Wall clock time and date at job start Tue Mar 31 2020 21:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30620 * 125.41894 * 2 1 4 4 C 1.33693 * 108.99295 * 179.74852 * 3 2 1 5 5 C 1.50699 * 126.27524 * 180.27183 * 4 3 2 6 6 C 1.36345 * 107.45216 * 0.43236 * 4 3 2 7 7 C 1.46724 * 126.64717 * 179.83801 * 6 4 3 8 8 O 1.21687 * 119.99451 * 359.71827 * 7 6 4 9 9 N 1.34773 * 120.00163 * 179.71172 * 7 6 4 10 10 C 1.46496 * 119.99909 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.47459 * 35.00135 * 10 9 7 12 12 C 1.53006 * 109.46995 * 275.00159 * 10 9 7 13 13 C 1.52997 * 109.47194 * 155.00140 * 10 9 7 14 14 C 1.53003 * 109.46992 * 294.99585 * 13 10 9 15 15 N 1.46899 * 109.46993 * 180.02562 * 14 13 10 16 16 C 1.46906 * 111.00033 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47241 * 180.02562 * 16 15 14 18 18 O 1.21293 * 119.99894 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99660 * 180.02562 * 17 16 15 20 20 C 1.37101 * 119.99319 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00494 * 359.97438 * 20 19 17 22 22 C 1.38959 * 119.99732 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99879 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99844 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47035 * 60.00341 * 24 22 20 26 26 H 1.48500 * 109.46783 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47196 * 299.99584 * 24 22 20 28 28 O 1.33661 * 125.42467 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47815 * 269.97495 * 1 2 3 30 30 H 1.09004 * 109.47132 * 29.97959 * 1 2 3 31 31 H 1.09005 * 109.47362 * 149.97217 * 1 2 3 32 32 H 1.09001 * 109.46752 * 270.18673 * 5 4 3 33 33 H 1.08997 * 109.46815 * 30.18807 * 5 4 3 34 34 H 1.09002 * 109.46970 * 150.19214 * 5 4 3 35 35 H 0.97003 * 120.00265 * 0.02562 * 9 7 6 36 36 H 1.09001 * 109.47002 * 299.99701 * 12 10 9 37 37 H 1.08993 * 109.46955 * 60.00138 * 12 10 9 38 38 H 1.09000 * 109.47050 * 179.97438 * 12 10 9 39 39 H 1.09002 * 109.47223 * 54.99994 * 13 10 9 40 40 H 1.09006 * 109.47396 * 175.00204 * 13 10 9 41 41 H 1.09000 * 109.46966 * 300.00238 * 14 13 10 42 42 H 1.08998 * 109.46717 * 60.00358 * 14 13 10 43 43 H 1.00902 * 111.00200 * 303.95826 * 15 14 13 44 44 H 1.08998 * 109.46716 * 300.00033 * 16 15 14 45 45 H 1.09002 * 109.46367 * 60.00145 * 16 15 14 46 46 H 0.96990 * 120.00200 * 0.02562 * 19 17 16 47 47 H 0.96995 * 120.00330 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2640 1.0645 0.0000 4 6 3.5464 0.6864 0.0055 5 6 4.7451 1.5996 0.0133 6 6 3.5708 -0.6768 -0.0007 7 6 4.7636 -1.5313 -0.0012 8 8 5.8719 -1.0289 -0.0009 9 7 4.6316 -2.8726 -0.0020 10 6 5.8225 -3.7257 -0.0019 11 1 6.6079 -3.2533 0.5881 12 6 6.3109 -3.9197 -1.4389 13 6 5.4755 -5.0858 0.6068 14 6 5.1067 -4.9057 2.0808 15 7 4.7741 -6.2116 2.6654 16 6 4.4135 -6.0773 4.0831 17 6 4.0801 -7.4343 4.6475 18 8 4.1369 -8.4167 3.9383 19 7 3.7179 -7.5561 5.9399 20 6 3.4152 -8.7908 6.4534 21 1 3.4665 -9.6656 5.8221 22 6 3.0412 -8.9164 7.7858 23 7 2.9782 -7.8519 8.5537 24 14 2.6280 -10.5985 8.4852 25 1 3.8081 -11.4909 8.3582 26 1 2.2628 -10.4626 9.9182 27 1 1.4851 -11.1792 7.7356 28 8 2.2818 -1.0892 -0.0005 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5143 32 1 5.0371 1.8245 -1.0125 33 1 4.4933 2.5253 0.5307 34 1 5.5720 1.1094 0.5272 35 1 3.7481 -3.2731 -0.0025 36 1 5.5256 -4.3922 -2.0289 37 1 6.5581 -2.9508 -1.8725 38 1 7.1973 -4.5542 -1.4389 39 1 4.6307 -5.5188 0.0711 40 1 6.3360 -5.7502 0.5262 41 1 5.9515 -4.4727 2.6164 42 1 4.2463 -4.2414 2.1614 43 1 4.0361 -6.6630 2.1460 44 1 5.2531 -5.6519 4.6328 45 1 3.5478 -5.4216 4.1771 46 1 3.6714 -6.7704 6.5067 47 1 2.7175 -7.9396 9.4838 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497159075.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:30 Heat of formation + Delta-G solvation = -62.800523 kcal Electronic energy + Delta-G solvation = -28395.334021 eV Core-core repulsion = 24193.419662 eV Total energy + Delta-G solvation = -4201.914359 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.83363 -40.09769 -38.34083 -37.11099 -35.76454 -35.00567 -33.84344 -33.24780 -31.92328 -31.22693 -29.76190 -29.34804 -27.68720 -26.25620 -24.20525 -23.17333 -22.29884 -22.08040 -21.16040 -20.88527 -19.26777 -18.54929 -17.89369 -17.45820 -16.74851 -16.19869 -16.17311 -15.56045 -15.21908 -14.80429 -14.70838 -14.59041 -14.37232 -13.95731 -13.83327 -13.66422 -13.64232 -13.51440 -13.40972 -13.12733 -13.11601 -12.76993 -12.53564 -12.29356 -12.26239 -11.73121 -11.53950 -11.37218 -11.36569 -11.25925 -11.19161 -11.07446 -10.98252 -10.45383 -10.44025 -10.22570 -9.59580 -9.51377 -9.12042 -8.48428 -8.09060 -7.97515 -6.42840 -3.83879 0.41723 1.97362 1.98863 2.72595 2.77449 3.19123 3.24882 3.29216 3.46185 3.89044 4.00253 4.21920 4.30739 4.31791 4.71112 4.72723 4.76953 4.84465 4.91492 4.95071 5.12730 5.15894 5.19875 5.24631 5.25548 5.28554 5.32795 5.44272 5.47249 5.52143 5.60235 5.67619 5.74110 5.84131 5.88988 5.94698 5.97320 6.01721 6.16579 6.25187 6.95447 7.17263 7.23220 7.53761 7.62520 7.68018 8.04711 8.59838 9.16337 9.52816 10.04212 10.74848 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012849 B = 0.001992 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.690701 B =14053.915469 C =15374.751769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.224 3.776 3 N -0.491 5.491 4 C 0.085 3.915 5 C -0.082 4.082 6 C -0.125 4.125 7 C 0.612 3.388 8 O -0.514 6.514 9 N -0.712 5.712 10 C 0.143 3.857 11 H 0.095 0.905 12 C -0.163 4.163 13 C -0.125 4.125 14 C 0.058 3.942 15 N -0.668 5.668 16 C 0.051 3.949 17 C 0.440 3.560 18 O -0.584 6.584 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.932 3.068 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 O -0.189 6.189 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.404 0.596 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.072 0.928 42 H 0.025 0.975 43 H 0.348 0.652 44 H 0.086 0.914 45 H 0.042 0.958 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.510 18.446 -19.108 26.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.019 3.981 3 N -0.222 5.222 4 C -0.039 4.039 5 C -0.139 4.139 6 C -0.179 4.179 7 C 0.398 3.602 8 O -0.391 6.391 9 N -0.363 5.363 10 C 0.039 3.961 11 H 0.113 0.887 12 C -0.221 4.221 13 C -0.164 4.164 14 C -0.071 4.071 15 N -0.301 5.301 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 O -0.076 6.076 29 H 0.119 0.881 30 H 0.124 0.876 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.115 0.885 35 H 0.239 0.761 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.113 0.887 41 H 0.090 0.910 42 H 0.043 0.957 43 H 0.167 0.833 44 H 0.104 0.896 45 H 0.060 0.940 46 H 0.225 0.775 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.323 18.498 -19.231 26.685 hybrid contribution -1.476 -0.765 0.804 1.847 sum -1.799 17.733 -18.426 25.636 Atomic orbital electron populations 1.20423 0.80596 1.05650 1.05407 1.26605 0.96718 0.78548 0.96258 1.70378 1.01630 1.29929 1.20246 1.22103 0.93498 0.91293 0.97018 1.20409 0.92178 0.97535 1.03740 1.22877 0.82413 0.95199 1.17451 1.16274 0.85412 0.81698 0.76850 1.90862 1.23657 1.73852 1.50766 1.46058 1.10857 1.05216 1.74119 1.21113 0.87269 0.90378 0.97390 0.88691 1.22169 1.01717 1.02481 0.95722 1.21895 1.03673 0.95476 0.95309 1.21977 0.99988 0.90763 0.94399 1.60074 1.48098 1.19818 1.02081 1.21670 0.99885 0.96716 0.89932 1.19800 0.84305 0.89929 0.83384 1.90518 1.57793 1.39282 1.59219 1.41861 1.59340 1.10141 1.08647 1.19661 1.42460 0.86530 0.94340 0.87956 1.25274 0.97426 0.99163 0.96093 1.69602 1.48168 1.28951 1.07608 0.85906 0.79118 0.81584 0.77547 1.19852 1.20970 1.19911 1.84440 1.16165 1.37376 1.69649 0.88141 0.87627 0.88783 0.89952 0.90371 0.88535 0.76060 0.92323 0.92049 0.90984 0.91212 0.88736 0.90962 0.95731 0.83285 0.89612 0.94005 0.77455 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.26 10.51 36.01 0.38 0.12 16 2 C 0.22 2.00 8.32 -12.79 -0.11 1.89 16 3 N -0.49 -5.38 11.26 -7.07 -0.08 -5.46 16 4 C 0.09 0.95 7.16 -82.46 -0.59 0.36 16 5 C -0.08 -0.74 9.87 36.00 0.36 -0.38 16 6 C -0.12 -1.38 7.18 -36.84 -0.26 -1.64 16 7 C 0.61 6.80 7.75 -12.83 -0.10 6.70 16 8 O -0.51 -6.68 14.46 5.20 0.08 -6.61 16 9 N -0.71 -6.45 4.53 -55.10 -0.25 -6.70 16 10 C 0.14 1.25 2.57 -67.93 -0.17 1.08 16 11 H 0.10 0.95 7.58 -51.93 -0.39 0.56 16 12 C -0.16 -1.28 9.48 37.16 0.35 -0.92 16 13 C -0.13 -1.16 5.01 -26.73 -0.13 -1.29 16 14 C 0.06 0.69 5.57 -3.82 -0.02 0.67 16 15 N -0.67 -10.55 6.13 -115.05 -0.70 -11.26 16 16 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 17 C 0.44 10.45 7.82 -10.99 -0.09 10.36 16 18 O -0.58 -15.87 15.78 5.55 0.09 -15.79 16 19 N -0.56 -14.37 5.29 -10.96 -0.06 -14.43 16 20 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.61 13.05 55.50 0.72 -23.89 16 24 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 O -0.19 -1.88 10.57 4.43 0.05 -1.83 16 29 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.11 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.10 0.94 6.47 -51.93 -0.34 0.61 16 35 H 0.40 3.18 8.40 -40.82 -0.34 2.84 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.02 0.28 7.75 -51.93 -0.40 -0.12 16 43 H 0.35 5.57 8.43 -39.29 -0.33 5.24 16 44 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 45 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 47 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 402.37 15.07 6.06 6.06 Total: -1.00 -34.25 402.37 -6.92 -41.16 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -7.14 Total: 12.96 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: -0.66 Total: 9.74 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: -0.37 Total: -61.73 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: 0.21 Total: -24.23 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.25 -6.92 -41.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497159075.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.639 kcal (2) G-P(sol) polarization free energy of solvation -34.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds