Wall clock time and date at job start Tue Mar 31 2020 22:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47180 * 2 1 4 4 C 1.50692 * 110.43575 * 58.79030 * 3 2 1 5 5 O 1.21288 * 120.00183 * 239.58650 * 4 3 2 6 6 N 1.34784 * 120.00232 * 59.58289 * 4 3 2 7 7 C 1.46500 * 119.99905 * 175.00601 * 6 4 3 8 8 C 1.53513 * 114.16853 * 205.00227 * 7 6 4 9 9 N 1.47476 * 87.93112 * 220.14134 * 8 7 6 10 10 C 1.46900 * 110.99885 * 138.70498 * 9 8 7 11 11 C 1.50703 * 109.47034 * 170.00162 * 10 9 8 12 12 O 1.21292 * 119.99950 * 359.97438 * 11 10 9 13 13 N 1.34782 * 120.00086 * 179.72654 * 11 10 9 14 14 C 1.37091 * 120.00137 * 180.27500 * 13 11 10 15 15 H 1.08009 * 120.00370 * 359.97438 * 14 13 11 16 16 C 1.38948 * 119.99965 * 179.97438 * 14 13 11 17 17 N 1.31404 * 120.00073 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99994 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46689 * 60.00183 * 18 16 14 20 20 H 1.48496 * 109.46951 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47427 * 300.00656 * 18 16 14 22 22 C 1.47481 * 87.84041 * 27.00925 * 9 8 7 23 23 C 1.54629 * 110.48562 * 181.33119 * 3 2 1 24 24 C 1.54479 * 101.76515 * 94.01286 * 23 3 2 25 25 N 1.46759 * 105.47372 * 25.41351 * 24 23 3 26 26 C 1.34418 * 111.30523 * 342.98583 * 25 24 23 27 27 O 1.21274 * 124.94552 * 180.44062 * 26 25 24 28 28 H 1.08997 * 109.47275 * 185.72088 * 1 2 3 29 29 H 1.08999 * 109.47058 * 305.71492 * 1 2 3 30 30 H 1.09001 * 109.46995 * 65.71514 * 1 2 3 31 31 H 1.08995 * 109.47494 * 239.99655 * 2 1 3 32 32 H 1.09003 * 109.47007 * 120.00103 * 2 1 3 33 33 H 0.96992 * 119.99508 * 355.01294 * 6 4 3 34 34 H 1.09008 * 113.25882 * 337.95417 * 7 6 4 35 35 H 1.09000 * 113.47608 * 105.37742 * 8 7 6 36 36 H 1.08997 * 113.47605 * 334.90691 * 8 7 6 37 37 H 1.08991 * 109.47340 * 50.00154 * 10 9 8 38 38 H 1.08998 * 109.47301 * 289.99430 * 10 9 8 39 39 H 0.96999 * 119.99304 * 0.26878 * 13 11 10 40 40 H 0.97000 * 120.00158 * 179.97438 * 17 16 14 41 41 H 1.09002 * 113.47272 * 87.74887 * 22 9 8 42 42 H 1.08992 * 113.47975 * 218.22504 * 22 9 8 43 43 H 1.08997 * 110.97110 * 212.12989 * 23 3 2 44 44 H 1.09001 * 110.96893 * 335.89309 * 23 3 2 45 45 H 1.08995 * 110.24873 * 144.41408 * 24 23 3 46 46 H 1.09004 * 110.24826 * 266.32778 * 24 23 3 47 47 H 0.97008 * 124.35057 * 162.98421 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5255 2.1824 1.2077 5 8 0.8449 3.1762 1.0656 6 7 1.8217 1.7400 2.4459 7 6 1.4151 2.5182 3.6186 8 6 2.2793 2.2761 4.8641 9 7 1.0417 2.3165 5.6651 10 6 1.0515 1.2758 6.7018 11 6 -0.0998 1.4989 7.6484 12 8 -0.8539 2.4332 7.4765 13 7 -0.2944 0.6573 8.6830 14 6 -1.3450 0.8570 9.5408 15 1 -2.0165 1.6889 9.3878 16 6 -1.5459 -0.0109 10.6071 17 7 -0.7285 -1.0228 10.7936 18 14 -2.9770 0.2615 11.7764 19 1 -4.2531 0.2011 11.0192 20 1 -2.9710 -0.7944 12.8205 21 1 -2.8450 1.5941 12.4183 22 6 0.3163 1.8601 4.4649 23 6 3.5857 1.4700 -0.0337 24 6 3.8656 1.5931 -1.5479 25 7 2.6707 2.2273 -2.1167 26 6 1.6286 2.1525 -1.2710 27 8 0.5197 2.5898 -1.4945 28 1 -0.3634 -1.0225 0.1024 29 1 -0.3633 0.5999 0.8344 30 1 -0.3633 0.4227 -0.9367 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 2.3041 0.9064 2.5605 34 1 1.2373 3.5705 3.3964 35 1 2.9649 3.0949 5.0827 36 1 2.7690 1.3024 4.8702 37 1 1.9900 1.3219 7.2540 38 1 0.9527 0.2962 6.2342 39 1 0.3089 -0.0897 8.8206 40 1 -0.8686 -1.6285 11.5382 41 1 0.2822 0.7753 4.3645 42 1 -0.6617 2.3262 4.3451 43 1 3.9723 2.3344 0.5060 44 1 4.0011 0.5448 0.3659 45 1 4.7422 2.2176 -1.7199 46 1 4.0148 0.6059 -1.9854 47 1 2.6371 2.6468 -2.9908 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494400863.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:23 Heat of formation + Delta-G solvation = -98.117474 kcal Electronic energy + Delta-G solvation = -29560.331109 eV Core-core repulsion = 25356.885293 eV Total energy + Delta-G solvation = -4203.445816 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.41102 -41.42272 -39.91000 -39.26085 -37.56601 -35.96799 -35.50950 -34.67454 -33.28060 -31.40183 -30.90159 -28.47912 -27.31178 -26.94790 -25.35695 -24.00985 -23.33829 -22.68648 -21.41610 -21.05454 -20.24834 -19.90287 -18.58157 -17.93744 -17.67769 -17.63813 -16.86658 -16.61839 -16.50931 -16.37425 -16.09070 -15.70581 -15.67266 -15.19980 -15.02602 -14.83786 -14.39706 -14.32055 -14.22228 -13.97833 -13.71909 -13.67019 -13.50198 -13.13963 -13.02514 -12.93383 -12.74982 -12.67602 -12.45129 -12.34005 -12.19508 -12.12380 -11.85231 -11.76841 -11.50142 -10.90121 -10.77839 -10.39004 -10.13313 -10.02998 -10.00703 -9.75491 -8.46777 -5.95006 1.38885 1.40432 1.41201 1.51194 1.51695 1.99692 2.07120 2.29119 2.48025 2.89047 3.10740 3.19339 3.29478 3.38057 3.52555 3.68987 3.77142 3.83669 4.03522 4.09054 4.26772 4.28725 4.29941 4.39082 4.42549 4.43205 4.54867 4.70674 4.75170 4.80301 4.80606 4.91062 4.95714 4.99444 5.03909 5.13249 5.30773 5.34219 5.39119 5.41610 5.88191 5.88661 6.01603 6.08108 6.48574 6.61972 7.13977 7.17995 7.28899 7.57568 8.15427 8.70329 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026048 B = 0.001995 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.688584 B =14032.284857 C =14151.363892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.094 4.094 3 C -0.113 4.113 4 C 0.531 3.469 5 O -0.574 6.574 6 N -0.692 5.692 7 C 0.132 3.868 8 C 0.009 3.991 9 N -0.477 5.477 10 C 0.027 3.973 11 C 0.438 3.562 12 O -0.624 6.624 13 N -0.574 5.574 14 C -0.335 4.335 15 H 0.073 0.927 16 C -0.011 4.011 17 N -0.918 5.918 18 Si 0.990 3.010 19 H -0.274 1.274 20 H -0.267 1.267 21 H -0.274 1.274 22 C -0.013 4.013 23 C -0.118 4.118 24 C 0.098 3.902 25 N -0.727 5.727 26 C 0.522 3.478 27 O -0.562 6.562 28 H 0.080 0.920 29 H 0.028 0.972 30 H 0.036 0.964 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.422 0.578 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.091 0.909 39 H 0.398 0.602 40 H 0.278 0.722 41 H 0.091 0.909 42 H 0.049 0.951 43 H 0.085 0.915 44 H 0.146 0.854 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.552 -5.887 -24.887 32.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.131 4.131 3 C -0.120 4.120 4 C 0.317 3.683 5 O -0.452 6.452 6 N -0.345 5.345 7 C 0.026 3.974 8 C -0.120 4.120 9 N -0.200 5.200 10 C -0.105 4.105 11 C 0.225 3.775 12 O -0.510 6.510 13 N -0.212 5.212 14 C -0.464 4.464 15 H 0.091 0.909 16 C -0.211 4.211 17 N -0.559 5.559 18 Si 0.813 3.187 19 H -0.200 1.200 20 H -0.191 1.191 21 H -0.199 1.199 22 C -0.143 4.143 23 C -0.155 4.155 24 C -0.025 4.025 25 N -0.383 5.383 26 C 0.306 3.694 27 O -0.439 6.439 28 H 0.098 0.902 29 H 0.047 0.953 30 H 0.055 0.945 31 H 0.124 0.876 32 H 0.135 0.865 33 H 0.261 0.739 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.109 0.891 39 H 0.232 0.768 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.068 0.932 43 H 0.104 0.896 44 H 0.164 0.836 45 H 0.124 0.876 46 H 0.125 0.875 47 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 18.837 -3.936 -24.573 31.211 hybrid contribution -0.886 -0.661 0.225 1.128 sum 17.952 -4.597 -24.347 30.597 Atomic orbital electron populations 1.21852 0.97171 1.02202 1.00733 1.21576 0.94864 0.90074 1.06589 1.21774 1.00896 0.98508 0.90854 1.20438 0.78792 0.84067 0.85008 1.90811 1.38787 1.28922 1.86673 1.45589 1.58749 1.26508 1.03642 1.22257 0.95035 0.96496 0.83659 1.24331 0.93645 1.04814 0.89233 1.68708 1.08201 1.38732 1.04368 1.22384 0.97812 0.95480 0.94818 1.20951 0.88714 0.83916 0.83908 1.90509 1.50442 1.34264 1.75808 1.41913 1.27418 1.27097 1.24798 1.19571 1.06994 1.12586 1.07291 0.90884 1.25973 1.01061 0.94988 0.99063 1.69642 1.38492 1.15689 1.32044 0.85042 0.77831 0.78168 0.77613 1.19988 1.19142 1.19887 1.24438 0.99123 1.00278 0.90492 1.22968 0.87945 1.07174 0.97441 1.22430 0.87225 1.00424 0.92393 1.46233 1.12288 1.59401 1.20329 1.20604 0.84179 0.78227 0.86380 1.90750 1.24237 1.49756 1.79191 0.90153 0.95275 0.94500 0.87645 0.86542 0.73933 0.88311 0.87676 0.86809 0.86407 0.89117 0.76808 0.91242 0.89065 0.93223 0.89590 0.83565 0.87589 0.87550 0.74355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 9.37 71.98 0.67 -2.35 16 2 C -0.09 -0.87 4.85 30.59 0.15 -0.72 16 3 C -0.11 -1.59 0.49 -52.94 -0.03 -1.61 16 4 C 0.53 11.94 5.05 87.65 0.44 12.38 16 5 O -0.57 -20.76 15.04 14.98 0.23 -20.53 16 6 N -0.69 -10.93 5.29 -441.67 -2.34 -13.27 16 7 C 0.13 3.02 4.56 45.45 0.21 3.23 16 8 C 0.01 0.16 7.45 83.58 0.62 0.78 16 9 N -0.48 -15.03 5.82 -932.50 -5.43 -20.46 16 10 C 0.03 0.86 5.30 85.56 0.45 1.32 16 11 C 0.44 21.23 7.85 87.66 0.69 21.92 16 12 O -0.62 -36.69 16.01 -3.07 -0.05 -36.74 16 13 N -0.57 -29.60 5.29 -306.97 -1.62 -31.22 16 14 C -0.33 -19.37 9.68 84.04 0.81 -18.55 16 15 H 0.07 4.57 7.16 -2.91 -0.02 4.55 16 16 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 17 N -0.92 -49.19 13.05 21.66 0.28 -48.91 16 18 Si 0.99 43.56 29.55 68.60 2.03 45.59 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 20 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 C -0.01 -0.38 7.53 83.58 0.63 0.25 16 23 C -0.12 -0.35 6.19 31.65 0.20 -0.15 16 24 C 0.10 0.16 7.78 86.83 0.68 0.83 16 25 N -0.73 -8.38 6.24 -459.82 -2.87 -11.25 16 26 C 0.52 11.42 6.40 87.90 0.56 11.98 16 27 O -0.56 -19.39 15.82 15.02 0.24 -19.15 16 28 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.03 0.71 7.04 -2.39 -0.02 0.69 16 30 H 0.04 0.89 6.86 -2.39 -0.02 0.87 16 31 H 0.11 0.48 8.14 -2.39 -0.02 0.47 16 32 H 0.12 0.27 7.55 -2.39 -0.02 0.25 16 33 H 0.42 2.76 8.11 -92.71 -0.75 2.01 16 34 H 0.10 2.91 7.51 -2.38 -0.02 2.89 16 35 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.11 1.20 7.90 -2.39 -0.02 1.18 16 37 H 0.12 3.15 8.08 -2.39 -0.02 3.13 16 38 H 0.09 2.38 7.30 -2.39 -0.02 2.36 16 39 H 0.40 18.98 7.90 -92.71 -0.73 18.25 16 40 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 41 H 0.09 2.24 7.42 -2.39 -0.02 2.22 16 42 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.09 0.39 7.91 -2.39 -0.02 0.37 16 44 H 0.15 -0.80 7.90 -2.39 -0.02 -0.82 16 45 H 0.11 -0.21 8.14 -2.39 -0.02 -0.23 16 46 H 0.11 -0.36 8.14 -2.38 -0.02 -0.38 16 47 H 0.42 3.97 8.96 -92.70 -0.83 3.14 16 Total: -1.00 -96.47 386.17 -4.26 -100.73 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: -1.28 Total: 26.02 kcal Atomic # 6 Polarization: 22.63 SS G_CDS: 6.56 Total: 29.19 kcal Atomic # 7 Polarization: -113.13 SS G_CDS: -11.97 Total: -125.11 kcal Atomic # 8 Polarization: -76.84 SS G_CDS: 0.41 Total: -76.42 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -96.47 -4.26 -100.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494400863.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.612 kcal (2) G-P(sol) polarization free energy of solvation -96.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds