Wall clock time and date at job start Tue Mar 31 2020 21:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29951 * 126.28942 * 2 1 4 4 O 1.21304 * 110.25158 * 179.97438 * 3 2 1 5 5 C 1.33634 * 109.81058 * 0.02562 * 4 3 2 6 6 C 1.50707 * 126.55025 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.46981 * 270.02325 * 6 5 4 8 8 C 1.50702 * 109.46990 * 179.97438 * 7 6 5 9 9 O 1.21284 * 119.99884 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00127 * 179.97438 * 8 7 6 11 11 C 1.46927 * 120.63147 * 0.03137 * 10 8 7 12 12 C 1.53197 * 108.77528 * 233.58100 * 11 10 8 13 13 C 1.53100 * 109.33134 * 305.36729 * 12 11 10 14 14 C 1.53038 * 109.50776 * 61.33969 * 13 12 11 15 15 C 1.53003 * 109.49832 * 178.68452 * 14 13 12 16 16 O 1.42906 * 109.46869 * 184.93380 * 15 14 13 17 17 N 1.46496 * 109.49784 * 58.61801 * 14 13 12 18 18 C 1.36939 * 120.00077 * 180.02562 * 17 14 13 19 19 H 1.07997 * 119.99728 * 359.72656 * 18 17 14 20 20 C 1.38815 * 119.99845 * 180.02562 * 18 17 14 21 21 N 1.31619 * 119.99884 * 359.72042 * 20 18 17 22 22 Si 1.86798 * 119.99660 * 179.72678 * 20 18 17 23 23 H 1.48490 * 109.47339 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47239 * 119.99875 * 22 20 18 25 25 H 1.48504 * 109.46636 * 239.99434 * 22 20 18 26 26 C 1.46937 * 120.63177 * 180.02562 * 10 8 7 27 27 N 1.31124 * 106.90149 * 0.22150 * 5 4 3 28 28 H 1.09001 * 109.46858 * 89.97558 * 1 2 3 29 29 H 1.08996 * 109.47267 * 209.96861 * 1 2 3 30 30 H 1.08998 * 109.47327 * 329.97919 * 1 2 3 31 31 H 1.08992 * 109.47053 * 150.02166 * 6 5 4 32 32 H 1.09005 * 109.46595 * 30.02373 * 6 5 4 33 33 H 1.09005 * 109.47038 * 60.00147 * 7 6 5 34 34 H 1.08989 * 109.47381 * 299.99799 * 7 6 5 35 35 H 1.08996 * 109.58669 * 353.36771 * 11 10 8 36 36 H 1.08998 * 109.58767 * 113.65440 * 11 10 8 37 37 H 1.09001 * 109.49524 * 65.31535 * 12 11 10 38 38 H 1.08998 * 109.49844 * 185.40972 * 12 11 10 39 39 H 1.09003 * 109.44744 * 301.34803 * 13 12 11 40 40 H 1.09003 * 109.50699 * 181.36666 * 13 12 11 41 41 H 1.08993 * 109.47112 * 304.93694 * 15 14 13 42 42 H 1.08999 * 109.47225 * 64.93952 * 15 14 13 43 43 H 0.96702 * 113.99405 * 180.02562 * 16 15 14 44 44 H 0.97004 * 120.00009 * 0.07155 * 17 14 13 45 45 H 0.97000 * 119.99517 * 180.02562 * 21 20 18 46 46 H 1.08995 * 109.58441 * 6.63193 * 26 10 8 47 47 H 1.09000 * 109.70076 * 246.27294 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7123 0.0005 5 6 3.5299 -0.6211 0.0003 6 6 4.7970 -1.4370 0.0003 7 6 5.2261 -1.7124 -1.4422 8 6 6.4935 -2.5277 -1.4423 9 8 7.0031 -2.8566 -0.3920 10 7 7.0602 -2.8923 -2.6095 11 6 6.4545 -2.5020 -3.8899 12 6 6.2503 -3.7585 -4.7422 13 6 7.5822 -4.5012 -4.8774 14 6 8.0709 -4.9305 -3.4921 15 6 9.3854 -5.7012 -3.6304 16 8 9.7817 -6.2003 -2.3514 17 7 7.0644 -5.7893 -2.8630 18 6 7.2840 -6.2970 -1.6104 19 1 8.2010 -6.0679 -1.0880 20 6 6.3305 -7.1112 -1.0145 21 7 5.2131 -7.3906 -1.6514 22 14 6.6334 -7.8099 0.6911 23 1 7.9552 -7.3498 1.1870 24 1 5.5680 -7.3425 1.6139 25 1 6.6177 -9.2935 0.6281 26 6 8.2955 -3.6877 -2.6257 27 7 2.3031 -1.0841 -0.0052 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3633 -0.8902 0.5133 30 1 -0.3634 0.8898 0.5141 31 1 4.6205 -2.3822 0.5136 32 1 5.5841 -0.8856 0.5146 33 1 5.4026 -0.7671 -1.9556 34 1 4.4390 -2.2637 -1.9565 35 1 5.4922 -2.0234 -3.7081 36 1 7.1150 -1.8084 -4.4102 37 1 5.5186 -4.4085 -4.2624 38 1 5.8910 -3.4730 -5.7309 39 1 8.3204 -3.8422 -5.3347 40 1 7.4454 -5.3829 -5.5035 41 1 9.2471 -6.5348 -4.3189 42 1 10.1578 -5.0358 -4.0160 43 1 10.6094 -6.7002 -2.3636 44 1 6.2428 -5.9988 -3.3342 45 1 4.5467 -7.9592 -1.2349 46 1 8.5479 -3.9915 -1.6098 47 1 9.1092 -3.0942 -3.0425 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484844523.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:01 Heat of formation + Delta-G solvation = 3.692333 kcal Electronic energy + Delta-G solvation = -30880.460212 eV Core-core repulsion = 26681.429200 eV Total energy + Delta-G solvation = -4199.031012 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.63731 -39.93019 -37.92119 -36.17550 -35.75514 -34.61178 -33.78970 -32.26854 -31.57697 -30.97778 -29.27946 -28.60291 -26.57753 -25.30877 -24.35202 -23.46995 -23.36294 -21.70878 -21.29594 -19.27999 -18.34380 -18.05236 -17.56033 -17.28083 -16.73105 -16.18111 -15.63699 -15.48416 -15.02434 -14.49726 -14.22383 -14.19774 -13.80245 -13.75903 -13.75510 -13.33362 -13.28946 -13.04099 -12.80002 -12.75700 -12.34034 -12.27857 -12.18023 -11.99991 -11.61939 -11.39883 -11.18868 -11.14184 -11.03253 -10.79753 -10.71169 -10.60792 -10.45886 -10.13539 -9.95990 -9.68071 -9.48868 -9.27516 -8.96556 -8.78040 -8.05713 -6.78621 -5.54213 -2.79626 1.05532 2.14659 2.70943 3.12960 3.45937 3.59868 3.63513 3.66949 3.71055 3.95945 4.66717 4.75026 4.81641 4.84595 4.96558 5.07723 5.08849 5.17841 5.20733 5.24971 5.34290 5.43663 5.46452 5.52229 5.63344 5.69882 5.76414 5.77179 5.79519 5.87248 5.90881 5.97256 5.98064 6.02705 6.09322 6.18660 6.25845 6.36735 6.61007 6.78135 6.88484 7.09072 7.92188 8.10016 8.20342 8.39102 8.63790 8.71252 9.77481 10.24558 10.60233 11.69524 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011505 B = 0.003674 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.228925 B = 7619.687601 C = 8845.975649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.166 3.834 3 N -0.393 5.393 4 O 0.073 5.927 5 C 0.194 3.806 6 C -0.014 4.014 7 C -0.135 4.135 8 C 0.525 3.475 9 O -0.529 6.529 10 N -0.593 5.593 11 C 0.110 3.890 12 C -0.133 4.133 13 C -0.115 4.115 14 C 0.188 3.812 15 C 0.074 3.926 16 O -0.535 6.535 17 N -0.702 5.702 18 C -0.194 4.194 19 H 0.093 0.907 20 C -0.023 4.023 21 N -0.947 5.947 22 Si 0.901 3.099 23 H -0.280 1.280 24 H -0.297 1.297 25 H -0.299 1.299 26 C 0.111 3.889 27 N -0.478 5.478 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.123 0.877 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.037 0.963 42 H 0.023 0.977 43 H 0.351 0.649 44 H 0.381 0.619 45 H 0.248 0.752 46 H 0.104 0.896 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.401 14.925 -6.262 16.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 N -0.103 5.103 4 O 0.015 5.985 5 C -0.026 4.026 6 C -0.053 4.053 7 C -0.176 4.176 8 C 0.312 3.688 9 O -0.405 6.405 10 N -0.325 5.325 11 C -0.014 4.014 12 C -0.171 4.171 13 C -0.153 4.153 14 C 0.094 3.906 15 C -0.007 4.007 16 O -0.338 6.338 17 N -0.343 5.343 18 C -0.325 4.325 19 H 0.110 0.890 20 C -0.217 4.217 21 N -0.598 5.598 22 Si 0.734 3.266 23 H -0.206 1.206 24 H -0.225 1.225 25 H -0.227 1.227 26 C -0.014 4.014 27 N -0.212 5.212 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.141 0.859 32 H 0.128 0.872 33 H 0.111 0.889 34 H 0.120 0.880 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.056 0.944 42 H 0.041 0.959 43 H 0.196 0.804 44 H 0.216 0.784 45 H 0.058 0.942 46 H 0.122 0.878 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.274 15.510 -5.328 16.449 hybrid contribution 0.368 -0.970 0.371 1.102 sum -0.905 14.540 -4.957 15.388 Atomic orbital electron populations 1.20127 0.83056 1.04583 1.04274 1.25947 1.00628 0.83632 1.00446 1.74615 0.89488 1.24009 1.22139 1.85282 1.22293 1.25036 1.65843 1.28955 0.97138 0.81842 0.94658 1.20039 0.87424 0.99208 0.98659 1.21615 0.97962 1.01446 0.96599 1.19958 0.84976 0.80092 0.83812 1.90719 1.63901 1.55250 1.30648 1.47703 1.26797 1.53100 1.04882 1.21660 0.98057 0.96663 0.84978 1.21876 0.98737 0.97196 0.99294 1.21632 0.96865 1.00017 0.96819 1.19946 0.89417 0.90208 0.91018 1.22752 0.96019 0.96111 0.85788 1.86977 1.43251 1.74244 1.29309 1.42425 1.18530 1.55619 1.17705 1.19568 1.01176 1.20305 0.91449 0.88968 1.24643 0.96999 1.01760 0.98284 1.69663 1.09067 1.43191 1.37858 0.86155 0.77246 0.77974 0.85216 1.20557 1.22478 1.22702 1.22119 0.83491 0.91366 1.04393 1.72007 0.99795 1.29131 1.20291 0.89343 0.88953 0.89671 0.85850 0.87174 0.88858 0.87979 0.90495 0.91971 0.89968 0.91484 0.92033 0.91527 0.94429 0.95898 0.80438 0.78412 0.94227 0.87803 0.93740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.55 10.51 36.00 0.38 -0.17 16 2 C 0.17 2.18 8.22 -156.37 -1.28 0.89 16 3 N -0.39 -5.40 12.16 30.90 0.38 -5.02 16 4 O 0.07 0.96 11.31 18.12 0.20 1.17 16 5 C 0.19 2.60 7.77 -13.06 -0.10 2.50 16 6 C -0.01 -0.18 5.13 -27.88 -0.14 -0.33 16 7 C -0.14 -1.76 4.03 -27.88 -0.11 -1.87 16 8 C 0.52 9.16 7.70 -10.99 -0.08 9.07 16 9 O -0.53 -11.41 15.40 5.55 0.09 -11.32 16 10 N -0.59 -9.66 2.89 -172.78 -0.50 -10.16 16 11 C 0.11 1.35 6.34 -3.71 -0.02 1.33 16 12 C -0.13 -1.76 5.91 -26.58 -0.16 -1.92 16 13 C -0.12 -1.63 4.77 -26.66 -0.13 -1.76 16 14 C 0.19 3.40 0.68 -131.72 -0.09 3.31 16 15 C 0.07 1.25 6.09 37.16 0.23 1.48 16 16 O -0.54 -10.13 10.04 -35.23 -0.35 -10.49 16 17 N -0.70 -16.52 4.75 -47.14 -0.22 -16.75 16 18 C -0.19 -5.32 8.07 -15.06 -0.12 -5.44 16 19 H 0.09 2.62 5.25 -52.49 -0.28 2.34 16 20 C -0.02 -0.69 5.50 -17.43 -0.10 -0.79 16 21 N -0.95 -28.91 13.06 55.49 0.72 -28.19 16 22 Si 0.90 24.04 29.55 -169.99 -5.02 19.01 16 23 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 24 H -0.30 -8.08 7.11 56.52 0.40 -7.68 16 25 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 26 C 0.11 1.99 4.91 -3.73 -0.02 1.97 16 27 N -0.48 -7.09 11.55 -9.86 -0.11 -7.20 16 28 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.12 1.86 8.10 -51.93 -0.42 1.44 16 32 H 0.11 1.26 8.10 -51.93 -0.42 0.84 16 33 H 0.09 0.93 7.94 -51.93 -0.41 0.51 16 34 H 0.10 1.37 7.69 -51.94 -0.40 0.97 16 35 H 0.08 0.81 5.93 -51.93 -0.31 0.51 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 1.38 6.75 -51.93 -0.35 1.03 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.35 4.90 9.12 45.56 0.42 5.31 16 44 H 0.38 9.65 6.43 -40.82 -0.26 9.39 16 45 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.10 2.32 5.82 -51.93 -0.30 2.02 16 47 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 378.51 15.07 5.70 5.70 Total: -1.00 -36.27 378.51 -6.97 -43.25 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -6.10 Total: 11.70 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -1.75 Total: 8.28 kcal Atomic # 7 Polarization: -67.57 SS G_CDS: 0.26 Total: -67.31 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.06 Total: -20.64 kcal Atomic # 14 Polarization: 24.04 SS G_CDS: -5.02 Total: 19.01 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.27 -6.97 -43.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484844523.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.938 kcal (2) G-P(sol) polarization free energy of solvation -36.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds