Wall clock time and date at job start Tue Mar 31 2020 22:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46869 * 2 1 4 4 C 1.50690 * 110.43657 * 305.57008 * 3 2 1 5 5 O 1.21285 * 120.00171 * 124.96702 * 4 3 2 6 6 N 1.34779 * 120.00241 * 304.97263 * 4 3 2 7 7 C 1.46500 * 120.00335 * 174.83245 * 6 4 3 8 8 C 1.53937 * 113.73688 * 252.00590 * 7 6 4 9 9 N 1.47964 * 86.17867 * 221.91903 * 8 7 6 10 10 C 1.46904 * 110.99967 * 137.57860 * 9 8 7 11 11 C 1.50699 * 109.46654 * 90.63921 * 10 9 8 12 12 O 1.21291 * 120.00332 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99560 * 180.02562 * 11 10 9 14 14 C 1.37093 * 119.99707 * 180.02562 * 13 11 10 15 15 H 1.08008 * 120.00538 * 359.97438 * 14 13 11 16 16 C 1.38956 * 119.99967 * 179.97438 * 14 13 11 17 17 N 1.31407 * 119.99652 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00050 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47167 * 59.99927 * 18 16 14 20 20 H 1.48499 * 109.47031 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47114 * 300.00289 * 18 16 14 22 22 C 1.47962 * 90.76281 * 24.68810 * 9 8 7 23 23 C 1.54635 * 110.48559 * 183.02793 * 3 2 1 24 24 C 1.54479 * 101.76594 * 216.39182 * 23 3 2 25 25 N 1.46773 * 105.47248 * 25.41776 * 24 23 3 26 26 C 1.34738 * 111.34844 * 343.01638 * 25 24 23 27 27 O 1.21286 * 125.11941 * 180.38705 * 26 25 24 28 28 H 1.09007 * 109.46904 * 174.90708 * 1 2 3 29 29 H 1.08995 * 109.47469 * 294.90899 * 1 2 3 30 30 H 1.08996 * 109.47323 * 54.91118 * 1 2 3 31 31 H 1.08995 * 109.47719 * 240.00141 * 2 1 3 32 32 H 1.08998 * 109.47384 * 119.99660 * 2 1 3 33 33 H 0.96998 * 119.99703 * 355.11241 * 6 4 3 34 34 H 1.08999 * 112.93515 * 23.70726 * 7 6 4 35 35 H 1.09000 * 113.75490 * 336.23439 * 8 7 6 36 36 H 1.08991 * 113.76187 * 107.60136 * 8 7 6 37 37 H 1.08991 * 109.47095 * 210.63703 * 10 9 8 38 38 H 1.08997 * 109.47033 * 330.64161 * 10 9 8 39 39 H 0.96993 * 119.99836 * 359.97438 * 13 11 10 40 40 H 0.97002 * 119.99942 * 180.02562 * 17 16 14 41 41 H 1.09007 * 113.75674 * 220.99450 * 22 9 8 42 42 H 1.08999 * 113.76360 * 89.62866 * 22 9 8 43 43 H 1.08994 * 110.96649 * 334.51349 * 23 3 2 44 44 H 1.08995 * 110.96582 * 98.27220 * 23 3 2 45 45 H 1.08994 * 110.24525 * 144.41350 * 24 23 3 46 46 H 1.08998 * 110.24488 * 266.33211 * 24 23 3 47 47 H 0.96994 * 124.34595 * 162.98020 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.4409 2.2124 -1.1486 5 8 0.8429 3.2467 -0.9392 6 7 1.5694 1.7517 -2.4086 7 6 0.8922 2.4374 -3.5120 8 6 -0.3058 1.6580 -4.0839 9 7 0.1904 2.0677 -5.4163 10 6 0.1180 0.9531 -6.3705 11 6 -1.2141 0.9804 -7.0745 12 8 -2.0238 1.8431 -6.8073 13 7 -1.5062 0.0455 -8.0004 14 6 -2.7179 0.0707 -8.6413 15 1 -3.4386 0.8394 -8.4040 16 6 -3.0189 -0.8928 -9.5962 17 7 -2.1423 -1.8283 -9.8846 18 14 -4.6702 -0.8590 -10.4689 19 1 -4.8190 0.4266 -11.1971 20 1 -4.7436 -1.9860 -11.4331 21 1 -5.7608 -0.9910 -9.4699 22 6 1.5615 2.2192 -4.8810 23 6 3.5841 1.4707 -0.0765 24 6 3.9223 2.6776 0.8264 25 7 2.7937 2.7990 1.7568 26 6 1.7184 2.1178 1.3150 27 8 0.6498 2.0547 1.8853 28 1 -0.3633 -1.0237 -0.0912 29 1 -0.3634 0.4328 0.9320 30 1 -0.3634 0.5907 -0.8409 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.1069 0.9636 -2.5844 34 1 0.6733 3.4823 -3.2922 35 1 -0.2551 0.5836 -3.9077 36 1 -1.2733 2.0876 -3.8245 37 1 0.9185 1.0501 -7.1038 38 1 0.2272 0.0095 -5.8360 39 1 -0.8589 -0.6445 -8.2138 40 1 -2.3522 -2.5007 -10.5515 41 1 2.0857 3.0972 -5.2584 42 1 2.1583 1.3089 -4.9379 43 1 4.0113 0.5516 0.3245 44 1 3.9209 1.6419 -1.0989 45 1 4.8452 2.4910 1.3754 46 1 4.0173 3.5826 0.2264 47 1 2.8185 3.3044 2.5843 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494400862.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:19 Heat of formation + Delta-G solvation = -100.392620 kcal Electronic energy + Delta-G solvation = -29723.697025 eV Core-core repulsion = 25520.152551 eV Total energy + Delta-G solvation = -4203.544474 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.45994 -41.28168 -39.90731 -39.21311 -37.47061 -35.97418 -35.75196 -34.67019 -33.27207 -31.29431 -30.84545 -28.48701 -27.30560 -27.12493 -25.35689 -23.99622 -23.46429 -22.55463 -21.37925 -21.02705 -20.21208 -19.89339 -18.60229 -18.27462 -17.90401 -17.64018 -16.79579 -16.65744 -16.52289 -16.36890 -15.87571 -15.68486 -15.64837 -15.31134 -14.85579 -14.77413 -14.54118 -14.34150 -14.15699 -14.15169 -13.71897 -13.69428 -13.50121 -13.30495 -13.01712 -12.82209 -12.72410 -12.59429 -12.45493 -12.38515 -12.22427 -12.13152 -11.86184 -11.83536 -11.49579 -11.01313 -10.72411 -10.37293 -10.18536 -10.07997 -10.00078 -9.67769 -8.46381 -5.94492 1.28903 1.39089 1.40819 1.43352 1.51398 2.06732 2.08543 2.29350 2.41288 2.82164 3.07219 3.20106 3.29842 3.40220 3.54680 3.55930 3.76470 3.82357 4.04215 4.11632 4.27770 4.30238 4.32524 4.35668 4.42511 4.48316 4.55980 4.69761 4.72644 4.77568 4.80754 4.88501 4.94243 4.99691 5.06075 5.11980 5.35332 5.37558 5.39257 5.41877 5.81909 5.87948 5.97868 6.07996 6.42199 6.62477 7.11575 7.14539 7.20330 7.58406 8.16134 8.70733 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024524 B = 0.002087 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.449669 B =13412.516685 C =13691.118881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.093 4.093 3 C -0.116 4.116 4 C 0.541 3.459 5 O -0.581 6.581 6 N -0.693 5.693 7 C 0.131 3.869 8 C -0.006 4.006 9 N -0.485 5.485 10 C 0.028 3.972 11 C 0.438 3.562 12 O -0.624 6.624 13 N -0.575 5.575 14 C -0.334 4.334 15 H 0.073 0.927 16 C -0.011 4.011 17 N -0.918 5.918 18 Si 0.989 3.011 19 H -0.273 1.273 20 H -0.268 1.268 21 H -0.274 1.274 22 C 0.014 3.986 23 C -0.115 4.115 24 C 0.092 3.908 25 N -0.725 5.725 26 C 0.530 3.470 27 O -0.565 6.565 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.032 0.968 31 H 0.114 0.886 32 H 0.093 0.907 33 H 0.422 0.578 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.054 0.946 37 H 0.117 0.883 38 H 0.089 0.911 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.110 0.890 42 H 0.114 0.886 43 H 0.130 0.870 44 H 0.119 0.881 45 H 0.122 0.878 46 H 0.071 0.929 47 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.930 -0.478 19.717 31.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.131 4.131 3 C -0.123 4.123 4 C 0.327 3.673 5 O -0.459 6.459 6 N -0.346 5.346 7 C 0.025 3.975 8 C -0.136 4.136 9 N -0.208 5.208 10 C -0.104 4.104 11 C 0.225 3.775 12 O -0.510 6.510 13 N -0.213 5.213 14 C -0.464 4.464 15 H 0.091 0.909 16 C -0.211 4.211 17 N -0.559 5.559 18 Si 0.813 3.187 19 H -0.199 1.199 20 H -0.192 1.192 21 H -0.200 1.200 22 C -0.115 4.115 23 C -0.152 4.152 24 C -0.031 4.031 25 N -0.380 5.380 26 C 0.315 3.685 27 O -0.443 6.443 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.132 0.868 32 H 0.112 0.888 33 H 0.261 0.739 34 H 0.118 0.882 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.135 0.865 38 H 0.107 0.893 39 H 0.232 0.768 40 H 0.087 0.913 41 H 0.128 0.872 42 H 0.132 0.868 43 H 0.149 0.851 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.090 0.910 47 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 22.113 1.103 19.717 29.647 hybrid contribution -0.821 -0.793 -0.020 1.142 sum 21.292 0.310 19.697 29.007 Atomic orbital electron populations 1.21942 0.97088 1.02099 1.01453 1.21524 0.95147 0.90564 1.05819 1.21797 1.00993 0.98338 0.91190 1.20215 0.78566 0.84165 0.84340 1.90771 1.43823 1.26238 1.85110 1.45683 1.51604 1.32267 1.05028 1.22675 0.92005 0.97460 0.85357 1.24485 0.99384 1.00123 0.89656 1.68275 1.11568 1.35277 1.05697 1.22359 0.95076 0.95146 0.97799 1.20968 0.90616 0.82985 0.82896 1.90507 1.52479 1.39920 1.68065 1.41920 1.16542 1.27289 1.35529 1.19571 0.94519 1.13090 1.19213 0.90867 1.25969 1.02672 0.94828 0.97615 1.69645 1.36535 1.15741 1.33988 0.85047 0.77566 0.78108 0.77970 1.19880 1.19192 1.19987 1.24481 0.91490 1.04800 0.90703 1.22997 0.87626 1.00980 1.03619 1.22410 0.89787 0.99023 0.91891 1.46287 1.14107 1.51773 1.25794 1.20647 0.83206 0.78417 0.86217 1.90691 1.26472 1.63407 1.63752 0.90826 0.93363 0.94922 0.86793 0.88811 0.73912 0.88234 0.89302 0.92710 0.86514 0.89327 0.76841 0.91264 0.87207 0.86793 0.85136 0.86241 0.85985 0.91024 0.74396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.53 9.41 71.98 0.68 -2.85 16 2 C -0.09 -1.10 4.77 30.59 0.15 -0.95 16 3 C -0.12 -1.69 0.50 -52.93 -0.03 -1.71 16 4 C 0.54 11.44 4.90 87.65 0.43 11.87 16 5 O -0.58 -19.30 15.69 -3.04 -0.05 -19.35 16 6 N -0.69 -10.39 5.13 -446.14 -2.29 -12.68 16 7 C 0.13 2.86 4.46 46.56 0.21 3.07 16 8 C -0.01 -0.18 7.75 86.41 0.67 0.49 16 9 N -0.48 -14.83 5.65 -912.89 -5.16 -19.98 16 10 C 0.03 0.89 5.28 85.56 0.45 1.34 16 11 C 0.44 21.00 7.83 87.66 0.69 21.69 16 12 O -0.62 -36.19 16.01 -3.06 -0.05 -36.24 16 13 N -0.57 -29.43 5.29 -306.97 -1.62 -31.06 16 14 C -0.33 -19.24 9.68 84.04 0.81 -18.42 16 15 H 0.07 4.55 7.16 -2.91 -0.02 4.53 16 16 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 17 N -0.92 -49.12 13.05 21.66 0.28 -48.83 16 18 Si 0.99 43.43 29.55 68.60 2.03 45.46 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 20 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 C 0.01 0.24 7.70 86.40 0.67 0.91 16 23 C -0.11 -0.37 6.22 31.65 0.20 -0.17 16 24 C 0.09 0.47 7.78 86.83 0.68 1.15 16 25 N -0.73 -9.98 6.25 -459.36 -2.87 -12.85 16 26 C 0.53 11.82 6.46 87.85 0.57 12.39 16 27 O -0.57 -18.46 15.64 -3.05 -0.05 -18.51 16 28 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.05 1.33 6.03 -2.39 -0.01 1.31 16 30 H 0.03 0.81 6.92 -2.39 -0.02 0.79 16 31 H 0.11 0.52 7.66 -2.39 -0.02 0.50 16 32 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.42 2.66 8.18 -92.71 -0.76 1.90 16 34 H 0.10 2.78 7.42 -2.39 -0.02 2.76 16 35 H 0.09 2.20 7.48 -2.39 -0.02 2.18 16 36 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.12 3.09 8.08 -2.39 -0.02 3.07 16 38 H 0.09 2.29 7.38 -2.39 -0.02 2.27 16 39 H 0.40 18.89 7.90 -92.71 -0.73 18.16 16 40 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 41 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 42 H 0.11 1.13 7.90 -2.39 -0.02 1.11 16 43 H 0.13 -0.32 7.91 -2.39 -0.02 -0.34 16 44 H 0.12 -0.09 7.82 -2.39 -0.02 -0.11 16 45 H 0.12 -0.19 8.14 -2.39 -0.02 -0.21 16 46 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.42 4.79 8.96 -92.71 -0.83 3.96 16 Total: -1.00 -92.42 385.77 -4.43 -96.85 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: -1.29 Total: 28.53 kcal Atomic # 6 Polarization: 22.04 SS G_CDS: 6.63 Total: 28.67 kcal Atomic # 7 Polarization: -113.75 SS G_CDS: -11.66 Total: -125.41 kcal Atomic # 8 Polarization: -73.95 SS G_CDS: -0.14 Total: -74.10 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -92.42 -4.43 -96.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494400862.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.541 kcal (2) G-P(sol) polarization free energy of solvation -92.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds