Wall clock time and date at job start Tue Mar 31 2020 22:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46869 * 2 1 4 4 C 1.50690 * 110.43657 * 305.57008 * 3 2 1 5 5 O 1.21285 * 120.00171 * 124.96702 * 4 3 2 6 6 N 1.34779 * 120.00241 * 304.97263 * 4 3 2 7 7 C 1.46500 * 120.00335 * 174.83245 * 6 4 3 8 8 C 1.53937 * 113.73688 * 252.00590 * 7 6 4 9 9 N 1.47964 * 86.17867 * 221.91903 * 8 7 6 10 10 C 1.46904 * 110.99967 * 137.57860 * 9 8 7 11 11 C 1.50699 * 109.46654 * 90.63921 * 10 9 8 12 12 O 1.21291 * 120.00332 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99560 * 180.02562 * 11 10 9 14 14 C 1.37093 * 119.99707 * 180.02562 * 13 11 10 15 15 H 1.08008 * 120.00538 * 359.97438 * 14 13 11 16 16 C 1.38956 * 119.99967 * 179.97438 * 14 13 11 17 17 N 1.31407 * 119.99652 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00050 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47167 * 59.99927 * 18 16 14 20 20 H 1.48499 * 109.47031 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47114 * 300.00289 * 18 16 14 22 22 C 1.47962 * 90.76281 * 24.68810 * 9 8 7 23 23 C 1.54635 * 110.48559 * 183.02793 * 3 2 1 24 24 C 1.54479 * 101.76594 * 216.39182 * 23 3 2 25 25 N 1.46773 * 105.47248 * 25.41776 * 24 23 3 26 26 C 1.34738 * 111.34844 * 343.01638 * 25 24 23 27 27 O 1.21286 * 125.11941 * 180.38705 * 26 25 24 28 28 H 1.09007 * 109.46904 * 174.90708 * 1 2 3 29 29 H 1.08995 * 109.47469 * 294.90899 * 1 2 3 30 30 H 1.08996 * 109.47323 * 54.91118 * 1 2 3 31 31 H 1.08995 * 109.47719 * 240.00141 * 2 1 3 32 32 H 1.08998 * 109.47384 * 119.99660 * 2 1 3 33 33 H 0.96998 * 119.99703 * 355.11241 * 6 4 3 34 34 H 1.08999 * 112.93515 * 23.70726 * 7 6 4 35 35 H 1.09000 * 113.75490 * 336.23439 * 8 7 6 36 36 H 1.08991 * 113.76187 * 107.60136 * 8 7 6 37 37 H 1.08991 * 109.47095 * 210.63703 * 10 9 8 38 38 H 1.08997 * 109.47033 * 330.64161 * 10 9 8 39 39 H 0.96993 * 119.99836 * 359.97438 * 13 11 10 40 40 H 0.97002 * 119.99942 * 180.02562 * 17 16 14 41 41 H 1.09007 * 113.75674 * 220.99450 * 22 9 8 42 42 H 1.08999 * 113.76360 * 89.62866 * 22 9 8 43 43 H 1.08994 * 110.96649 * 334.51349 * 23 3 2 44 44 H 1.08995 * 110.96582 * 98.27220 * 23 3 2 45 45 H 1.08994 * 110.24525 * 144.41350 * 24 23 3 46 46 H 1.08998 * 110.24488 * 266.33211 * 24 23 3 47 47 H 0.96994 * 124.34595 * 162.98020 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.4409 2.2124 -1.1486 5 8 0.8429 3.2467 -0.9392 6 7 1.5694 1.7517 -2.4086 7 6 0.8922 2.4374 -3.5120 8 6 -0.3058 1.6580 -4.0839 9 7 0.1904 2.0677 -5.4163 10 6 0.1180 0.9531 -6.3705 11 6 -1.2141 0.9804 -7.0745 12 8 -2.0238 1.8431 -6.8073 13 7 -1.5062 0.0455 -8.0004 14 6 -2.7179 0.0707 -8.6413 15 1 -3.4386 0.8394 -8.4040 16 6 -3.0189 -0.8928 -9.5962 17 7 -2.1423 -1.8283 -9.8846 18 14 -4.6702 -0.8590 -10.4689 19 1 -4.8190 0.4266 -11.1971 20 1 -4.7436 -1.9860 -11.4331 21 1 -5.7608 -0.9910 -9.4699 22 6 1.5615 2.2192 -4.8810 23 6 3.5841 1.4707 -0.0765 24 6 3.9223 2.6776 0.8264 25 7 2.7937 2.7990 1.7568 26 6 1.7184 2.1178 1.3150 27 8 0.6498 2.0547 1.8853 28 1 -0.3633 -1.0237 -0.0912 29 1 -0.3634 0.4328 0.9320 30 1 -0.3634 0.5907 -0.8409 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.1069 0.9636 -2.5844 34 1 0.6733 3.4823 -3.2922 35 1 -0.2551 0.5836 -3.9077 36 1 -1.2733 2.0876 -3.8245 37 1 0.9185 1.0501 -7.1038 38 1 0.2272 0.0095 -5.8360 39 1 -0.8589 -0.6445 -8.2138 40 1 -2.3522 -2.5007 -10.5515 41 1 2.0857 3.0972 -5.2584 42 1 2.1583 1.3089 -4.9379 43 1 4.0113 0.5516 0.3245 44 1 3.9209 1.6419 -1.0989 45 1 4.8452 2.4910 1.3754 46 1 4.0173 3.5826 0.2264 47 1 2.8185 3.3044 2.5843 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494400862.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:20 Heat of formation + Delta-G solvation = -65.061833 kcal Electronic energy + Delta-G solvation = -29722.164967 eV Core-core repulsion = 25520.152551 eV Total energy + Delta-G solvation = -4202.012416 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.72171 -40.21939 -38.68272 -37.64397 -36.72415 -35.01013 -34.02193 -33.67328 -31.25258 -30.56265 -29.71963 -27.85382 -26.13565 -25.59106 -23.97484 -23.27343 -22.82636 -21.78383 -20.42921 -19.43792 -19.22766 -17.93831 -17.87712 -17.56606 -16.73644 -16.16783 -15.87009 -15.73060 -15.28902 -15.00755 -14.74965 -14.62611 -14.36291 -14.02840 -13.96973 -13.74494 -13.61107 -13.42568 -13.21138 -12.96617 -12.81842 -12.67877 -12.24374 -12.18026 -12.06078 -11.62321 -11.56612 -11.51982 -11.30537 -11.22566 -11.03882 -10.69989 -10.42940 -10.19967 -10.13541 -9.92059 -9.49979 -9.47828 -9.27588 -8.79848 -8.19797 -7.94829 -6.40513 -3.81020 2.09599 2.25460 2.79543 3.04771 3.21497 3.26684 3.31651 3.65362 3.84713 3.88090 3.93245 4.08492 4.20615 4.37171 4.41554 4.49167 4.67238 4.78312 4.88793 4.95997 4.97208 5.07523 5.15463 5.19120 5.28229 5.29088 5.31976 5.38355 5.56792 5.64145 5.66151 5.68931 5.80393 5.85123 6.05887 6.19235 6.22275 6.28561 6.37461 6.51840 6.61531 7.06391 7.16468 7.56453 7.86718 7.91707 8.07244 8.63578 9.19981 9.55751 10.08460 10.77344 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024524 B = 0.002087 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.449669 B =13412.516685 C =13691.118881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.096 4.096 3 C -0.120 4.120 4 C 0.542 3.458 5 O -0.522 6.522 6 N -0.716 5.716 7 C 0.117 3.883 8 C -0.001 4.001 9 N -0.444 5.444 10 C 0.013 3.987 11 C 0.445 3.555 12 O -0.573 6.573 13 N -0.567 5.567 14 C -0.298 4.298 15 H 0.102 0.898 16 C 0.022 3.978 17 N -0.904 5.904 18 Si 0.930 3.070 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.007 4.007 23 C -0.125 4.125 24 C 0.101 3.899 25 N -0.732 5.732 26 C 0.550 3.450 27 O -0.507 6.507 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.400 0.600 34 H 0.126 0.874 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.058 0.942 39 H 0.391 0.609 40 H 0.271 0.729 41 H 0.097 0.903 42 H 0.072 0.928 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.085 0.915 46 H 0.074 0.926 47 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.037 1.554 20.211 28.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.134 4.134 3 C -0.127 4.127 4 C 0.326 3.674 5 O -0.397 6.397 6 N -0.367 5.367 7 C 0.012 3.988 8 C -0.131 4.131 9 N -0.166 5.166 10 C -0.119 4.119 11 C 0.230 3.770 12 O -0.456 6.456 13 N -0.204 5.204 14 C -0.427 4.427 15 H 0.120 0.880 16 C -0.180 4.180 17 N -0.546 5.546 18 Si 0.757 3.243 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.137 4.137 23 C -0.163 4.163 24 C -0.024 4.024 25 N -0.388 5.388 26 C 0.334 3.666 27 O -0.380 6.380 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.235 0.765 34 H 0.144 0.856 35 H 0.090 0.910 36 H 0.116 0.884 37 H 0.107 0.893 38 H 0.076 0.924 39 H 0.224 0.776 40 H 0.081 0.919 41 H 0.115 0.885 42 H 0.090 0.910 43 H 0.116 0.884 44 H 0.115 0.885 45 H 0.104 0.896 46 H 0.092 0.908 47 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 18.108 3.177 20.229 27.335 hybrid contribution 0.390 -1.494 -0.230 1.562 sum 18.498 1.683 19.999 27.294 Atomic orbital electron populations 1.21973 0.94058 1.02245 1.04221 1.21431 0.97919 0.90815 1.03253 1.21798 0.97788 0.98859 0.94268 1.19658 0.79602 0.84818 0.83285 1.90788 1.41239 1.23374 1.84252 1.45965 1.52332 1.32072 1.06369 1.23123 0.92718 0.99095 0.83824 1.24491 1.00142 0.99060 0.89358 1.68369 1.07712 1.35266 1.05299 1.22469 0.99152 0.93141 0.97167 1.19664 0.88594 0.84752 0.83972 1.90538 1.50056 1.38201 1.66831 1.41857 1.17099 1.26507 1.34974 1.19650 0.93300 1.12574 1.17209 0.88014 1.25245 0.99474 0.95595 0.97656 1.69599 1.35390 1.15697 1.33878 0.85922 0.81638 0.77744 0.78958 1.19885 1.21001 1.19921 1.24423 0.93722 1.02376 0.93204 1.22805 0.91753 0.99736 1.02037 1.22063 0.89745 0.98665 0.91921 1.46128 1.13960 1.53315 1.25405 1.19966 0.83339 0.78050 0.85264 1.90727 1.24136 1.61175 1.61937 0.92078 0.90192 0.92513 0.90483 0.90467 0.76488 0.85582 0.91014 0.88445 0.89279 0.92407 0.77594 0.91881 0.88450 0.90991 0.88395 0.88539 0.89638 0.90768 0.74779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 9.41 37.16 0.35 -1.39 16 2 C -0.10 -0.70 4.77 -26.73 -0.13 -0.82 16 3 C -0.12 -0.99 0.50 -155.67 -0.08 -1.07 16 4 C 0.54 5.95 4.90 -10.99 -0.05 5.90 16 5 O -0.52 -8.28 15.69 5.55 0.09 -8.19 16 6 N -0.72 -6.24 5.13 -54.95 -0.28 -6.53 16 7 C 0.12 1.34 4.46 -69.63 -0.31 1.03 16 8 C 0.00 -0.01 7.75 -2.76 -0.02 -0.03 16 9 N -0.44 -7.07 5.65 -239.89 -1.36 -8.43 16 10 C 0.01 0.22 5.28 -4.97 -0.03 0.19 16 11 C 0.45 10.58 7.83 -10.98 -0.09 10.50 16 12 O -0.57 -16.00 16.01 5.55 0.09 -15.91 16 13 N -0.57 -14.38 5.29 -10.96 -0.06 -14.44 16 14 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 15 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 16 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 17 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 18 Si 0.93 21.24 29.55 -169.99 -5.02 16.21 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 22 C -0.01 -0.08 7.70 -2.77 -0.02 -0.10 16 23 C -0.13 -0.50 6.22 -25.10 -0.16 -0.65 16 24 C 0.10 0.43 7.78 -3.12 -0.02 0.40 16 25 N -0.73 -5.42 6.25 -59.12 -0.37 -5.79 16 26 C 0.55 6.10 6.46 -10.72 -0.07 6.04 16 27 O -0.51 -7.70 15.64 5.55 0.09 -7.61 16 28 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 29 H 0.08 1.02 6.03 -51.93 -0.31 0.70 16 30 H 0.06 0.68 6.92 -51.93 -0.36 0.32 16 31 H 0.08 0.37 7.66 -51.93 -0.40 -0.02 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.40 2.24 8.18 -40.82 -0.33 1.90 16 34 H 0.13 1.70 7.42 -51.93 -0.39 1.31 16 35 H 0.07 0.94 7.48 -51.93 -0.39 0.55 16 36 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 37 H 0.09 1.35 8.08 -51.93 -0.42 0.93 16 38 H 0.06 0.86 7.38 -51.93 -0.38 0.47 16 39 H 0.39 9.38 7.90 -40.82 -0.32 9.05 16 40 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 41 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.07 0.59 7.90 -51.93 -0.41 0.18 16 43 H 0.10 0.20 7.91 -51.93 -0.41 -0.21 16 44 H 0.10 0.25 7.82 -51.93 -0.41 -0.16 16 45 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 46 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.41 2.45 8.96 -40.82 -0.37 2.08 16 LS Contribution 385.77 15.07 5.81 5.81 Total: -1.00 -38.19 385.77 -8.10 -46.29 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -6.94 Total: 10.43 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: -0.86 Total: 11.97 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: -1.34 Total: -59.01 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: 0.26 Total: -31.71 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -38.19 -8.10 -46.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494400862.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.773 kcal (2) G-P(sol) polarization free energy of solvation -38.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds