Wall clock time and date at job start Tue Mar 31 2020 21:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30252 * 125.62060 * 2 1 4 4 C 1.34479 * 108.70156 * 179.97438 * 3 2 1 5 5 C 1.34323 * 107.67015 * 0.02562 * 4 3 2 6 6 C 1.50698 * 126.44765 * 180.02562 * 5 4 3 7 7 C 1.50706 * 109.47294 * 89.99293 * 6 5 4 8 8 O 1.21279 * 119.99507 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00020 * 180.02562 * 7 6 5 10 10 C 1.46495 * 119.99828 * 0.02562 * 9 7 6 11 11 C 1.46496 * 119.99544 * 180.02562 * 9 7 6 12 12 H 1.09000 * 109.47627 * 359.97438 * 11 9 7 13 13 C 1.53004 * 109.47197 * 120.00416 * 11 9 7 14 14 C 1.53011 * 109.47082 * 239.99775 * 11 9 7 15 15 N 1.46900 * 109.46686 * 55.00232 * 14 11 9 16 16 C 1.46905 * 110.99623 * 180.02562 * 15 14 11 17 17 C 1.50699 * 109.46918 * 179.97438 * 16 15 14 18 18 O 1.21294 * 120.00232 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00258 * 179.97438 * 17 16 15 20 20 C 1.37092 * 120.00402 * 180.02562 * 19 17 16 21 21 H 1.08005 * 120.00043 * 359.97438 * 20 19 17 22 22 C 1.38947 * 120.00309 * 179.97438 * 20 19 17 23 23 N 1.31409 * 120.00467 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99984 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47471 * 89.99453 * 24 22 20 26 26 H 1.48495 * 109.47433 * 210.00301 * 24 22 20 27 27 H 1.48503 * 109.46969 * 330.00084 * 24 22 20 28 28 O 1.33973 * 125.62007 * 180.28758 * 2 1 3 29 29 H 1.08992 * 109.47407 * 90.02186 * 1 2 3 30 30 H 1.08995 * 109.46884 * 210.02741 * 1 2 3 31 31 H 1.09004 * 109.46655 * 330.02068 * 1 2 3 32 32 H 1.08004 * 126.16812 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.46665 * 329.99674 * 6 5 4 34 34 H 1.09000 * 109.47722 * 210.00006 * 6 5 4 35 35 H 1.08997 * 109.47477 * 90.00366 * 10 9 7 36 36 H 1.09004 * 109.46971 * 209.99938 * 10 9 7 37 37 H 1.08993 * 109.47768 * 330.00002 * 10 9 7 38 38 H 1.09002 * 109.47232 * 179.97438 * 13 11 9 39 39 H 1.09005 * 109.46541 * 299.99232 * 13 11 9 40 40 H 1.09000 * 109.47381 * 59.99177 * 13 11 9 41 41 H 1.08994 * 109.47385 * 175.00057 * 14 11 9 42 42 H 1.09003 * 109.46729 * 295.00330 * 14 11 9 43 43 H 1.00902 * 111.00196 * 56.04644 * 15 14 11 44 44 H 1.08991 * 109.46934 * 300.00045 * 16 15 14 45 45 H 1.09002 * 109.47056 * 60.00310 * 16 15 14 46 46 H 0.97003 * 119.99283 * 359.97438 * 19 17 16 47 47 H 0.96996 * 120.00244 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 0.0006 5 6 3.5698 -0.6757 0.0004 6 6 4.7937 -1.5550 0.0014 7 6 5.2004 -1.8482 1.4225 8 8 4.5593 -1.3888 2.3438 9 7 6.2766 -2.6210 1.6697 10 6 7.0513 -3.1754 0.5568 11 6 6.6716 -2.9064 3.0512 12 1 5.9823 -2.4121 3.7358 13 6 6.6336 -4.4171 3.2908 14 6 8.0904 -2.3873 3.2936 15 7 8.1554 -0.9609 2.9487 16 6 9.5062 -0.4271 3.1688 17 6 9.5341 1.0349 2.8044 18 8 8.5277 1.5789 2.4014 19 7 10.6772 1.7384 2.9272 20 6 10.7025 3.0685 2.5962 21 1 9.8065 3.5526 2.2365 22 6 11.8808 3.7938 2.7233 23 7 11.9052 5.0687 2.4055 24 14 13.4303 2.9567 3.3460 25 1 14.1885 2.4005 2.1966 26 1 14.2736 3.9465 4.0630 27 1 13.0604 1.8575 4.2734 28 8 2.2873 -1.0890 -0.0055 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 4.4158 1.3161 0.0003 33 1 5.6085 -1.0441 -0.5117 34 1 4.5700 -2.4897 -0.5128 35 1 7.8427 -2.4781 0.2819 36 1 7.4928 -4.1252 0.8589 37 1 6.3951 -3.3356 -0.2986 38 1 6.9279 -4.6296 4.3186 39 1 5.6228 -4.7869 3.1181 40 1 7.3231 -4.9111 2.6062 41 1 8.3512 -2.5194 4.3437 42 1 8.7920 -2.9438 2.6722 43 1 7.4686 -0.4322 3.4654 44 1 9.7772 -0.5457 4.2178 45 1 10.2173 -0.9700 2.5462 46 1 11.4818 1.3036 3.2506 47 1 12.7276 5.5751 2.4946 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482293741.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:12 Heat of formation + Delta-G solvation = -68.607972 kcal Electronic energy + Delta-G solvation = -29423.993215 eV Core-core repulsion = 25221.827027 eV Total energy + Delta-G solvation = -4202.166188 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.36574 -41.05073 -40.26803 -37.98815 -36.20096 -35.81379 -35.59577 -34.29363 -33.75689 -32.73114 -31.00730 -29.09571 -27.73802 -27.08055 -26.56028 -24.49624 -23.63099 -22.70544 -21.84109 -21.29643 -20.39571 -19.94496 -18.57791 -18.06236 -17.84648 -17.61535 -17.13500 -16.78187 -16.64874 -16.46342 -15.74284 -15.59631 -15.33743 -15.12572 -14.97310 -14.72497 -14.48109 -14.35862 -14.19618 -14.01875 -13.84167 -13.81587 -13.39749 -13.25912 -13.22051 -13.13473 -12.91488 -12.87388 -12.74879 -12.50211 -12.42128 -12.33115 -11.98871 -11.75397 -11.60428 -11.52171 -10.95395 -10.45935 -10.26005 -9.70900 -9.56013 -9.30626 -8.42206 -6.03594 0.36308 1.28861 1.35040 1.43978 1.52275 1.63377 1.66962 1.95441 2.16730 2.22341 2.72346 3.12700 3.13787 3.37751 3.56055 3.69266 3.90733 3.99195 4.07966 4.13171 4.23722 4.30915 4.34982 4.39175 4.45457 4.53599 4.62549 4.63613 4.65439 4.67301 4.73668 4.79496 4.84687 4.95003 5.00609 5.08154 5.12887 5.31239 5.36329 5.51540 5.65466 5.89498 6.05306 6.27167 6.42884 6.58876 6.67805 6.87464 7.20184 7.38805 7.96680 8.75800 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011122 B = 0.002761 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.833634 B =10138.056297 C =12153.002044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.185 3.815 3 N -0.521 5.521 4 C -0.052 4.052 5 C -0.030 4.030 6 C -0.046 4.046 7 C 0.514 3.486 8 O -0.591 6.591 9 N -0.586 5.586 10 C 0.068 3.932 11 C 0.134 3.866 12 H 0.065 0.935 13 C -0.147 4.147 14 C 0.052 3.948 15 N -0.680 5.680 16 C 0.065 3.935 17 C 0.446 3.554 18 O -0.615 6.615 19 N -0.591 5.591 20 C -0.329 4.329 21 H 0.051 0.949 22 C -0.017 4.017 23 N -0.936 5.936 24 Si 0.968 3.032 25 H -0.254 1.254 26 H -0.276 1.276 27 H -0.231 1.231 28 O -0.205 6.205 29 H 0.117 0.883 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.176 0.824 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.057 0.943 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.054 0.946 40 H 0.084 0.916 41 H 0.054 0.946 42 H 0.100 0.900 43 H 0.333 0.667 44 H 0.073 0.927 45 H 0.121 0.879 46 H 0.390 0.610 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.559 -27.638 -3.461 29.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.022 4.022 3 N -0.251 5.251 4 C -0.189 4.189 5 C -0.083 4.083 6 C -0.086 4.086 7 C 0.302 3.698 8 O -0.471 6.471 9 N -0.318 5.318 10 C -0.074 4.074 11 C 0.030 3.970 12 H 0.083 0.917 13 C -0.206 4.206 14 C -0.077 4.077 15 N -0.311 5.311 16 C -0.067 4.067 17 C 0.234 3.766 18 O -0.500 6.500 19 N -0.233 5.233 20 C -0.458 4.458 21 H 0.069 0.931 22 C -0.216 4.216 23 N -0.577 5.577 24 Si 0.788 3.212 25 H -0.178 1.178 26 H -0.201 1.201 27 H -0.154 1.154 28 O -0.093 6.093 29 H 0.135 0.865 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.193 0.807 33 H 0.162 0.838 34 H 0.166 0.834 35 H 0.076 0.924 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.103 0.897 41 H 0.072 0.928 42 H 0.118 0.882 43 H 0.151 0.849 44 H 0.090 0.910 45 H 0.139 0.861 46 H 0.226 0.774 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.575 -26.417 -3.950 29.111 hybrid contribution 1.287 0.437 1.312 1.889 sum -10.289 -25.980 -2.638 28.068 Atomic orbital electron populations 1.20547 0.77715 1.06330 1.06443 1.27360 0.98134 0.77982 0.98684 1.70403 1.02650 1.31843 1.20204 1.23170 0.95226 0.94087 1.06458 1.22898 0.83881 0.94765 1.06741 1.20234 0.91359 1.01563 0.95414 1.20639 0.80494 0.77651 0.91001 1.90700 1.55603 1.53028 1.47815 1.47612 1.27287 1.49046 1.07805 1.22091 0.96739 0.99993 0.88571 1.21150 0.95294 0.97418 0.83101 0.91691 1.22014 1.02831 0.92028 1.03688 1.22478 0.97131 0.87703 1.00381 1.60044 1.04042 1.03546 1.63485 1.21629 0.93320 0.90156 1.01628 1.21089 0.83015 0.90254 0.82216 1.90570 1.35404 1.72921 1.51066 1.42020 1.11341 1.09146 1.60764 1.18980 0.98163 0.85500 1.43188 0.93093 1.26170 1.02268 0.96046 0.97094 1.69814 1.29937 1.09254 1.48681 0.85322 0.76954 0.79206 0.79731 1.17818 1.20135 1.15423 1.84325 1.16614 1.38092 1.70310 0.86514 0.87410 0.87590 0.80712 0.83841 0.83357 0.92387 0.88395 0.88949 0.90104 0.92647 0.89706 0.92810 0.88162 0.84941 0.90962 0.86104 0.77424 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.75 10.51 71.24 0.75 0.00 16 2 C 0.19 4.96 8.34 88.34 0.74 5.69 16 3 N -0.52 -17.53 11.29 -303.82 -3.43 -20.96 16 4 C -0.05 -1.75 11.80 83.39 0.98 -0.76 16 5 C -0.03 -0.85 5.88 24.79 0.15 -0.71 16 6 C -0.05 -0.96 4.80 29.10 0.14 -0.82 16 7 C 0.51 13.89 7.67 87.66 0.67 14.56 16 8 O -0.59 -22.33 15.36 -3.02 -0.05 -22.37 16 9 N -0.59 -11.61 2.48 -822.59 -2.04 -13.65 16 10 C 0.07 0.76 9.40 127.77 1.20 1.96 16 11 C 0.13 2.58 2.88 45.00 0.13 2.71 16 12 H 0.06 1.73 6.90 -2.39 -0.02 1.71 16 13 C -0.15 -1.68 9.17 71.98 0.66 -1.02 16 14 C 0.05 0.96 4.98 86.31 0.43 1.39 16 15 N -0.68 -19.78 5.85 -517.92 -3.03 -22.81 16 16 C 0.06 1.92 6.17 85.56 0.53 2.44 16 17 C 0.45 20.34 7.82 87.66 0.69 21.03 16 18 O -0.62 -35.18 15.78 -3.07 -0.05 -35.23 16 19 N -0.59 -28.04 5.09 -306.99 -1.56 -29.60 16 20 C -0.33 -19.61 10.16 84.04 0.85 -18.76 16 21 H 0.05 3.65 7.39 -2.91 -0.02 3.63 16 22 C -0.02 -0.98 5.50 84.93 0.47 -0.51 16 23 N -0.94 -57.33 13.96 21.66 0.30 -57.03 16 24 Si 0.97 38.81 27.74 68.60 1.90 40.72 16 25 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 26 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 27 H -0.23 -7.73 6.52 99.48 0.65 -7.08 16 28 O -0.21 -5.75 10.78 -3.78 -0.04 -5.79 16 29 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.18 5.96 8.06 -2.91 -0.02 5.94 16 33 H 0.14 2.56 8.11 -2.39 -0.02 2.54 16 34 H 0.15 1.82 7.40 -2.39 -0.02 1.80 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.10 0.59 6.43 -2.38 -0.02 0.58 16 37 H 0.09 0.59 6.44 -2.39 -0.02 0.58 16 38 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 40 H 0.08 0.59 6.66 -2.39 -0.02 0.57 16 41 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.10 1.37 7.84 -2.39 -0.02 1.35 16 43 H 0.33 11.97 8.43 -89.69 -0.76 11.22 16 44 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 46 H 0.39 15.12 5.76 -92.71 -0.53 14.59 16 47 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -95.44 395.15 0.05 -95.39 By element: Atomic # 1 Polarization: 44.47 SS G_CDS: -0.34 Total: 44.13 kcal Atomic # 6 Polarization: 18.82 SS G_CDS: 8.38 Total: 27.20 kcal Atomic # 7 Polarization: -134.28 SS G_CDS: -9.76 Total: -144.05 kcal Atomic # 8 Polarization: -63.26 SS G_CDS: -0.14 Total: -63.40 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 1.90 Total: 40.72 kcal Total: -95.44 0.05 -95.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482293741.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.786 kcal (2) G-P(sol) polarization free energy of solvation -95.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds