Wall clock time and date at job start Tue Mar 31 2020 21:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29951 * 126.28942 * 2 1 4 4 O 1.21304 * 110.25158 * 179.97438 * 3 2 1 5 5 C 1.33634 * 109.81058 * 0.02562 * 4 3 2 6 6 C 1.50707 * 126.55025 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.46981 * 270.02325 * 6 5 4 8 8 C 1.50702 * 109.46990 * 179.97438 * 7 6 5 9 9 O 1.21284 * 119.99884 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00127 * 179.97438 * 8 7 6 11 11 C 1.46927 * 120.63147 * 0.03137 * 10 8 7 12 12 C 1.53197 * 108.77528 * 233.58100 * 11 10 8 13 13 C 1.53100 * 109.33134 * 305.36729 * 12 11 10 14 14 C 1.53038 * 109.50776 * 61.33969 * 13 12 11 15 15 C 1.53003 * 109.49832 * 178.68452 * 14 13 12 16 16 O 1.42906 * 109.46869 * 184.93380 * 15 14 13 17 17 N 1.46496 * 109.49784 * 58.61801 * 14 13 12 18 18 C 1.36939 * 120.00077 * 180.02562 * 17 14 13 19 19 H 1.07997 * 119.99728 * 359.72656 * 18 17 14 20 20 C 1.38815 * 119.99845 * 180.02562 * 18 17 14 21 21 N 1.31619 * 119.99884 * 359.72042 * 20 18 17 22 22 Si 1.86798 * 119.99660 * 179.72678 * 20 18 17 23 23 H 1.48490 * 109.47339 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47239 * 119.99875 * 22 20 18 25 25 H 1.48504 * 109.46636 * 239.99434 * 22 20 18 26 26 C 1.46937 * 120.63177 * 180.02562 * 10 8 7 27 27 N 1.31124 * 106.90149 * 0.22150 * 5 4 3 28 28 H 1.09001 * 109.46858 * 89.97558 * 1 2 3 29 29 H 1.08996 * 109.47267 * 209.96861 * 1 2 3 30 30 H 1.08998 * 109.47327 * 329.97919 * 1 2 3 31 31 H 1.08992 * 109.47053 * 150.02166 * 6 5 4 32 32 H 1.09005 * 109.46595 * 30.02373 * 6 5 4 33 33 H 1.09005 * 109.47038 * 60.00147 * 7 6 5 34 34 H 1.08989 * 109.47381 * 299.99799 * 7 6 5 35 35 H 1.08996 * 109.58669 * 353.36771 * 11 10 8 36 36 H 1.08998 * 109.58767 * 113.65440 * 11 10 8 37 37 H 1.09001 * 109.49524 * 65.31535 * 12 11 10 38 38 H 1.08998 * 109.49844 * 185.40972 * 12 11 10 39 39 H 1.09003 * 109.44744 * 301.34803 * 13 12 11 40 40 H 1.09003 * 109.50699 * 181.36666 * 13 12 11 41 41 H 1.08993 * 109.47112 * 304.93694 * 15 14 13 42 42 H 1.08999 * 109.47225 * 64.93952 * 15 14 13 43 43 H 0.96702 * 113.99405 * 180.02562 * 16 15 14 44 44 H 0.97004 * 120.00009 * 0.07155 * 17 14 13 45 45 H 0.97000 * 119.99517 * 180.02562 * 21 20 18 46 46 H 1.08995 * 109.58441 * 6.63193 * 26 10 8 47 47 H 1.09000 * 109.70076 * 246.27294 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7123 0.0005 5 6 3.5299 -0.6211 0.0003 6 6 4.7970 -1.4370 0.0003 7 6 5.2261 -1.7124 -1.4422 8 6 6.4935 -2.5277 -1.4423 9 8 7.0031 -2.8566 -0.3920 10 7 7.0602 -2.8923 -2.6095 11 6 6.4545 -2.5020 -3.8899 12 6 6.2503 -3.7585 -4.7422 13 6 7.5822 -4.5012 -4.8774 14 6 8.0709 -4.9305 -3.4921 15 6 9.3854 -5.7012 -3.6304 16 8 9.7817 -6.2003 -2.3514 17 7 7.0644 -5.7893 -2.8630 18 6 7.2840 -6.2970 -1.6104 19 1 8.2010 -6.0679 -1.0880 20 6 6.3305 -7.1112 -1.0145 21 7 5.2131 -7.3906 -1.6514 22 14 6.6334 -7.8099 0.6911 23 1 7.9552 -7.3498 1.1870 24 1 5.5680 -7.3425 1.6139 25 1 6.6177 -9.2935 0.6281 26 6 8.2955 -3.6877 -2.6257 27 7 2.3031 -1.0841 -0.0052 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3633 -0.8902 0.5133 30 1 -0.3634 0.8898 0.5141 31 1 4.6205 -2.3822 0.5136 32 1 5.5841 -0.8856 0.5146 33 1 5.4026 -0.7671 -1.9556 34 1 4.4390 -2.2637 -1.9565 35 1 5.4922 -2.0234 -3.7081 36 1 7.1150 -1.8084 -4.4102 37 1 5.5186 -4.4085 -4.2624 38 1 5.8910 -3.4730 -5.7309 39 1 8.3204 -3.8422 -5.3347 40 1 7.4454 -5.3829 -5.5035 41 1 9.2471 -6.5348 -4.3189 42 1 10.1578 -5.0358 -4.0160 43 1 10.6094 -6.7002 -2.3636 44 1 6.2428 -5.9988 -3.3342 45 1 4.5467 -7.9592 -1.2349 46 1 8.5479 -3.9915 -1.6098 47 1 9.1092 -3.0942 -3.0425 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484844523.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:00 Heat of formation + Delta-G solvation = -25.986844 kcal Electronic energy + Delta-G solvation = -30881.747197 eV Core-core repulsion = 26681.429200 eV Total energy + Delta-G solvation = -4200.317998 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -46.66573 -41.24664 -39.32521 -37.21456 -37.09735 -35.71205 -35.47863 -33.91335 -32.66129 -32.38282 -30.42657 -30.07597 -27.82359 -26.49722 -25.65625 -25.40071 -24.40942 -22.89960 -22.31831 -20.62908 -19.66533 -19.26784 -19.03418 -18.57238 -17.95034 -17.74835 -17.04363 -16.69342 -16.40397 -15.94917 -15.67229 -15.42529 -15.34639 -14.97511 -14.63597 -14.61013 -14.48870 -14.34465 -14.06786 -13.67799 -13.57013 -13.49152 -13.40212 -13.25431 -13.07695 -12.90362 -12.67756 -12.54885 -12.34965 -12.25678 -12.08637 -12.00111 -11.85443 -11.72118 -11.30954 -11.25441 -10.98548 -10.85976 -10.58662 -10.52559 -9.43553 -8.75053 -7.77012 -4.97089 0.01625 1.13157 1.42340 1.46325 1.54582 1.62536 1.81892 2.29255 2.66947 2.68016 3.01928 3.43392 3.56915 3.72494 3.78893 3.93530 3.96855 4.02801 4.04818 4.19343 4.26332 4.36427 4.42961 4.48650 4.56270 4.57594 4.60899 4.66530 4.72677 4.77682 4.83422 4.87366 4.89126 4.92047 4.98593 5.08136 5.08312 5.09655 5.24531 5.50300 5.57152 5.79565 5.98304 6.48545 6.65216 7.08048 7.19528 7.40068 7.57360 8.26713 8.48906 9.47712 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011505 B = 0.003674 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.228925 B = 7619.687601 C = 8845.975649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.163 3.837 3 N -0.405 5.405 4 O 0.074 5.926 5 C 0.202 3.798 6 C -0.008 4.008 7 C -0.121 4.121 8 C 0.511 3.489 9 O -0.583 6.583 10 N -0.595 5.595 11 C 0.105 3.895 12 C -0.130 4.130 13 C -0.110 4.110 14 C 0.173 3.827 15 C 0.073 3.927 16 O -0.571 6.571 17 N -0.710 5.710 18 C -0.157 4.157 19 H 0.083 0.917 20 C -0.090 4.090 21 N -0.979 5.979 22 Si 0.942 3.058 23 H -0.278 1.278 24 H -0.309 1.309 25 H -0.300 1.300 26 C 0.116 3.884 27 N -0.509 5.509 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.124 0.876 33 H 0.134 0.866 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.039 0.961 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.063 0.937 41 H 0.035 0.965 42 H 0.065 0.935 43 H 0.373 0.627 44 H 0.370 0.630 45 H 0.238 0.762 46 H 0.053 0.947 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.279 17.431 -8.716 19.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.109 4.109 3 N -0.116 5.116 4 O 0.019 5.981 5 C -0.018 4.018 6 C -0.047 4.047 7 C -0.162 4.162 8 C 0.300 3.700 9 O -0.464 6.464 10 N -0.326 5.326 11 C -0.017 4.017 12 C -0.169 4.169 13 C -0.147 4.147 14 C 0.082 3.918 15 C -0.007 4.007 16 O -0.376 6.376 17 N -0.349 5.349 18 C -0.290 4.290 19 H 0.100 0.900 20 C -0.279 4.279 21 N -0.634 5.634 22 Si 0.777 3.223 23 H -0.203 1.203 24 H -0.238 1.238 25 H -0.228 1.228 26 C -0.009 4.009 27 N -0.244 5.244 28 H 0.123 0.877 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.114 0.886 32 H 0.143 0.857 33 H 0.152 0.848 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.057 0.943 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.082 0.918 41 H 0.053 0.947 42 H 0.083 0.917 43 H 0.220 0.780 44 H 0.203 0.797 45 H 0.047 0.953 46 H 0.072 0.928 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.526 18.050 -7.838 19.685 hybrid contribution 0.289 -1.666 1.055 1.993 sum -0.237 16.384 -6.782 17.734 Atomic orbital electron populations 1.20357 0.80395 1.05679 1.05674 1.26659 1.02186 0.82848 0.99214 1.74605 0.89635 1.24333 1.23061 1.85267 1.22323 1.24651 1.65890 1.28840 0.96812 0.81975 0.94149 1.19913 0.87789 0.98144 0.98845 1.21550 0.95379 1.02467 0.96815 1.20729 0.85822 0.80020 0.83447 1.90692 1.65587 1.57480 1.32604 1.47901 1.26316 1.52164 1.06246 1.22024 0.99803 0.96893 0.82990 1.21860 0.97233 0.96730 1.01030 1.21645 0.98256 1.00857 0.93979 1.20442 0.88843 0.89430 0.93069 1.22745 0.96371 0.96649 0.84936 1.86869 1.44985 1.74932 1.30854 1.42553 1.19471 1.56302 1.16543 1.19665 0.99619 1.17362 0.92355 0.89969 1.25131 0.97796 1.04239 1.00765 1.69767 1.09854 1.45079 1.38709 0.85449 0.76582 0.77375 0.82921 1.20312 1.23817 1.22779 1.21901 0.85432 0.92044 1.01507 1.72035 1.00662 1.30314 1.21392 0.87667 0.88465 0.87935 0.88619 0.85736 0.84765 0.88274 0.88637 0.88015 0.94264 0.87712 0.88003 0.91849 0.94701 0.91664 0.77998 0.79680 0.95290 0.92841 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.00 10.51 71.23 0.75 -0.25 16 2 C 0.16 4.09 8.22 138.46 1.14 5.23 16 3 N -0.41 -10.61 12.16 -60.30 -0.73 -11.35 16 4 O 0.07 1.88 11.31 74.91 0.85 2.73 16 5 C 0.20 5.30 7.77 88.38 0.69 5.98 16 6 C -0.01 -0.20 5.13 29.85 0.15 -0.04 16 7 C -0.12 -3.01 4.03 29.85 0.12 -2.89 16 8 C 0.51 17.65 7.70 87.66 0.67 18.33 16 9 O -0.58 -26.00 15.40 -3.04 -0.05 -26.05 16 10 N -0.60 -18.29 2.89 -818.96 -2.37 -20.65 16 11 C 0.10 2.15 6.34 86.36 0.55 2.70 16 12 C -0.13 -3.04 5.91 30.69 0.18 -2.85 16 13 C -0.11 -2.70 4.77 30.64 0.15 -2.56 16 14 C 0.17 5.97 0.68 3.67 0.00 5.97 16 15 C 0.07 2.29 6.09 71.98 0.44 2.73 16 16 O -0.57 -21.17 10.04 -148.98 -1.50 -22.67 16 17 N -0.71 -33.67 4.75 -303.06 -1.44 -35.10 16 18 C -0.16 -8.83 8.07 84.03 0.68 -8.15 16 19 H 0.08 4.80 5.25 -2.91 -0.02 4.78 16 20 C -0.09 -5.44 5.50 84.86 0.47 -4.98 16 21 N -0.98 -62.03 13.06 21.65 0.28 -61.74 16 22 Si 0.94 51.29 29.55 68.60 2.03 53.32 16 23 H -0.28 -14.75 7.11 99.48 0.71 -14.05 16 24 H -0.31 -17.25 7.11 99.48 0.71 -16.54 16 25 H -0.30 -16.11 7.11 99.48 0.71 -15.40 16 26 C 0.12 3.98 4.91 86.35 0.42 4.40 16 27 N -0.51 -14.89 11.55 -303.18 -3.50 -18.39 16 28 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.10 3.06 8.10 -2.39 -0.02 3.04 16 32 H 0.12 2.83 8.10 -2.38 -0.02 2.81 16 33 H 0.13 2.20 7.94 -2.38 -0.02 2.18 16 34 H 0.10 2.56 7.69 -2.39 -0.02 2.54 16 35 H 0.10 1.63 5.93 -2.39 -0.01 1.62 16 36 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.04 1.27 6.75 -2.39 -0.02 1.25 16 38 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.37 9.99 9.12 -74.06 -0.68 9.32 16 44 H 0.37 19.14 6.43 -92.71 -0.60 18.54 16 45 H 0.24 15.01 8.31 -92.71 -0.77 14.24 16 46 H 0.05 2.41 5.82 -2.39 -0.01 2.40 16 47 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -84.19 378.51 -0.27 -84.46 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: -0.25 Total: 31.82 kcal Atomic # 6 Polarization: 17.22 SS G_CDS: 6.41 Total: 23.62 kcal Atomic # 7 Polarization: -139.48 SS G_CDS: -7.76 Total: -147.24 kcal Atomic # 8 Polarization: -45.29 SS G_CDS: -0.70 Total: -45.99 kcal Atomic # 14 Polarization: 51.29 SS G_CDS: 2.03 Total: 53.32 kcal Total: -84.19 -0.27 -84.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484844523.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.472 kcal (2) G-P(sol) polarization free energy of solvation -84.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds