Wall clock time and date at job start Tue Mar 31 2020 22:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30280 * 126.27781 * 2 1 4 4 N 1.28674 * 109.37684 * 180.02562 * 3 2 1 5 5 C 1.30279 * 109.37909 * 359.97438 * 4 3 2 6 6 C 1.50705 * 126.27918 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47262 * 90.02451 * 6 5 4 8 8 O 1.21286 * 119.99587 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00059 * 179.97438 * 7 6 5 10 10 C 1.46926 * 120.63141 * 0.02562 * 9 7 6 11 11 C 1.53192 * 108.77362 * 233.62672 * 10 9 7 12 12 C 1.53035 * 109.31574 * 305.36524 * 11 10 9 13 13 C 1.53040 * 109.52945 * 61.37079 * 12 11 10 14 14 H 1.08995 * 109.49771 * 58.57791 * 13 12 11 15 15 N 1.46497 * 109.49905 * 178.68168 * 13 12 11 16 16 C 1.36931 * 120.00308 * 59.99670 * 15 13 12 17 17 H 1.07996 * 120.00073 * 326.14671 * 16 15 13 18 18 C 1.38814 * 120.00179 * 146.14397 * 16 15 13 19 19 N 1.31618 * 119.99689 * 337.67058 * 18 16 15 20 20 Si 1.86795 * 120.00237 * 157.66226 * 18 16 15 21 21 H 1.48501 * 109.47034 * 90.00117 * 20 18 16 22 22 H 1.48499 * 109.47148 * 210.00023 * 20 18 16 23 23 H 1.48502 * 109.47203 * 330.00348 * 20 18 16 24 24 C 1.46504 * 119.99812 * 239.99998 * 15 13 12 25 25 C 1.52998 * 109.47064 * 84.43334 * 24 15 13 26 26 O 1.42901 * 109.47135 * 65.00261 * 25 24 15 27 27 C 1.46930 * 120.63071 * 180.02562 * 9 7 6 28 28 O 1.34359 * 126.28278 * 180.29226 * 2 1 3 29 29 H 1.08996 * 109.46981 * 90.02248 * 1 2 3 30 30 H 1.08997 * 109.46902 * 210.02231 * 1 2 3 31 31 H 1.09003 * 109.46979 * 330.02671 * 1 2 3 32 32 H 1.08998 * 109.46822 * 330.02437 * 6 5 4 33 33 H 1.08992 * 109.46726 * 210.02559 * 6 5 4 34 34 H 1.08997 * 109.59070 * 113.83947 * 10 9 7 35 35 H 1.08998 * 109.58595 * 353.41675 * 10 9 7 36 36 H 1.09001 * 109.49280 * 185.40700 * 11 10 9 37 37 H 1.09000 * 109.52271 * 65.33170 * 11 10 9 38 38 H 1.09000 * 109.45984 * 181.38901 * 12 11 10 39 39 H 1.09008 * 109.45871 * 301.35887 * 12 11 10 40 40 H 0.97003 * 119.99915 * 179.97438 * 19 18 16 41 41 H 1.08992 * 109.47237 * 204.43548 * 24 15 13 42 42 H 1.09002 * 109.47067 * 324.44083 * 24 15 13 43 43 H 1.09001 * 109.46897 * 185.00197 * 25 24 15 44 44 H 1.09006 * 109.47596 * 305.00185 * 25 24 15 45 45 H 0.96697 * 114.00195 * 179.97438 * 26 25 24 46 46 H 1.09003 * 109.58580 * 246.16259 * 27 9 7 47 47 H 1.09004 * 109.58650 * 6.58150 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0503 0.0000 4 7 3.5090 0.6762 -0.0005 5 6 3.5654 -0.6254 -0.0004 6 6 4.8177 -1.4638 -0.0014 7 6 5.2361 -1.7435 1.4191 8 8 4.5821 -1.3048 2.3414 9 7 6.3371 -2.4811 1.6644 10 6 7.1399 -3.0189 0.5576 11 6 7.2975 -4.5302 0.7518 12 6 7.8787 -4.8042 2.1407 13 6 6.9189 -4.2774 3.2100 14 1 5.9487 -4.7614 3.0982 15 7 7.4608 -4.5680 4.5396 16 6 8.6777 -4.0603 4.9090 17 1 9.4590 -3.9410 4.1730 18 6 8.9072 -3.6987 6.2294 19 7 7.8933 -3.4198 7.0209 20 14 10.6547 -3.6083 6.8830 21 1 11.1907 -2.2391 6.6751 22 1 10.6578 -3.9262 8.3335 23 1 11.5050 -4.5877 6.1597 24 6 6.7009 -5.4019 5.4742 25 6 6.9814 -6.8779 5.1847 26 8 8.3553 -7.1635 5.4545 27 6 6.7574 -2.7628 3.0439 28 8 2.3021 -1.0831 -0.0055 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3633 0.8903 0.5134 32 1 5.6143 -0.9262 -0.5157 33 1 4.6241 -2.4053 -0.5152 34 1 8.1221 -2.5463 0.5553 35 1 6.6355 -2.8226 -0.3886 36 1 7.9703 -4.9265 -0.0088 37 1 6.3240 -5.0124 0.6632 38 1 8.0150 -5.8776 2.2721 39 1 8.8411 -4.3015 2.2373 40 1 8.0535 -3.1675 7.9438 41 1 7.0008 -5.1687 6.4957 42 1 5.6357 -5.2042 5.3540 43 1 6.3497 -7.4991 5.8196 44 1 6.7649 -7.0904 4.1376 45 1 8.6049 -8.0836 5.2928 46 1 7.7085 -2.2693 3.2440 47 1 6.0006 -2.3975 3.7382 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489158628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:32 Heat of formation + Delta-G solvation = -15.985579 kcal Electronic energy + Delta-G solvation = -30373.154090 eV Core-core repulsion = 26173.269780 eV Total energy + Delta-G solvation = -4199.884310 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.30061 -40.01474 -37.62001 -36.23411 -36.22444 -34.68014 -33.74877 -32.38988 -31.35462 -31.06852 -29.59619 -27.65822 -27.09949 -25.00867 -24.13560 -23.00180 -22.59118 -22.38168 -20.78309 -19.90566 -18.87446 -17.78351 -17.23249 -16.84792 -16.58467 -16.43341 -15.81902 -15.45970 -14.97670 -14.65888 -14.57442 -14.32060 -14.00498 -13.69820 -13.64868 -13.51164 -13.17999 -13.06790 -12.99711 -12.63033 -12.56939 -12.44701 -12.20385 -11.97078 -11.90812 -11.40762 -11.24617 -11.05210 -10.89002 -10.77223 -10.65632 -10.50012 -10.16428 -10.07730 -9.89411 -9.88407 -9.59787 -9.44652 -9.11179 -8.44650 -8.30023 -6.58986 -5.73014 -3.24444 1.01831 2.06557 2.28685 2.66133 3.15767 3.43293 3.50935 3.55968 3.63926 4.19072 4.40099 4.54947 4.57693 4.81823 4.88010 4.95074 5.05111 5.11072 5.19963 5.21760 5.27891 5.33809 5.37076 5.43448 5.48380 5.60239 5.65175 5.77667 5.87736 6.00819 6.05315 6.12249 6.25204 6.27995 6.48870 6.58444 6.63366 6.69869 6.81975 7.02767 7.04161 7.59290 7.69610 7.86866 8.21482 8.25537 8.43220 8.60547 9.21629 9.87428 10.39860 11.29803 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016034 B = 0.002811 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.872005 B = 9959.807927 C =10205.747992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.160 3.840 3 N -0.288 5.288 4 N -0.275 5.275 5 C 0.189 3.811 6 C -0.047 4.047 7 C 0.514 3.486 8 O -0.532 6.532 9 N -0.601 5.601 10 C 0.104 3.896 11 C -0.132 4.132 12 C -0.127 4.127 13 C 0.166 3.834 14 H 0.048 0.952 15 N -0.567 5.567 16 C -0.241 4.241 17 H 0.060 0.940 18 C 0.015 3.985 19 N -0.891 5.891 20 Si 0.899 3.101 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.141 3.859 25 C 0.061 3.939 26 O -0.543 6.543 27 C 0.107 3.893 28 O -0.221 6.221 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.139 0.861 33 H 0.125 0.875 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.253 0.747 41 H 0.109 0.891 42 H 0.036 0.964 43 H 0.020 0.980 44 H 0.021 0.979 45 H 0.349 0.651 46 H 0.079 0.921 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.496 -2.646 -17.521 20.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.051 4.051 3 N -0.136 5.136 4 N -0.122 5.122 5 C -0.022 4.022 6 C -0.088 4.088 7 C 0.299 3.701 8 O -0.409 6.409 9 N -0.334 5.334 10 C -0.019 4.019 11 C -0.171 4.171 12 C -0.166 4.166 13 C 0.057 3.943 14 H 0.066 0.934 15 N -0.286 5.286 16 C -0.371 4.371 17 H 0.077 0.923 18 C -0.185 4.185 19 N -0.534 5.534 20 Si 0.729 3.271 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.204 1.204 24 C 0.014 3.986 25 C -0.019 4.019 26 O -0.344 6.344 27 C -0.016 4.016 28 O -0.100 6.100 29 H 0.116 0.884 30 H 0.112 0.888 31 H 0.125 0.875 32 H 0.157 0.843 33 H 0.143 0.857 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.127 0.873 42 H 0.054 0.946 43 H 0.038 0.962 44 H 0.039 0.961 45 H 0.192 0.808 46 H 0.097 0.903 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.475 -0.465 -16.649 19.162 hybrid contribution 0.577 -1.923 0.239 2.022 sum -8.898 -2.389 -16.410 18.819 Atomic orbital electron populations 1.20341 0.80229 1.05850 1.05016 1.27960 0.97800 0.79642 0.99666 1.74371 0.96036 1.25643 1.17558 1.74360 1.12227 1.08955 1.16627 1.26933 0.84666 0.91276 0.99369 1.20214 0.89825 1.00165 0.98631 1.19906 0.81323 0.79331 0.89574 1.90779 1.53290 1.51086 1.45726 1.48296 1.25335 1.50717 1.09077 1.21817 0.96227 0.95099 0.88755 1.21936 1.01417 0.94668 0.99100 1.21986 1.00600 1.01310 0.92734 1.20650 0.94403 0.91796 0.87404 0.93351 1.43710 1.19799 1.54487 1.10591 1.18774 0.88321 1.36399 0.93574 0.92288 1.24988 0.96779 0.98338 0.98366 1.69971 1.29598 1.47030 1.06773 0.86379 0.85296 0.77405 0.78050 1.21762 1.21764 1.20430 1.21088 0.92733 0.85137 0.99613 1.23065 0.82156 1.00412 0.96317 1.86856 1.26910 1.29975 1.90698 1.22458 1.01448 0.98739 0.78953 1.84741 1.17426 1.38321 1.69536 0.88419 0.88837 0.87523 0.84318 0.85658 0.90786 0.90580 0.91186 0.92082 0.92236 0.91429 0.93681 0.87324 0.94621 0.96222 0.96093 0.80840 0.90274 0.89385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.36 10.51 36.01 0.38 0.02 16 2 C 0.16 1.98 8.48 -12.94 -0.11 1.87 16 3 N -0.29 -4.46 12.22 32.55 0.40 -4.06 16 4 N -0.28 -4.52 12.22 32.55 0.40 -4.13 16 5 C 0.19 2.69 6.97 -12.94 -0.09 2.60 16 6 C -0.05 -0.51 4.67 -29.03 -0.14 -0.65 16 7 C 0.51 8.14 7.69 -10.99 -0.08 8.05 16 8 O -0.53 -11.21 15.45 5.55 0.09 -11.12 16 9 N -0.60 -9.12 2.97 -172.74 -0.51 -9.63 16 10 C 0.10 1.12 6.34 -3.71 -0.02 1.10 16 11 C -0.13 -1.51 6.08 -26.61 -0.16 -1.67 16 12 C -0.13 -2.04 5.11 -26.69 -0.14 -2.18 16 13 C 0.17 3.21 2.78 -67.80 -0.19 3.02 16 14 H 0.05 0.93 7.87 -51.93 -0.41 0.52 16 15 N -0.57 -13.24 2.35 -165.51 -0.39 -13.63 16 16 C -0.24 -6.28 7.94 -15.06 -0.12 -6.40 16 17 H 0.06 1.54 6.86 -52.49 -0.36 1.18 16 18 C 0.01 0.40 4.91 -17.43 -0.09 0.32 16 19 N -0.89 -25.59 11.34 55.49 0.63 -24.96 16 20 Si 0.90 22.09 29.61 -169.99 -5.03 17.05 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 C 0.14 3.24 5.57 -4.04 -0.02 3.22 16 25 C 0.06 1.17 7.39 37.16 0.27 1.45 16 26 O -0.54 -11.10 13.40 -35.23 -0.47 -11.57 16 27 C 0.11 2.10 5.76 -3.69 -0.02 2.08 16 28 O -0.22 -3.00 10.87 5.40 0.06 -2.94 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.14 1.12 7.94 -51.93 -0.41 0.71 16 33 H 0.13 0.90 7.69 -51.93 -0.40 0.51 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.53 5.93 -51.93 -0.31 0.22 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 1.19 7.03 -51.92 -0.36 0.82 16 40 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.11 2.92 5.34 -51.93 -0.28 2.64 16 42 H 0.04 0.79 8.04 -51.93 -0.42 0.37 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.35 5.14 9.12 45.56 0.42 5.56 16 46 H 0.08 1.71 7.50 -51.93 -0.39 1.32 16 47 H 0.09 2.06 7.01 -51.93 -0.36 1.69 16 LS Contribution 383.91 15.07 5.79 5.79 Total: -1.00 -36.81 383.91 -5.81 -42.62 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -6.23 Total: 3.76 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: -0.53 Total: 12.83 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: 0.52 Total: -56.41 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.33 Total: -25.64 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.81 -5.81 -42.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489158628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.631 kcal (2) G-P(sol) polarization free energy of solvation -36.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds