Wall clock time and date at job start Tue Mar 31 2020 22:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30280 * 126.27781 * 2 1 4 4 N 1.28674 * 109.37684 * 180.02562 * 3 2 1 5 5 C 1.30279 * 109.37909 * 359.97438 * 4 3 2 6 6 C 1.50705 * 126.27918 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47262 * 90.02451 * 6 5 4 8 8 O 1.21286 * 119.99587 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00059 * 179.97438 * 7 6 5 10 10 C 1.46926 * 120.63141 * 0.02562 * 9 7 6 11 11 C 1.53192 * 108.77362 * 233.62672 * 10 9 7 12 12 C 1.53035 * 109.31574 * 305.36524 * 11 10 9 13 13 C 1.53040 * 109.52945 * 61.37079 * 12 11 10 14 14 H 1.08995 * 109.49771 * 58.57791 * 13 12 11 15 15 N 1.46497 * 109.49905 * 178.68168 * 13 12 11 16 16 C 1.36931 * 120.00308 * 59.99670 * 15 13 12 17 17 H 1.07996 * 120.00073 * 326.14671 * 16 15 13 18 18 C 1.38814 * 120.00179 * 146.14397 * 16 15 13 19 19 N 1.31618 * 119.99689 * 337.67058 * 18 16 15 20 20 Si 1.86795 * 120.00237 * 157.66226 * 18 16 15 21 21 H 1.48501 * 109.47034 * 90.00117 * 20 18 16 22 22 H 1.48499 * 109.47148 * 210.00023 * 20 18 16 23 23 H 1.48502 * 109.47203 * 330.00348 * 20 18 16 24 24 C 1.46504 * 119.99812 * 239.99998 * 15 13 12 25 25 C 1.52998 * 109.47064 * 84.43334 * 24 15 13 26 26 O 1.42901 * 109.47135 * 65.00261 * 25 24 15 27 27 C 1.46930 * 120.63071 * 180.02562 * 9 7 6 28 28 O 1.34359 * 126.28278 * 180.29226 * 2 1 3 29 29 H 1.08996 * 109.46981 * 90.02248 * 1 2 3 30 30 H 1.08997 * 109.46902 * 210.02231 * 1 2 3 31 31 H 1.09003 * 109.46979 * 330.02671 * 1 2 3 32 32 H 1.08998 * 109.46822 * 330.02437 * 6 5 4 33 33 H 1.08992 * 109.46726 * 210.02559 * 6 5 4 34 34 H 1.08997 * 109.59070 * 113.83947 * 10 9 7 35 35 H 1.08998 * 109.58595 * 353.41675 * 10 9 7 36 36 H 1.09001 * 109.49280 * 185.40700 * 11 10 9 37 37 H 1.09000 * 109.52271 * 65.33170 * 11 10 9 38 38 H 1.09000 * 109.45984 * 181.38901 * 12 11 10 39 39 H 1.09008 * 109.45871 * 301.35887 * 12 11 10 40 40 H 0.97003 * 119.99915 * 179.97438 * 19 18 16 41 41 H 1.08992 * 109.47237 * 204.43548 * 24 15 13 42 42 H 1.09002 * 109.47067 * 324.44083 * 24 15 13 43 43 H 1.09001 * 109.46897 * 185.00197 * 25 24 15 44 44 H 1.09006 * 109.47596 * 305.00185 * 25 24 15 45 45 H 0.96697 * 114.00195 * 179.97438 * 26 25 24 46 46 H 1.09003 * 109.58580 * 246.16259 * 27 9 7 47 47 H 1.09004 * 109.58650 * 6.58150 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0503 0.0000 4 7 3.5090 0.6762 -0.0005 5 6 3.5654 -0.6254 -0.0004 6 6 4.8177 -1.4638 -0.0014 7 6 5.2361 -1.7435 1.4191 8 8 4.5821 -1.3048 2.3414 9 7 6.3371 -2.4811 1.6644 10 6 7.1399 -3.0189 0.5576 11 6 7.2975 -4.5302 0.7518 12 6 7.8787 -4.8042 2.1407 13 6 6.9189 -4.2774 3.2100 14 1 5.9487 -4.7614 3.0982 15 7 7.4608 -4.5680 4.5396 16 6 8.6777 -4.0603 4.9090 17 1 9.4590 -3.9410 4.1730 18 6 8.9072 -3.6987 6.2294 19 7 7.8933 -3.4198 7.0209 20 14 10.6547 -3.6083 6.8830 21 1 11.1907 -2.2391 6.6751 22 1 10.6578 -3.9262 8.3335 23 1 11.5050 -4.5877 6.1597 24 6 6.7009 -5.4019 5.4742 25 6 6.9814 -6.8779 5.1847 26 8 8.3553 -7.1635 5.4545 27 6 6.7574 -2.7628 3.0439 28 8 2.3021 -1.0831 -0.0055 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3633 0.8903 0.5134 32 1 5.6143 -0.9262 -0.5157 33 1 4.6241 -2.4053 -0.5152 34 1 8.1221 -2.5463 0.5553 35 1 6.6355 -2.8226 -0.3886 36 1 7.9703 -4.9265 -0.0088 37 1 6.3240 -5.0124 0.6632 38 1 8.0150 -5.8776 2.2721 39 1 8.8411 -4.3015 2.2373 40 1 8.0535 -3.1675 7.9438 41 1 7.0008 -5.1687 6.4957 42 1 5.6357 -5.2042 5.3540 43 1 6.3497 -7.4991 5.8196 44 1 6.7649 -7.0904 4.1376 45 1 8.6049 -8.0836 5.2928 46 1 7.7085 -2.2693 3.2440 47 1 6.0006 -2.3975 3.7382 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489158628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:31 Heat of formation + Delta-G solvation = -49.032754 kcal Electronic energy + Delta-G solvation = -30374.587123 eV Core-core repulsion = 26173.269780 eV Total energy + Delta-G solvation = -4201.317343 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.30194 -41.29173 -39.11319 -37.72428 -37.26736 -36.29271 -34.72582 -33.87793 -32.84837 -32.13374 -31.00487 -29.13749 -28.31253 -26.25145 -25.92072 -24.09907 -23.73486 -23.49362 -22.22790 -21.54903 -20.10993 -18.85783 -18.37620 -18.20361 -18.18835 -17.83814 -17.02026 -16.83606 -16.51114 -16.11544 -15.80325 -15.51587 -15.30187 -15.16298 -14.97401 -14.66074 -14.18898 -14.12410 -14.06179 -13.94872 -13.59582 -13.50438 -13.42195 -13.33072 -13.09278 -12.98116 -12.94282 -12.74486 -12.46547 -12.22321 -12.04584 -11.89639 -11.77467 -11.67106 -11.60006 -11.26383 -11.12816 -10.65052 -10.51306 -10.41589 -9.67957 -8.53014 -7.76733 -5.30039 0.04741 1.15176 1.27589 1.44349 1.46961 1.48726 1.57462 1.99186 2.56625 2.76895 3.33871 3.35940 3.40472 3.57053 3.79399 3.80134 4.05561 4.10087 4.11543 4.18404 4.33064 4.34208 4.38196 4.48113 4.50889 4.53841 4.56432 4.67953 4.70036 4.70495 4.81559 4.93633 4.95175 5.01490 5.03378 5.03607 5.13313 5.25394 5.49244 5.50649 5.64182 5.74532 5.81840 6.39114 6.50914 7.04100 7.19191 7.19350 7.25475 7.93715 8.42033 9.22319 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016034 B = 0.002811 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.872005 B = 9959.807927 C =10205.747992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.170 3.830 3 N -0.332 5.332 4 N -0.313 5.313 5 C 0.181 3.819 6 C -0.034 4.034 7 C 0.509 3.491 8 O -0.597 6.597 9 N -0.597 5.597 10 C 0.096 3.904 11 C -0.123 4.123 12 C -0.117 4.117 13 C 0.166 3.834 14 H 0.050 0.950 15 N -0.582 5.582 16 C -0.224 4.224 17 H 0.058 0.942 18 C -0.042 4.042 19 N -0.926 5.926 20 Si 0.950 3.050 21 H -0.290 1.290 22 H -0.300 1.300 23 H -0.273 1.273 24 C 0.134 3.866 25 C 0.074 3.926 26 O -0.573 6.573 27 C 0.123 3.877 28 O -0.228 6.228 29 H 0.128 0.872 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.175 0.825 33 H 0.176 0.824 34 H 0.080 0.920 35 H 0.131 0.869 36 H 0.107 0.893 37 H 0.073 0.927 38 H 0.055 0.945 39 H 0.049 0.951 40 H 0.245 0.755 41 H 0.070 0.930 42 H 0.033 0.967 43 H 0.044 0.956 44 H 0.041 0.959 45 H 0.375 0.625 46 H 0.051 0.949 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.755 -4.527 -21.555 24.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.041 4.041 3 N -0.179 5.179 4 N -0.159 5.159 5 C -0.031 4.031 6 C -0.074 4.074 7 C 0.296 3.704 8 O -0.478 6.478 9 N -0.329 5.329 10 C -0.025 4.025 11 C -0.161 4.161 12 C -0.156 4.156 13 C 0.059 3.941 14 H 0.069 0.931 15 N -0.302 5.302 16 C -0.355 4.355 17 H 0.076 0.924 18 C -0.237 4.237 19 N -0.572 5.572 20 Si 0.780 3.220 21 H -0.217 1.217 22 H -0.227 1.227 23 H -0.198 1.198 24 C 0.008 3.992 25 C -0.006 4.006 26 O -0.378 6.378 27 C -0.002 4.002 28 O -0.107 6.107 29 H 0.146 0.854 30 H 0.129 0.871 31 H 0.134 0.866 32 H 0.192 0.808 33 H 0.193 0.807 34 H 0.098 0.902 35 H 0.149 0.851 36 H 0.125 0.875 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.087 0.913 42 H 0.052 0.948 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.222 0.778 46 H 0.070 0.930 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -9.704 -2.371 -20.760 23.039 hybrid contribution 0.562 -1.359 1.453 2.068 sum -9.142 -3.730 -19.307 21.685 Atomic orbital electron populations 1.20739 0.76311 1.07089 1.07314 1.29110 0.99561 0.78718 0.96704 1.74287 0.96295 1.27218 1.20054 1.74255 1.13159 1.10456 1.18005 1.27505 0.85752 0.91139 0.98719 1.20429 0.89401 1.02587 0.95026 1.20793 0.80413 0.77928 0.91236 1.90759 1.55318 1.53467 1.48299 1.48293 1.25755 1.50632 1.08204 1.22273 0.96670 0.94537 0.89024 1.21914 1.02549 0.95202 0.96436 1.21826 0.98830 1.00426 0.94552 1.20817 0.95402 0.91371 0.86536 0.93140 1.43918 1.19360 1.54926 1.11987 1.18937 0.89333 1.33962 0.93221 0.92401 1.25596 0.99302 0.99702 0.99122 1.70122 1.31015 1.49570 1.06478 0.85548 0.82234 0.77292 0.76916 1.21682 1.22687 1.19797 1.21008 0.92495 0.88003 0.97721 1.22777 0.82265 0.97660 0.97906 1.86768 1.27415 1.32598 1.91013 1.21867 0.98316 0.98656 0.81351 1.84761 1.17495 1.38714 1.69773 0.85354 0.87139 0.86605 0.80794 0.80672 0.90184 0.85094 0.87513 0.90832 0.92613 0.93253 0.94625 0.91255 0.94840 0.93828 0.94101 0.77819 0.93019 0.94349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.60 10.51 71.24 0.75 0.15 16 2 C 0.17 4.01 8.48 88.34 0.75 4.75 16 3 N -0.33 -10.25 12.22 -165.50 -2.02 -12.27 16 4 N -0.31 -10.23 12.22 -165.49 -2.02 -12.25 16 5 C 0.18 4.88 6.97 88.34 0.62 5.50 16 6 C -0.03 -0.62 4.67 29.10 0.14 -0.49 16 7 C 0.51 15.54 7.69 87.66 0.67 16.22 16 8 O -0.60 -26.08 15.45 -3.05 -0.05 -26.13 16 9 N -0.60 -17.25 2.97 -818.83 -2.43 -19.68 16 10 C 0.10 1.62 6.34 86.36 0.55 2.17 16 11 C -0.12 -2.20 6.08 30.67 0.19 -2.01 16 12 C -0.12 -3.51 5.11 30.62 0.16 -3.36 16 13 C 0.17 6.44 2.78 45.08 0.13 6.56 16 14 H 0.05 1.92 7.87 -2.39 -0.02 1.90 16 15 N -0.58 -27.84 2.35 -677.56 -1.59 -29.44 16 16 C -0.22 -11.96 7.94 84.04 0.67 -11.29 16 17 H 0.06 3.06 6.86 -2.91 -0.02 3.04 16 18 C -0.04 -2.37 4.91 84.86 0.42 -1.95 16 19 N -0.93 -56.09 11.34 21.65 0.25 -55.85 16 20 Si 0.95 46.78 29.61 68.60 2.03 48.81 16 21 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 22 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 23 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 24 C 0.13 6.35 5.57 86.38 0.48 6.83 16 25 C 0.07 2.75 7.39 71.98 0.53 3.29 16 26 O -0.57 -22.75 13.40 -148.98 -2.00 -24.75 16 27 C 0.12 5.02 5.76 86.37 0.50 5.51 16 28 O -0.23 -5.82 10.87 -3.60 -0.04 -5.86 16 29 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.17 1.94 7.94 -2.39 -0.02 1.93 16 33 H 0.18 1.42 7.69 -2.39 -0.02 1.40 16 34 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.13 0.88 5.93 -2.39 -0.01 0.86 16 36 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.05 1.66 7.03 -2.38 -0.02 1.64 16 40 H 0.24 14.59 8.31 -92.71 -0.77 13.82 16 41 H 0.07 3.91 5.34 -2.39 -0.01 3.89 16 42 H 0.03 1.54 8.04 -2.39 -0.02 1.52 16 43 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.04 1.36 8.14 -2.38 -0.02 1.35 16 45 H 0.38 10.26 9.12 -74.06 -0.68 9.59 16 46 H 0.05 2.35 7.50 -2.39 -0.02 2.33 16 47 H 0.04 1.93 7.01 -2.39 -0.02 1.91 16 Total: -1.00 -90.02 383.91 -1.02 -91.04 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 0.33 Total: 14.50 kcal Atomic # 6 Polarization: 25.35 SS G_CDS: 6.54 Total: 31.88 kcal Atomic # 7 Polarization: -121.66 SS G_CDS: -7.83 Total: -129.49 kcal Atomic # 8 Polarization: -54.65 SS G_CDS: -2.08 Total: -56.74 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -90.02 -1.02 -91.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489158628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.004 kcal (2) G-P(sol) polarization free energy of solvation -90.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds