Wall clock time and date at job start Tue Mar 31 2020 21:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30250 * 125.62048 * 2 1 4 4 C 1.34484 * 108.70027 * 179.97438 * 3 2 1 5 5 C 1.34330 * 107.66836 * 0.27078 * 4 3 2 6 6 C 1.50694 * 126.44286 * 179.73187 * 5 4 3 7 7 C 1.50703 * 109.47219 * 89.99855 * 6 5 4 8 8 O 1.21282 * 119.99970 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00193 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99866 * 359.97438 * 9 7 6 11 11 C 1.46504 * 119.99927 * 179.97438 * 9 7 6 12 12 H 1.09004 * 109.46888 * 359.97438 * 11 9 7 13 13 C 1.52999 * 109.46660 * 239.99587 * 11 9 7 14 14 C 1.52993 * 109.47319 * 119.99764 * 11 9 7 15 15 N 1.46904 * 109.47032 * 304.99977 * 14 11 9 16 16 C 1.46902 * 110.99970 * 179.97438 * 15 14 11 17 17 C 1.50697 * 109.47191 * 179.97438 * 16 15 14 18 18 O 1.21293 * 119.99896 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00376 * 180.02562 * 17 16 15 20 20 C 1.37094 * 120.00314 * 180.02562 * 19 17 16 21 21 H 1.07996 * 119.99897 * 0.02562 * 20 19 17 22 22 C 1.38949 * 120.00210 * 180.02562 * 20 19 17 23 23 N 1.31406 * 120.00382 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99820 * 359.97438 * 22 20 19 25 25 H 1.48506 * 109.46925 * 90.00428 * 24 22 20 26 26 H 1.48503 * 109.47258 * 210.00152 * 24 22 20 27 27 H 1.48496 * 109.47334 * 330.00634 * 24 22 20 28 28 O 1.33972 * 125.61724 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47097 * 90.02027 * 1 2 3 30 30 H 1.09007 * 109.47129 * 210.02172 * 1 2 3 31 31 H 1.08997 * 109.46764 * 330.01876 * 1 2 3 32 32 H 1.08002 * 126.16218 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.47520 * 209.99424 * 6 5 4 34 34 H 1.09003 * 109.47512 * 329.99686 * 6 5 4 35 35 H 1.09008 * 109.46718 * 90.00386 * 10 9 7 36 36 H 1.08995 * 109.47253 * 209.99865 * 10 9 7 37 37 H 1.09000 * 109.47121 * 330.00507 * 10 9 7 38 38 H 1.09008 * 109.47368 * 60.00052 * 13 11 9 39 39 H 1.09007 * 109.47176 * 179.97438 * 13 11 9 40 40 H 1.08997 * 109.47333 * 299.99942 * 13 11 9 41 41 H 1.09005 * 109.47456 * 64.99462 * 14 11 9 42 42 H 1.08998 * 109.47581 * 184.99718 * 14 11 9 43 43 H 1.00900 * 110.99576 * 303.95033 * 15 14 11 44 44 H 1.08996 * 109.47474 * 299.99870 * 16 15 14 45 45 H 1.09003 * 109.46902 * 60.00122 * 16 15 14 46 46 H 0.97003 * 119.99504 * 0.02562 * 19 17 16 47 47 H 0.96996 * 120.00698 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 0.0006 5 6 3.5698 -0.6758 -0.0051 6 6 4.7936 -1.5550 -0.0124 7 6 5.2058 -1.8540 1.4060 8 8 4.5688 -1.3977 2.3316 9 7 6.2830 -2.6278 1.6459 10 6 7.0529 -3.1786 0.5278 11 6 6.6840 -2.9180 3.0247 12 1 5.9977 -2.4259 3.7139 13 6 8.1038 -2.3999 3.2626 14 6 6.6466 -4.4293 3.2594 15 7 5.3149 -4.9455 2.9157 16 6 5.2419 -6.3972 3.1285 17 6 3.8642 -6.8892 2.7668 18 8 3.0257 -6.1076 2.3703 19 7 3.5636 -8.1978 2.8839 20 6 2.3104 -8.6455 2.5544 21 1 1.5642 -7.9497 2.2006 22 6 2.0004 -9.9945 2.6757 23 7 0.7994 -10.4238 2.3593 24 14 3.2915 -11.1982 3.2870 25 1 3.2107 -11.3017 4.7663 26 1 3.0489 -12.5332 2.6835 27 1 4.6411 -10.7167 2.8975 28 8 2.2872 -1.0891 0.0005 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3634 -0.8898 0.5142 31 1 -0.3633 0.8901 0.5135 32 1 4.4157 1.3161 0.0003 33 1 4.5680 -2.4877 -0.5294 34 1 5.6065 -1.0421 -0.5265 35 1 7.8432 -2.4803 0.2520 36 1 7.4955 -4.1293 0.8248 37 1 6.3928 -3.3357 -0.3253 38 1 8.1304 -1.3230 3.0955 39 1 8.4021 -2.6154 4.2887 40 1 8.7903 -2.8916 2.5735 41 1 7.3964 -4.9130 2.6332 42 1 6.8584 -4.6397 4.3077 43 1 4.5959 -4.4666 3.4372 44 1 5.9818 -6.8941 2.5011 45 1 5.4440 -6.6214 4.1759 46 1 4.2341 -8.8228 3.2014 47 1 0.5831 -11.3655 2.4436 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482293751.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:16 Heat of formation + Delta-G solvation = -69.088366 kcal Electronic energy + Delta-G solvation = -29502.608489 eV Core-core repulsion = 25300.421469 eV Total energy + Delta-G solvation = -4202.187020 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.35462 -41.04607 -40.28061 -37.99600 -36.20471 -35.79382 -35.59719 -34.28396 -33.76518 -32.72954 -31.01449 -29.10206 -27.72369 -27.05772 -26.57992 -24.51289 -23.58712 -22.71540 -21.85376 -21.30797 -20.39988 -19.94486 -18.57254 -18.05986 -17.82434 -17.62034 -17.13534 -16.83426 -16.60456 -16.46200 -15.75878 -15.60305 -15.34078 -15.11694 -14.96220 -14.76227 -14.39681 -14.37297 -14.07118 -14.00129 -13.93436 -13.82683 -13.38171 -13.35916 -13.18828 -13.11373 -12.98170 -12.84987 -12.75922 -12.48218 -12.43076 -12.31921 -11.98580 -11.77127 -11.63017 -11.53327 -10.94167 -10.47234 -10.26985 -9.66884 -9.54275 -9.32656 -8.42817 -6.04345 0.38026 1.28641 1.34721 1.43873 1.57411 1.63869 1.70948 1.94370 2.18768 2.21941 2.71269 3.13257 3.13391 3.36579 3.54722 3.71332 3.91592 4.01190 4.10125 4.12954 4.22018 4.30398 4.35679 4.38563 4.44764 4.53285 4.57652 4.60616 4.64473 4.65964 4.74882 4.81889 4.84746 4.98323 5.02231 5.09185 5.14133 5.30194 5.36168 5.50875 5.65723 5.88516 6.04211 6.25450 6.43435 6.58211 6.68349 6.86552 7.20971 7.37850 7.95777 8.75131 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009899 B = 0.002985 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.997072 B = 9378.562362 C =11713.368984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.177 3.823 3 N -0.510 5.510 4 C -0.037 4.037 5 C -0.043 4.043 6 C -0.049 4.049 7 C 0.514 3.486 8 O -0.591 6.591 9 N -0.587 5.587 10 C 0.070 3.930 11 C 0.135 3.865 12 H 0.065 0.935 13 C -0.145 4.145 14 C 0.050 3.950 15 N -0.681 5.681 16 C 0.065 3.935 17 C 0.446 3.554 18 O -0.617 6.617 19 N -0.590 5.590 20 C -0.331 4.331 21 H 0.051 0.949 22 C -0.016 4.016 23 N -0.935 5.935 24 Si 0.968 3.032 25 H -0.258 1.258 26 H -0.274 1.274 27 H -0.228 1.228 28 O -0.221 6.221 29 H 0.115 0.885 30 H 0.090 0.910 31 H 0.114 0.886 32 H 0.208 0.792 33 H 0.120 0.880 34 H 0.170 0.830 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.055 0.945 43 H 0.333 0.667 44 H 0.120 0.880 45 H 0.074 0.926 46 H 0.390 0.610 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.570 15.634 -3.500 26.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.029 4.029 3 N -0.241 5.241 4 C -0.175 4.175 5 C -0.096 4.096 6 C -0.088 4.088 7 C 0.302 3.698 8 O -0.472 6.472 9 N -0.318 5.318 10 C -0.071 4.071 11 C 0.031 3.969 12 H 0.083 0.917 13 C -0.204 4.204 14 C -0.079 4.079 15 N -0.312 5.312 16 C -0.067 4.067 17 C 0.234 3.766 18 O -0.501 6.501 19 N -0.232 5.232 20 C -0.460 4.460 21 H 0.069 0.931 22 C -0.214 4.214 23 N -0.576 5.576 24 Si 0.788 3.212 25 H -0.183 1.183 26 H -0.199 1.199 27 H -0.151 1.151 28 O -0.108 6.108 29 H 0.133 0.867 30 H 0.109 0.891 31 H 0.132 0.868 32 H 0.224 0.776 33 H 0.138 0.862 34 H 0.187 0.813 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.119 0.881 42 H 0.073 0.927 43 H 0.150 0.850 44 H 0.138 0.862 45 H 0.092 0.908 46 H 0.226 0.774 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 19.452 16.718 -3.982 25.956 hybrid contribution -0.210 -1.680 1.308 2.139 sum 19.242 15.038 -2.674 24.567 Atomic orbital electron populations 1.20504 0.78839 1.05937 1.06230 1.27182 0.98029 0.78159 0.99487 1.70408 1.02833 1.30770 1.20085 1.23398 0.95528 0.92997 1.05562 1.23132 0.83520 0.95584 1.07331 1.20268 0.92107 1.01079 0.95341 1.20668 0.79909 0.78160 0.91044 1.90699 1.54484 1.54537 1.47435 1.47626 1.27849 1.48538 1.07799 1.22059 0.96548 1.00340 0.88173 1.21145 0.97948 0.94641 0.83193 0.91701 1.21991 0.93451 1.01342 1.03589 1.22495 0.90460 0.94429 1.00492 1.60046 1.05499 1.02277 1.63413 1.21633 0.93011 0.90337 1.01764 1.21091 0.91358 0.81962 0.82213 1.90573 1.52339 1.55953 1.51267 1.42013 1.12203 1.07975 1.60987 1.18985 0.89469 0.93948 1.43584 0.93123 1.26159 0.99521 0.98783 0.96978 1.69808 1.22212 1.17005 1.48564 0.85327 0.79015 0.77572 0.79335 1.18270 1.19949 1.15124 1.84429 1.17740 1.38855 1.69820 0.86695 0.89079 0.86800 0.77550 0.86160 0.81283 0.89592 0.89852 0.90596 0.92516 0.90234 0.89875 0.88086 0.92694 0.84987 0.86165 0.90791 0.77396 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.14 10.51 71.24 0.75 -0.39 16 2 C 0.18 5.26 8.34 88.34 0.74 6.00 16 3 N -0.51 -15.55 11.29 -303.82 -3.43 -18.98 16 4 C -0.04 -0.99 11.80 83.39 0.98 -0.01 16 5 C -0.04 -1.22 5.88 24.79 0.15 -1.08 16 6 C -0.05 -1.01 4.80 29.10 0.14 -0.87 16 7 C 0.51 13.88 7.67 87.66 0.67 14.55 16 8 O -0.59 -22.30 15.36 -3.04 -0.05 -22.35 16 9 N -0.59 -11.62 2.49 -822.58 -2.04 -13.67 16 10 C 0.07 0.79 9.30 127.77 1.19 1.98 16 11 C 0.13 2.59 2.88 44.99 0.13 2.72 16 12 H 0.06 1.73 6.90 -2.38 -0.02 1.71 16 13 C -0.15 -1.65 9.19 71.98 0.66 -0.99 16 14 C 0.05 0.93 4.93 86.30 0.43 1.36 16 15 N -0.68 -20.06 5.85 -517.93 -3.03 -23.09 16 16 C 0.06 1.92 6.17 85.56 0.53 2.45 16 17 C 0.45 20.42 7.82 87.66 0.69 21.11 16 18 O -0.62 -35.60 15.78 -3.07 -0.05 -35.64 16 19 N -0.59 -27.99 5.09 -307.00 -1.56 -29.56 16 20 C -0.33 -19.67 10.16 84.04 0.85 -18.82 16 21 H 0.05 3.62 7.39 -2.91 -0.02 3.60 16 22 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 23 N -0.94 -56.93 13.96 21.66 0.30 -56.63 16 24 Si 0.97 38.59 27.74 68.60 1.90 40.49 16 25 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 26 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 27 H -0.23 -7.51 6.52 99.48 0.65 -6.86 16 28 O -0.22 -7.53 10.78 -3.76 -0.04 -7.58 16 29 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 31 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.21 4.01 8.06 -2.91 -0.02 3.98 16 33 H 0.12 2.42 7.40 -2.39 -0.02 2.40 16 34 H 0.17 1.73 8.11 -2.39 -0.02 1.71 16 35 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 36 H 0.08 0.84 6.53 -2.39 -0.02 0.83 16 37 H 0.08 0.83 6.44 -2.39 -0.02 0.82 16 38 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 39 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 40 H 0.08 0.60 7.67 -2.39 -0.02 0.58 16 41 H 0.10 1.37 6.88 -2.38 -0.02 1.36 16 42 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.33 12.11 8.43 -89.69 -0.76 11.35 16 44 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 45 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.39 15.09 5.76 -92.71 -0.53 14.56 16 47 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -95.36 395.17 0.03 -95.33 By element: Atomic # 1 Polarization: 44.42 SS G_CDS: -0.34 Total: 44.09 kcal Atomic # 6 Polarization: 19.21 SS G_CDS: 8.37 Total: 27.58 kcal Atomic # 7 Polarization: -132.15 SS G_CDS: -9.77 Total: -141.91 kcal Atomic # 8 Polarization: -65.43 SS G_CDS: -0.14 Total: -65.57 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 1.90 Total: 40.49 kcal Total: -95.36 0.03 -95.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482293751.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.237 kcal (2) G-P(sol) polarization free energy of solvation -95.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds