Wall clock time and date at job start Tue Mar 31 2020 22:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47180 * 2 1 4 4 C 1.50692 * 110.43575 * 58.79030 * 3 2 1 5 5 O 1.21288 * 120.00183 * 239.58650 * 4 3 2 6 6 N 1.34784 * 120.00232 * 59.58289 * 4 3 2 7 7 C 1.46500 * 119.99905 * 175.00601 * 6 4 3 8 8 C 1.53513 * 114.16853 * 205.00227 * 7 6 4 9 9 N 1.47476 * 87.93112 * 220.14134 * 8 7 6 10 10 C 1.46900 * 110.99885 * 138.70498 * 9 8 7 11 11 C 1.50703 * 109.47034 * 170.00162 * 10 9 8 12 12 O 1.21292 * 119.99950 * 359.97438 * 11 10 9 13 13 N 1.34782 * 120.00086 * 179.72654 * 11 10 9 14 14 C 1.37091 * 120.00137 * 180.27500 * 13 11 10 15 15 H 1.08009 * 120.00370 * 359.97438 * 14 13 11 16 16 C 1.38948 * 119.99965 * 179.97438 * 14 13 11 17 17 N 1.31404 * 120.00073 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99994 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46689 * 60.00183 * 18 16 14 20 20 H 1.48496 * 109.46951 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47427 * 300.00656 * 18 16 14 22 22 C 1.47481 * 87.84041 * 27.00925 * 9 8 7 23 23 C 1.54629 * 110.48562 * 181.33119 * 3 2 1 24 24 C 1.54479 * 101.76515 * 94.01286 * 23 3 2 25 25 N 1.46759 * 105.47372 * 25.41351 * 24 23 3 26 26 C 1.34418 * 111.30523 * 342.98583 * 25 24 23 27 27 O 1.21274 * 124.94552 * 180.44062 * 26 25 24 28 28 H 1.08997 * 109.47275 * 185.72088 * 1 2 3 29 29 H 1.08999 * 109.47058 * 305.71492 * 1 2 3 30 30 H 1.09001 * 109.46995 * 65.71514 * 1 2 3 31 31 H 1.08995 * 109.47494 * 239.99655 * 2 1 3 32 32 H 1.09003 * 109.47007 * 120.00103 * 2 1 3 33 33 H 0.96992 * 119.99508 * 355.01294 * 6 4 3 34 34 H 1.09008 * 113.25882 * 337.95417 * 7 6 4 35 35 H 1.09000 * 113.47608 * 105.37742 * 8 7 6 36 36 H 1.08997 * 113.47605 * 334.90691 * 8 7 6 37 37 H 1.08991 * 109.47340 * 50.00154 * 10 9 8 38 38 H 1.08998 * 109.47301 * 289.99430 * 10 9 8 39 39 H 0.96999 * 119.99304 * 0.26878 * 13 11 10 40 40 H 0.97000 * 120.00158 * 179.97438 * 17 16 14 41 41 H 1.09002 * 113.47272 * 87.74887 * 22 9 8 42 42 H 1.08992 * 113.47975 * 218.22504 * 22 9 8 43 43 H 1.08997 * 110.97110 * 212.12989 * 23 3 2 44 44 H 1.09001 * 110.96893 * 335.89309 * 23 3 2 45 45 H 1.08995 * 110.24873 * 144.41408 * 24 23 3 46 46 H 1.09004 * 110.24826 * 266.32778 * 24 23 3 47 47 H 0.97008 * 124.35057 * 162.98421 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5255 2.1824 1.2077 5 8 0.8449 3.1762 1.0656 6 7 1.8217 1.7400 2.4459 7 6 1.4151 2.5182 3.6186 8 6 2.2793 2.2761 4.8641 9 7 1.0417 2.3165 5.6651 10 6 1.0515 1.2758 6.7018 11 6 -0.0998 1.4989 7.6484 12 8 -0.8539 2.4332 7.4765 13 7 -0.2944 0.6573 8.6830 14 6 -1.3450 0.8570 9.5408 15 1 -2.0165 1.6889 9.3878 16 6 -1.5459 -0.0109 10.6071 17 7 -0.7285 -1.0228 10.7936 18 14 -2.9770 0.2615 11.7764 19 1 -4.2531 0.2011 11.0192 20 1 -2.9710 -0.7944 12.8205 21 1 -2.8450 1.5941 12.4183 22 6 0.3163 1.8601 4.4649 23 6 3.5857 1.4700 -0.0337 24 6 3.8656 1.5931 -1.5479 25 7 2.6707 2.2273 -2.1167 26 6 1.6286 2.1525 -1.2710 27 8 0.5197 2.5898 -1.4945 28 1 -0.3634 -1.0225 0.1024 29 1 -0.3633 0.5999 0.8344 30 1 -0.3633 0.4227 -0.9367 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 2.3041 0.9064 2.5605 34 1 1.2373 3.5705 3.3964 35 1 2.9649 3.0949 5.0827 36 1 2.7690 1.3024 4.8702 37 1 1.9900 1.3219 7.2540 38 1 0.9527 0.2962 6.2342 39 1 0.3089 -0.0897 8.8206 40 1 -0.8686 -1.6285 11.5382 41 1 0.2822 0.7753 4.3645 42 1 -0.6617 2.3262 4.3451 43 1 3.9723 2.3344 0.5060 44 1 4.0011 0.5448 0.3659 45 1 4.7422 2.2176 -1.7199 46 1 4.0148 0.6059 -1.9854 47 1 2.6371 2.6468 -2.9908 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494400863.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:24 Heat of formation + Delta-G solvation = -62.461168 kcal Electronic energy + Delta-G solvation = -29558.784936 eV Core-core repulsion = 25356.885293 eV Total energy + Delta-G solvation = -4201.899643 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.68633 -40.35759 -38.68877 -37.66467 -36.82051 -34.76064 -34.02857 -33.69089 -31.25167 -30.71222 -29.76813 -27.89024 -25.92797 -25.59835 -23.91544 -23.41288 -22.72519 -21.95178 -20.44483 -19.47259 -19.23005 -17.92902 -17.89507 -17.00042 -16.74203 -16.24541 -16.02694 -15.53141 -15.39208 -15.16936 -14.72999 -14.64862 -14.42465 -14.21665 -13.88636 -13.62647 -13.54144 -13.40153 -13.18221 -12.90404 -12.82900 -12.63790 -12.42121 -12.26685 -12.07086 -11.63691 -11.56081 -11.49458 -11.29781 -11.17972 -11.03959 -10.66080 -10.42531 -10.19412 -10.06699 -9.95059 -9.50549 -9.47336 -9.19944 -8.84692 -8.21001 -7.94332 -6.40001 -3.80514 2.17062 2.36647 2.72541 3.06150 3.21939 3.27017 3.32096 3.64618 3.79973 3.91878 4.01902 4.13275 4.23152 4.33710 4.40381 4.48739 4.68074 4.77595 4.82158 4.94274 4.96562 4.98151 5.15502 5.15978 5.21897 5.30045 5.32003 5.37468 5.56855 5.58009 5.64188 5.66135 5.68773 5.85620 6.04662 6.07749 6.22985 6.30722 6.37663 6.50118 6.58912 7.09645 7.23167 7.56977 7.90046 8.00927 8.07774 8.64169 9.20520 9.56229 10.09047 10.77872 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026048 B = 0.001995 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.688584 B =14032.284857 C =14151.363892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.098 4.098 3 C -0.118 4.118 4 C 0.535 3.465 5 O -0.508 6.508 6 N -0.715 5.715 7 C 0.120 3.880 8 C -0.013 4.013 9 N -0.434 5.434 10 C 0.012 3.988 11 C 0.446 3.554 12 O -0.573 6.573 13 N -0.567 5.567 14 C -0.298 4.298 15 H 0.102 0.898 16 C 0.021 3.979 17 N -0.904 5.904 18 Si 0.930 3.070 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.273 1.273 22 C -0.008 4.008 23 C -0.126 4.126 24 C 0.104 3.896 25 N -0.736 5.736 26 C 0.541 3.459 27 O -0.493 6.493 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.399 0.601 34 H 0.129 0.871 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.391 0.609 40 H 0.271 0.729 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.607 -2.924 -24.664 29.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.136 4.136 3 C -0.125 4.125 4 C 0.318 3.682 5 O -0.381 6.381 6 N -0.367 5.367 7 C 0.015 3.985 8 C -0.143 4.143 9 N -0.156 5.156 10 C -0.121 4.121 11 C 0.231 3.769 12 O -0.455 6.455 13 N -0.205 5.205 14 C -0.427 4.427 15 H 0.120 0.880 16 C -0.180 4.180 17 N -0.546 5.546 18 Si 0.757 3.243 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.138 4.138 23 C -0.164 4.164 24 C -0.021 4.021 25 N -0.394 5.394 26 C 0.324 3.676 27 O -0.364 6.364 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.234 0.766 34 H 0.146 0.854 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.224 0.776 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.112 0.888 43 H 0.108 0.892 44 H 0.120 0.880 45 H 0.102 0.898 46 H 0.094 0.906 47 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 14.770 -0.896 -24.341 28.486 hybrid contribution 0.337 -1.615 0.225 1.665 sum 15.106 -2.511 -24.116 28.567 Atomic orbital electron populations 1.21867 0.94097 1.02244 1.03663 1.21451 0.97699 0.90913 1.03539 1.21751 0.97794 0.98637 0.94337 1.19720 0.80016 0.84801 0.83614 1.90829 1.35833 1.25749 1.85730 1.45873 1.59551 1.26166 1.05155 1.22705 0.95587 0.97870 0.82371 1.24320 0.95561 1.02067 0.92336 1.68798 1.04859 1.38356 1.03600 1.22495 1.00233 0.93721 0.95621 1.19649 0.87783 0.85519 0.83995 1.90541 1.48093 1.32274 1.74639 1.41855 1.27727 1.26446 1.24435 1.19651 1.05585 1.12234 1.05241 0.88007 1.25244 0.98858 0.95573 0.98309 1.69597 1.37754 1.15622 1.31612 0.85922 0.80986 0.77937 0.79410 1.19921 1.21006 1.19882 1.24399 1.00369 0.99268 0.89793 1.22779 0.91986 1.04963 0.96627 1.22033 0.88373 0.98657 0.93048 1.46098 1.12045 1.60606 1.20641 1.19922 0.84382 0.78528 0.84801 1.90795 1.21307 1.46701 1.77631 0.91862 0.92029 0.91615 0.90379 0.90144 0.76629 0.85361 0.88866 0.91116 0.89258 0.92243 0.77593 0.91888 0.91160 0.88791 0.89214 0.88018 0.89841 0.90624 0.74779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.37 37.16 0.35 -1.16 16 2 C -0.10 -0.61 4.85 -26.73 -0.13 -0.74 16 3 C -0.12 -0.94 0.49 -155.67 -0.08 -1.02 16 4 C 0.53 6.07 5.05 -10.99 -0.06 6.02 16 5 O -0.51 -8.52 15.04 -13.31 -0.20 -8.72 16 6 N -0.72 -6.40 5.29 -53.54 -0.28 -6.68 16 7 C 0.12 1.41 4.56 -67.72 -0.31 1.10 16 8 C -0.01 -0.14 7.45 -7.54 -0.06 -0.20 16 9 N -0.43 -7.06 5.82 -246.09 -1.43 -8.49 16 10 C 0.01 0.20 5.30 -4.97 -0.03 0.17 16 11 C 0.45 10.69 7.85 -10.98 -0.09 10.60 16 12 O -0.57 -16.14 16.01 5.55 0.09 -16.05 16 13 N -0.57 -14.47 5.29 -10.96 -0.06 -14.53 16 14 C -0.30 -8.40 9.68 -14.94 -0.14 -8.54 16 15 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 16 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 17 N -0.90 -24.62 13.05 55.50 0.72 -23.89 16 18 Si 0.93 21.30 29.55 -169.99 -5.02 16.27 16 19 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 22 C -0.01 -0.12 7.53 -7.54 -0.06 -0.17 16 23 C -0.13 -0.48 6.19 -25.10 -0.16 -0.63 16 24 C 0.10 0.31 7.78 -3.13 -0.02 0.29 16 25 N -0.74 -4.80 6.24 -59.21 -0.37 -5.17 16 26 C 0.54 5.85 6.40 -10.86 -0.07 5.78 16 27 O -0.49 -7.78 15.82 -13.30 -0.21 -7.99 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.72 7.04 -51.93 -0.37 0.35 16 30 H 0.06 0.74 6.86 -51.93 -0.36 0.38 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.32 7.55 -51.93 -0.39 -0.07 16 33 H 0.40 2.25 8.11 -40.82 -0.33 1.92 16 34 H 0.13 1.78 7.51 -51.92 -0.39 1.39 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.60 7.90 -51.93 -0.41 0.19 16 37 H 0.09 1.36 8.08 -51.93 -0.42 0.94 16 38 H 0.06 0.89 7.30 -51.93 -0.38 0.51 16 39 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 40 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 41 H 0.07 0.92 7.42 -51.93 -0.39 0.53 16 42 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 43 H 0.09 0.39 7.91 -51.93 -0.41 -0.02 16 44 H 0.10 0.10 7.90 -51.93 -0.41 -0.31 16 45 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 46 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 47 H 0.41 2.13 8.96 -40.82 -0.37 1.76 16 LS Contribution 386.17 15.07 5.82 5.82 Total: -1.00 -39.10 386.17 -8.87 -47.97 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -6.99 Total: 9.48 kcal Atomic # 6 Polarization: 12.92 SS G_CDS: -0.94 Total: 11.98 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -1.42 Total: -58.76 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -0.32 Total: -32.76 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -39.10 -8.87 -47.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494400863.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.496 kcal (2) G-P(sol) polarization free energy of solvation -39.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds