Wall clock time and date at job start Tue Mar 31 2020 22:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.46873 * 2 1 4 4 N 1.33696 * 126.27370 * 90.02860 * 3 2 1 5 5 C 1.30614 * 108.99885 * 179.97438 * 4 3 2 6 6 O 1.33668 * 109.15436 * 0.02562 * 5 4 3 7 7 C 1.35344 * 107.68237 * 359.75502 * 6 5 4 8 8 C 1.46723 * 126.64649 * 180.26343 * 7 6 5 9 9 O 1.21681 * 120.00505 * 173.99560 * 8 7 6 10 10 N 1.34777 * 119.99466 * 354.00159 * 8 7 6 11 11 C 1.46498 * 120.00469 * 4.40074 * 10 8 7 12 12 C 1.53002 * 109.47051 * 83.73181 * 11 10 8 13 13 C 1.46504 * 119.99978 * 184.40403 * 10 8 7 14 14 C 1.53006 * 109.47086 * 89.99407 * 13 10 8 15 15 N 1.46901 * 109.47038 * 180.02562 * 14 13 10 16 16 C 1.46903 * 110.99520 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.46703 * 179.97438 * 16 15 14 18 18 O 1.21294 * 119.99737 * 0.02562 * 17 16 15 19 19 N 1.34778 * 119.99805 * 179.97438 * 17 16 15 20 20 C 1.37095 * 119.99534 * 180.02562 * 19 17 16 21 21 H 1.07992 * 120.00616 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99876 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99660 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00304 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47270 * 90.00125 * 24 22 20 26 26 H 1.48498 * 109.47361 * 209.99999 * 24 22 20 27 27 H 1.48498 * 109.47262 * 330.00155 * 24 22 20 28 28 H 1.08998 * 109.46841 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46954 * 299.99610 * 1 2 3 30 30 H 1.09004 * 109.47227 * 60.00010 * 1 2 3 31 31 H 1.09000 * 109.47205 * 240.00841 * 2 1 3 32 32 H 1.09001 * 109.47629 * 120.00303 * 2 1 3 33 33 H 1.07996 * 125.42316 * 180.02562 * 5 4 3 34 34 H 1.08997 * 109.47528 * 203.73352 * 11 10 8 35 35 H 1.08998 * 109.47199 * 323.73551 * 11 10 8 36 36 H 1.08998 * 109.46817 * 60.00136 * 12 11 10 37 37 H 1.08999 * 109.47220 * 180.02562 * 12 11 10 38 38 H 1.08997 * 109.47094 * 300.00437 * 12 11 10 39 39 H 1.08994 * 109.47359 * 209.99409 * 13 10 8 40 40 H 1.09002 * 109.46566 * 330.00140 * 13 10 8 41 41 H 1.09001 * 109.47136 * 300.00580 * 14 13 10 42 42 H 1.09003 * 109.46554 * 60.00154 * 14 13 10 43 43 H 1.00898 * 110.99784 * 56.05137 * 15 14 13 44 44 H 1.08991 * 109.47287 * 299.99931 * 16 15 14 45 45 H 1.08996 * 109.46943 * 60.00340 * 16 15 14 46 46 H 0.96998 * 120.00186 * 0.02562 * 19 17 16 47 47 H 0.96999 * 120.00081 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2964 2.1664 1.0779 5 6 2.7124 3.3422 0.6900 6 8 2.7262 3.3839 -0.6460 7 6 2.3055 2.1799 -1.0991 8 6 2.1678 1.7714 -2.5016 9 8 1.8818 0.6207 -2.7750 10 7 2.3582 2.6709 -3.4872 11 6 2.7964 4.0307 -3.1633 12 6 4.3187 4.0532 -3.0110 13 6 2.1267 2.2887 -4.8824 14 6 0.6697 2.5720 -5.2539 15 7 0.4375 2.1882 -6.6527 16 6 -0.9541 2.4472 -7.0455 17 6 -1.1537 2.0426 -8.4834 18 8 -0.2279 1.5832 -9.1183 19 7 -2.3612 2.1903 -9.0636 20 6 -2.5429 1.8217 -10.3715 21 1 -1.7186 1.4126 -10.9368 22 6 -3.7876 1.9745 -10.9699 23 7 -4.7905 2.4727 -10.2822 24 14 -4.0355 1.4716 -12.7518 25 1 -4.4581 0.0492 -12.8105 26 1 -5.0840 2.3252 -13.3658 27 1 -2.7614 1.6405 -13.4956 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.9995 4.1519 1.3445 34 1 2.5015 4.7081 -3.9647 35 1 2.3331 4.3491 -2.2295 36 1 4.7820 3.7349 -3.9448 37 1 4.6448 5.0649 -2.7696 38 1 4.6137 3.3758 -2.2096 39 1 2.7858 2.8654 -5.5312 40 1 2.3333 1.2257 -5.0069 41 1 0.0106 1.9953 -4.6050 42 1 0.4632 3.6350 -5.1293 43 1 0.6836 1.2221 -6.8082 44 1 -1.6247 1.8703 -6.4089 45 1 -1.1713 3.5095 -6.9339 46 1 -3.1016 2.5574 -8.5558 47 1 -5.6593 2.5797 -10.7000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482950955.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:06 Heat of formation + Delta-G solvation = -71.580730 kcal Electronic energy + Delta-G solvation = -29023.365298 eV Core-core repulsion = 24821.070201 eV Total energy + Delta-G solvation = -4202.295097 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.52368 -41.00224 -40.15675 -37.94187 -36.89674 -36.26078 -35.79502 -34.02864 -33.29662 -32.26782 -31.13190 -29.89773 -27.78209 -26.13807 -25.24082 -24.73580 -24.13901 -23.37236 -22.12474 -21.18463 -20.70495 -19.91982 -18.59397 -18.08424 -17.84862 -17.77718 -17.38802 -17.06716 -16.51026 -16.19635 -15.97121 -15.95073 -15.47090 -15.32718 -15.09673 -14.86699 -14.81402 -14.53408 -14.23537 -13.95626 -13.75670 -13.62879 -13.52168 -13.38923 -12.97798 -12.82028 -12.77197 -12.58618 -12.42508 -12.25473 -12.20774 -12.12414 -12.12030 -12.03939 -11.66369 -11.51707 -11.19781 -10.41411 -10.19138 -10.03070 -9.78533 -9.45230 -8.47533 -5.96461 -0.25847 1.32226 1.37843 1.39288 1.41791 1.54770 1.85841 1.94673 2.03015 2.29250 2.94279 3.10264 3.19410 3.39434 3.54102 3.61706 3.93972 4.01136 4.05393 4.23027 4.27079 4.28662 4.32566 4.35678 4.41170 4.45727 4.46370 4.55719 4.56312 4.69895 4.76799 4.79282 4.92414 4.94891 4.96118 5.07734 5.17501 5.26212 5.37064 5.37928 5.40499 5.80842 6.04217 6.08772 6.27272 6.52342 6.58394 6.82348 7.11187 7.54195 8.09207 8.69908 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019637 B = 0.001944 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.503647 B =14403.310593 C =15139.353330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.056 4.056 3 C 0.075 3.925 4 N -0.524 5.524 5 C 0.222 3.778 6 O -0.178 6.178 7 C -0.128 4.128 8 C 0.600 3.400 9 O -0.545 6.545 10 N -0.595 5.595 11 C 0.094 3.906 12 C -0.159 4.159 13 C 0.124 3.876 14 C 0.055 3.945 15 N -0.674 5.674 16 C 0.066 3.934 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.573 5.573 20 C -0.334 4.334 21 H 0.080 0.920 22 C -0.014 4.014 23 N -0.920 5.920 24 Si 0.994 3.006 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.272 1.272 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.038 0.962 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.307 0.693 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.054 0.946 37 H 0.092 0.908 38 H 0.043 0.957 39 H 0.106 0.894 40 H 0.072 0.928 41 H 0.022 0.978 42 H 0.088 0.912 43 H 0.345 0.655 44 H 0.061 0.939 45 H 0.109 0.891 46 H 0.397 0.603 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.705 6.710 25.860 30.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.094 4.094 3 C -0.048 4.048 4 N -0.252 5.252 5 C -0.002 4.002 6 O -0.065 6.065 7 C -0.183 4.183 8 C 0.389 3.611 9 O -0.425 6.425 10 N -0.326 5.326 11 C -0.027 4.027 12 C -0.217 4.217 13 C 0.001 3.999 14 C -0.075 4.075 15 N -0.307 5.307 16 C -0.066 4.066 17 C 0.225 3.775 18 O -0.508 6.508 19 N -0.210 5.210 20 C -0.464 4.464 21 H 0.098 0.902 22 C -0.214 4.214 23 N -0.561 5.561 24 Si 0.818 3.182 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.197 1.197 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.322 0.678 34 H 0.121 0.879 35 H 0.113 0.887 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.062 0.938 39 H 0.125 0.875 40 H 0.091 0.909 41 H 0.040 0.960 42 H 0.106 0.894 43 H 0.163 0.837 44 H 0.079 0.921 45 H 0.127 0.873 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.163 6.345 25.553 30.384 hybrid contribution -1.064 -0.577 -0.792 1.446 sum 14.099 5.768 24.761 29.072 Atomic orbital electron populations 1.21585 0.93385 1.02979 1.01208 1.20184 0.96972 0.87987 1.04242 1.22220 0.97212 0.98432 0.86972 1.70381 1.18759 1.04679 1.31378 1.29625 0.93361 0.97499 0.79734 1.84727 1.64902 1.32225 1.24640 1.22517 1.14116 0.86260 0.95392 1.16705 0.77167 0.84889 0.82386 1.90852 1.50256 1.19048 1.82347 1.47917 1.65480 1.13219 1.06002 1.22081 0.96217 0.80962 1.03474 1.22112 0.94551 1.03456 1.01628 1.21359 0.96068 1.02209 0.80228 1.22257 0.96427 1.01683 0.87149 1.60022 1.21107 1.28872 1.20674 1.21523 0.90390 1.03068 0.91641 1.20802 0.82815 0.83510 0.90338 1.90492 1.42443 1.51191 1.66701 1.41928 1.10438 1.56582 1.12025 1.19677 0.97091 1.40897 0.88685 0.90238 1.26071 0.94378 0.96658 1.04274 1.69673 1.02427 1.44985 1.39044 0.84907 0.78091 0.78370 0.76848 1.19666 1.19471 1.19702 0.90472 0.92219 0.94239 0.89566 0.89010 0.67792 0.87895 0.88714 0.92727 0.88952 0.93797 0.87545 0.90941 0.95983 0.89380 0.83697 0.92077 0.87348 0.76959 0.91265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 9.89 71.98 0.71 -1.83 16 2 C -0.06 -1.13 6.00 29.85 0.18 -0.95 16 3 C 0.08 1.55 6.41 41.83 0.27 1.82 16 4 N -0.52 -9.00 11.26 -303.12 -3.41 -12.41 16 5 C 0.22 2.00 13.21 130.42 1.72 3.72 16 6 O -0.18 -2.31 6.42 -7.12 -0.05 -2.36 16 7 C -0.13 -2.56 6.60 24.05 0.16 -2.40 16 8 C 0.60 14.27 7.59 86.46 0.66 14.93 16 9 O -0.55 -16.35 14.32 -4.29 -0.06 -16.41 16 10 N -0.60 -11.52 2.49 -826.47 -2.06 -13.58 16 11 C 0.09 1.18 5.71 86.38 0.49 1.67 16 12 C -0.16 -1.71 9.78 71.98 0.70 -1.01 16 13 C 0.12 2.69 5.67 86.38 0.49 3.18 16 14 C 0.05 1.34 6.01 86.30 0.52 1.86 16 15 N -0.67 -21.58 6.12 -517.92 -3.17 -24.75 16 16 C 0.07 2.32 6.17 85.56 0.53 2.85 16 17 C 0.44 21.16 7.82 87.66 0.69 21.84 16 18 O -0.62 -34.87 15.78 -3.07 -0.05 -34.92 16 19 N -0.57 -29.77 5.29 -306.98 -1.62 -31.39 16 20 C -0.33 -19.16 9.68 84.04 0.81 -18.35 16 21 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 22 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 23 N -0.92 -50.00 13.05 21.66 0.28 -49.72 16 24 Si 0.99 43.21 29.55 68.60 2.03 45.24 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 26 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 27 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 28 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.09 2.01 6.35 -2.39 -0.02 2.00 16 32 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.31 -1.18 8.06 -2.91 -0.02 -1.20 16 34 H 0.10 1.03 8.02 -2.39 -0.02 1.02 16 35 H 0.10 1.08 5.35 -2.39 -0.01 1.07 16 36 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.04 0.58 7.18 -2.39 -0.02 0.56 16 39 H 0.11 2.03 8.07 -2.39 -0.02 2.01 16 40 H 0.07 1.84 7.36 -2.39 -0.02 1.82 16 41 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.34 11.89 8.43 -89.70 -0.76 11.14 16 44 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 46 H 0.40 19.55 7.90 -92.71 -0.73 18.82 16 47 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -76.34 395.25 -0.19 -76.53 By element: Atomic # 1 Polarization: 37.21 SS G_CDS: -0.48 Total: 36.73 kcal Atomic # 6 Polarization: 18.64 SS G_CDS: 8.40 Total: 27.04 kcal Atomic # 7 Polarization: -121.87 SS G_CDS: -9.98 Total: -131.85 kcal Atomic # 8 Polarization: -53.54 SS G_CDS: -0.16 Total: -53.69 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -76.34 -0.19 -76.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482950955.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.951 kcal (2) G-P(sol) polarization free energy of solvation -76.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds