Wall clock time and date at job start Tue Mar 31 2020 21:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30620 * 125.41894 * 2 1 4 4 C 1.33693 * 108.99295 * 179.74852 * 3 2 1 5 5 C 1.50699 * 126.27524 * 180.27183 * 4 3 2 6 6 C 1.36345 * 107.45216 * 0.43236 * 4 3 2 7 7 C 1.46724 * 126.64717 * 179.83801 * 6 4 3 8 8 O 1.21687 * 119.99451 * 359.71827 * 7 6 4 9 9 N 1.34773 * 120.00163 * 179.71172 * 7 6 4 10 10 C 1.46496 * 119.99909 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.47459 * 35.00135 * 10 9 7 12 12 C 1.53006 * 109.46995 * 275.00159 * 10 9 7 13 13 C 1.52997 * 109.47194 * 155.00140 * 10 9 7 14 14 C 1.53003 * 109.46992 * 294.99585 * 13 10 9 15 15 N 1.46899 * 109.46993 * 180.02562 * 14 13 10 16 16 C 1.46906 * 111.00033 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47241 * 180.02562 * 16 15 14 18 18 O 1.21293 * 119.99894 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99660 * 180.02562 * 17 16 15 20 20 C 1.37101 * 119.99319 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00494 * 359.97438 * 20 19 17 22 22 C 1.38959 * 119.99732 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99879 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99844 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47035 * 60.00341 * 24 22 20 26 26 H 1.48500 * 109.46783 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47196 * 299.99584 * 24 22 20 28 28 O 1.33661 * 125.42467 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47815 * 269.97495 * 1 2 3 30 30 H 1.09004 * 109.47132 * 29.97959 * 1 2 3 31 31 H 1.09005 * 109.47362 * 149.97217 * 1 2 3 32 32 H 1.09001 * 109.46752 * 270.18673 * 5 4 3 33 33 H 1.08997 * 109.46815 * 30.18807 * 5 4 3 34 34 H 1.09002 * 109.46970 * 150.19214 * 5 4 3 35 35 H 0.97003 * 120.00265 * 0.02562 * 9 7 6 36 36 H 1.09001 * 109.47002 * 299.99701 * 12 10 9 37 37 H 1.08993 * 109.46955 * 60.00138 * 12 10 9 38 38 H 1.09000 * 109.47050 * 179.97438 * 12 10 9 39 39 H 1.09002 * 109.47223 * 54.99994 * 13 10 9 40 40 H 1.09006 * 109.47396 * 175.00204 * 13 10 9 41 41 H 1.09000 * 109.46966 * 300.00238 * 14 13 10 42 42 H 1.08998 * 109.46717 * 60.00358 * 14 13 10 43 43 H 1.00902 * 111.00200 * 303.95826 * 15 14 13 44 44 H 1.08998 * 109.46716 * 300.00033 * 16 15 14 45 45 H 1.09002 * 109.46367 * 60.00145 * 16 15 14 46 46 H 0.96990 * 120.00200 * 0.02562 * 19 17 16 47 47 H 0.96995 * 120.00330 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2640 1.0645 0.0000 4 6 3.5464 0.6864 0.0055 5 6 4.7451 1.5996 0.0133 6 6 3.5708 -0.6768 -0.0007 7 6 4.7636 -1.5313 -0.0012 8 8 5.8719 -1.0289 -0.0009 9 7 4.6316 -2.8726 -0.0020 10 6 5.8225 -3.7257 -0.0019 11 1 6.6079 -3.2533 0.5881 12 6 6.3109 -3.9197 -1.4389 13 6 5.4755 -5.0858 0.6068 14 6 5.1067 -4.9057 2.0808 15 7 4.7741 -6.2116 2.6654 16 6 4.4135 -6.0773 4.0831 17 6 4.0801 -7.4343 4.6475 18 8 4.1369 -8.4167 3.9383 19 7 3.7179 -7.5561 5.9399 20 6 3.4152 -8.7908 6.4534 21 1 3.4665 -9.6656 5.8221 22 6 3.0412 -8.9164 7.7858 23 7 2.9782 -7.8519 8.5537 24 14 2.6280 -10.5985 8.4852 25 1 3.8081 -11.4909 8.3582 26 1 2.2628 -10.4626 9.9182 27 1 1.4851 -11.1792 7.7356 28 8 2.2818 -1.0892 -0.0005 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5143 32 1 5.0371 1.8245 -1.0125 33 1 4.4933 2.5253 0.5307 34 1 5.5720 1.1094 0.5272 35 1 3.7481 -3.2731 -0.0025 36 1 5.5256 -4.3922 -2.0289 37 1 6.5581 -2.9508 -1.8725 38 1 7.1973 -4.5542 -1.4389 39 1 4.6307 -5.5188 0.0711 40 1 6.3360 -5.7502 0.5262 41 1 5.9515 -4.4727 2.6164 42 1 4.2463 -4.2414 2.1614 43 1 4.0361 -6.6630 2.1460 44 1 5.2531 -5.6519 4.6328 45 1 3.5478 -5.4216 4.1771 46 1 3.6714 -6.7704 6.5067 47 1 2.7175 -7.9396 9.4838 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497159075.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:29 Heat of formation + Delta-G solvation = -91.182777 kcal Electronic energy + Delta-G solvation = -28396.564768 eV Core-core repulsion = 24193.419662 eV Total energy + Delta-G solvation = -4203.145105 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.56522 -40.92504 -40.16704 -38.08575 -36.62316 -36.21199 -35.70226 -33.89927 -33.30169 -32.71947 -30.41425 -30.30843 -28.39306 -27.80293 -25.82505 -24.04091 -23.12510 -22.91877 -21.94708 -21.66819 -21.07441 -19.92951 -19.33146 -18.19793 -17.86320 -17.57404 -16.97936 -16.87085 -16.49063 -16.09487 -15.94755 -15.58231 -15.39190 -15.26443 -15.11028 -14.92155 -14.36850 -14.27879 -14.09927 -13.92242 -13.83215 -13.59875 -13.51789 -13.48739 -13.27830 -13.18029 -12.94108 -12.81663 -12.44742 -12.30456 -12.15297 -12.10786 -12.07479 -12.01938 -11.82970 -11.51117 -11.27410 -10.43654 -10.33069 -10.03492 -9.85785 -9.36030 -8.47653 -5.96849 -0.34417 1.24844 1.26492 1.39543 1.41604 1.52701 1.90319 2.03086 2.04361 2.28353 2.85388 2.86096 3.19365 3.45973 3.58270 3.60129 3.86069 3.97819 4.16293 4.25037 4.28130 4.30519 4.40533 4.43461 4.49589 4.57406 4.58081 4.59032 4.64277 4.65388 4.71275 4.78671 4.85259 4.91846 5.00137 5.08856 5.16878 5.25727 5.30164 5.39657 5.41187 5.85989 6.07153 6.20207 6.39946 6.49464 6.58192 6.89408 7.10801 7.54158 8.09003 8.69561 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012849 B = 0.001992 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.690701 B =14053.915469 C =15374.751769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.231 3.769 3 N -0.518 5.518 4 C 0.073 3.927 5 C -0.078 4.078 6 C -0.143 4.143 7 C 0.611 3.389 8 O -0.539 6.539 9 N -0.702 5.702 10 C 0.148 3.852 11 H 0.083 0.917 12 C -0.157 4.157 13 C -0.114 4.114 14 C 0.061 3.939 15 N -0.680 5.680 16 C 0.064 3.936 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.573 5.573 20 C -0.335 4.335 21 H 0.080 0.920 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.270 1.270 28 O -0.192 6.192 29 H 0.115 0.885 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.412 0.588 36 H 0.067 0.933 37 H 0.049 0.951 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.070 0.930 42 H 0.033 0.967 43 H 0.346 0.654 44 H 0.100 0.900 45 H 0.064 0.936 46 H 0.396 0.604 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.511 18.636 -19.430 27.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.026 3.974 3 N -0.249 5.249 4 C -0.051 4.051 5 C -0.135 4.135 6 C -0.198 4.198 7 C 0.397 3.603 8 O -0.419 6.419 9 N -0.353 5.353 10 C 0.044 3.956 11 H 0.101 0.899 12 C -0.215 4.215 13 C -0.152 4.152 14 C -0.068 4.068 15 N -0.313 5.313 16 C -0.068 4.068 17 C 0.225 3.775 18 O -0.508 6.508 19 N -0.210 5.210 20 C -0.465 4.465 21 H 0.098 0.902 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.818 3.182 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.195 1.195 28 O -0.079 6.079 29 H 0.133 0.867 30 H 0.137 0.863 31 H 0.132 0.868 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.248 0.752 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.113 0.887 41 H 0.088 0.912 42 H 0.051 0.949 43 H 0.165 0.835 44 H 0.118 0.882 45 H 0.082 0.918 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.330 18.709 -19.557 27.097 hybrid contribution -1.210 -0.774 0.862 1.675 sum -2.540 17.935 -18.695 26.031 Atomic orbital electron populations 1.20746 0.77285 1.07261 1.06748 1.27645 0.98214 0.77848 0.93737 1.70408 1.01743 1.30924 1.21810 1.22460 0.94194 0.91795 0.96674 1.20411 0.91348 0.97511 1.04260 1.22834 0.82865 0.95241 1.18865 1.16322 0.85156 0.82165 0.76621 1.90843 1.24546 1.74374 1.52140 1.46004 1.11367 1.04633 1.73281 1.21054 0.86833 0.89800 0.97896 0.89867 1.22118 1.02466 1.02121 0.94842 1.21790 1.04119 0.95631 0.93668 1.22030 1.00157 0.88935 0.95632 1.60073 1.48003 1.22141 1.01079 1.21524 1.01264 0.92942 0.91101 1.20837 0.82309 0.91848 0.82496 1.90485 1.58945 1.41436 1.59974 1.41942 1.59993 1.09584 1.09515 1.19652 1.44715 0.87036 0.95056 0.90180 1.26075 0.96596 1.02866 0.95818 1.69666 1.48000 1.30535 1.07993 0.84971 0.78817 0.77157 0.77301 1.19716 1.19526 1.19512 1.84440 1.15830 1.37755 1.69907 0.86679 0.86319 0.86808 0.89109 0.89426 0.89468 0.75207 0.91392 0.93232 0.89930 0.90033 0.88731 0.91156 0.94851 0.83501 0.88209 0.91813 0.77025 0.91260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.37 10.51 71.24 0.75 0.38 16 2 C 0.23 3.81 8.32 88.29 0.73 4.54 16 3 N -0.52 -11.00 11.26 -291.06 -3.28 -14.28 16 4 C 0.07 1.61 7.16 41.83 0.30 1.91 16 5 C -0.08 -1.43 9.87 71.24 0.70 -0.73 16 6 C -0.14 -3.12 7.18 24.05 0.17 -2.95 16 7 C 0.61 13.42 7.75 86.46 0.67 14.09 16 8 O -0.54 -14.17 14.46 -4.31 -0.06 -14.23 16 9 N -0.70 -11.99 4.53 -446.46 -2.02 -14.01 16 10 C 0.15 2.42 2.57 44.99 0.12 2.54 16 11 H 0.08 1.61 7.58 -2.39 -0.02 1.59 16 12 C -0.16 -2.26 9.48 71.98 0.68 -1.57 16 13 C -0.11 -1.90 5.01 30.59 0.15 -1.75 16 14 C 0.06 1.34 5.57 86.30 0.48 1.82 16 15 N -0.68 -20.55 6.13 -517.92 -3.17 -23.72 16 16 C 0.06 2.20 6.17 85.56 0.53 2.72 16 17 C 0.44 20.80 7.82 87.66 0.69 21.49 16 18 O -0.62 -34.25 15.78 -3.07 -0.05 -34.30 16 19 N -0.57 -29.51 5.29 -306.97 -1.62 -31.13 16 20 C -0.34 -19.03 9.68 84.04 0.81 -18.22 16 21 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 22 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 23 N -0.92 -49.79 13.05 21.67 0.28 -49.51 16 24 Si 0.99 42.74 29.55 68.60 2.03 44.77 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 27 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 28 O -0.19 -3.61 10.57 -7.06 -0.07 -3.69 16 29 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.11 0.24 8.14 -2.38 -0.02 0.22 16 32 H 0.09 1.45 8.14 -2.39 -0.02 1.44 16 33 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.09 1.75 6.47 -2.39 -0.02 1.74 16 35 H 0.41 5.85 8.40 -92.71 -0.78 5.07 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 41 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.03 0.69 7.75 -2.39 -0.02 0.67 16 43 H 0.35 10.68 8.43 -89.69 -0.76 9.92 16 44 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 45 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.40 19.40 7.90 -92.72 -0.73 18.67 16 47 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -74.32 402.37 -1.96 -76.28 By element: Atomic # 1 Polarization: 41.08 SS G_CDS: -1.24 Total: 39.84 kcal Atomic # 6 Polarization: 16.74 SS G_CDS: 7.26 Total: 24.00 kcal Atomic # 7 Polarization: -122.85 SS G_CDS: -9.81 Total: -132.66 kcal Atomic # 8 Polarization: -52.04 SS G_CDS: -0.19 Total: -52.22 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -74.32 -1.96 -76.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497159075.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.907 kcal (2) G-P(sol) polarization free energy of solvation -74.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds