.852 34 H 0.127 0.873 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.056 0.944 42 H 0.092 0.908 43 H 0.173 0.827 44 H 0.061 0.939 45 H 0.103 0.897 46 H 0.202 0.798 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.679 -21.541 -4.235 25.866 hybrid contribution 2.067 -1.101 1.446 2.753 sum -11.612 -22.642 -2.789 25.599 Atomic orbital electron populations 1.20212 0.81505 1.05032 1.04380 1.26223 0.96352 0.78774 1.01017 1.70449 1.02197 1.30225 1.18192 1.23127 0.95116 0.92946 1.04193 1.22447 0.82928 0.94895 1.08233 1.20071 0.92415 1.00143 0.96468 1.20164 0.80140 0.77899 0.90644 1.90727 1.53460 1.50559 1.46085 1.47464 1.28151 1.50311 1.06626 1.21807 0.96758 0.99362 0.88831 1.21085 0.96274 0.95454 0.83747 0.88192 1.22095 1.02456 0.94894 1.02279 1.22360 0.96505 0.90530 0.98846 1.60012 1.05099 1.01423 1.63069 1.21697 0.91893 0.95421 0.99375 1.19714 0.84464 0.87593 0.84729 1.90583 1.33438 1.70952 1.49308 1.42209 1.09909 1.10826 1.60185 1.19430 0.99663 0.82991 1.41199 0.86296 1.25039 0.97894 0.95515 0.97760 1.69620 1.28213 1.06846 1.47476 0.86669 0.83734 0.79553 0.79387 1.19629 1.20203 1.19594 1.84307 1.16562 1.37825 1.70182 0.89140 0.89564 0.88151 0.79627 0.85181 0.87327 0.91393 0.91111 0.91396 0.91305 0.92052 0.92052 0.94449 0.90793 0.82748 0.93933 0.89654 0.79768 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.41 10.51 36.01 0.38 -0.03 16 2 C 0.18 2.40 8.34 -12.95 -0.11 2.29 16 3 N -0.48 -7.59 11.29 -11.10 -0.13 -7.72 16 4 C -0.02 -0.23 11.80 -17.77 -0.21 -0.44 16 5 C -0.03 -0.45 5.88 -35.69 -0.21 -0.66 16 6 C -0.05 -0.54 4.80 -29.03 -0.14 -0.68 16 7 C 0.52 7.03 7.67 -10.98 -0.08 6.95 16 8 O -0.53 -9.50 15.36 5.56 0.09 -9.41 16 9 N -0.59 -6.32 2.48 -173.93 -0.43 -6.75 16 10 C 0.08 0.55 9.40 59.84 0.56 1.11 16 11 C 0.14 1.44 2.88 -67.93 -0.20 1.25 16 12 H 0.10 1.30 6.90 -51.93 -0.36 0.94 16 13 C -0.16 -1.17 9.17 37.16 0.34 -0.83 16 14 C 0.05 0.52 4.98 -3.82 -0.02 0.50 16 15 N -0.66 -10.09 5.85 -115.05 -0.67 -10.76 16 16 C 0.05 0.79 6.17 -4.97 -0.03 0.76 16 17 C 0.45 10.20 7.82 -10.99 -0.09 10.12 16 18 O -0.56 -15.21 15.78 5.54 0.09 -15.13 16 19 N -0.59 -14.12 5.09 -10.96 -0.06 -14.18 16 20 C -0.30 -8.67 10.16 -14.94 -0.15 -8.82 16 21 H 0.12 3.89 7.39 -52.48 -0.39 3.50 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.96 13.96 55.50 0.77 -25.18 16 24 Si 0.88 19.40 27.74 -169.99 -4.71 14.69 16 25 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 28 O -0.20 -2.79 10.78 5.35 0.06 -2.73 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.19 2.76 8.06 -52.48 -0.42 2.34 16 33 H 0.13 1.19 8.11 -51.93 -0.42 0.77 16 34 H 0.11 0.81 7.40 -51.93 -0.38 0.42 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.39 6.43 -51.93 -0.33 0.06 16 37 H 0.07 0.35 6.44 -51.93 -0.33 0.02 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.37 6.66 -51.93 -0.35 0.02 16 41 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.70 7.84 -51.93 -0.41 0.29 16 43 H 0.35 6.19 8.43 -39.29 -0.33 5.86 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.37 7.72 5.76 -40.82 -0.24 7.49 16 47 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 395.15 15.07 5.95 5.95 Total: -1.00 -38.49 395.15 -6.02 -44.52 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -6.93 Total: 14.16 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: -0.05 Total: 12.55 kcal Atomic # 7 Polarization: -64.08 SS G_CDS: -0.51 Total: -64.60 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: 0.23 Total: -27.27 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.71 Total: 14.69 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -38.49 -6.02 -44.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482293741.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.537 kcal (2) G-P(sol) polarization free energy of solvation -38.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds