Wall clock time and date at job start Tue Mar 31 2020 21:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30615 * 125.42048 * 2 1 4 4 C 1.33695 * 108.99581 * 179.75248 * 3 2 1 5 5 C 1.50692 * 126.27663 * 180.27418 * 4 3 2 6 6 C 1.36344 * 107.44614 * 0.42640 * 4 3 2 7 7 C 1.46721 * 126.64008 * 179.84033 * 6 4 3 8 8 O 1.21690 * 120.00005 * 359.71734 * 7 6 4 9 9 N 1.34778 * 120.00054 * 179.71586 * 7 6 4 10 10 C 1.46500 * 119.99992 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.47120 * 324.99235 * 10 9 7 12 12 C 1.52999 * 109.47548 * 84.99863 * 10 9 7 13 13 C 1.53006 * 109.46857 * 205.00038 * 10 9 7 14 14 C 1.52999 * 109.46997 * 64.99738 * 13 10 9 15 15 N 1.46906 * 109.46897 * 180.02562 * 14 13 10 16 16 C 1.46898 * 110.99888 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.46661 * 180.02562 * 16 15 14 18 18 O 1.21288 * 120.00125 * 359.97438 * 17 16 15 19 19 N 1.34775 * 119.99549 * 179.97438 * 17 16 15 20 20 C 1.37103 * 120.00062 * 179.97438 * 19 17 16 21 21 H 1.08007 * 119.99698 * 0.02562 * 20 19 17 22 22 C 1.38942 * 120.00207 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00271 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00123 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47454 * 89.99743 * 24 22 20 26 26 H 1.48497 * 109.47239 * 210.00393 * 24 22 20 27 27 H 1.48506 * 109.46789 * 329.99864 * 24 22 20 28 28 O 1.33657 * 125.42483 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47199 * 269.98196 * 1 2 3 30 30 H 1.09008 * 109.46882 * 29.97686 * 1 2 3 31 31 H 1.08999 * 109.46771 * 149.97309 * 1 2 3 32 32 H 1.09002 * 109.47125 * 270.18800 * 5 4 3 33 33 H 1.08999 * 109.47473 * 30.18281 * 5 4 3 34 34 H 1.08997 * 109.47284 * 150.18665 * 5 4 3 35 35 H 0.97001 * 119.99750 * 0.02562 * 9 7 6 36 36 H 1.08992 * 109.47188 * 59.99700 * 12 10 9 37 37 H 1.09005 * 109.46713 * 180.02562 * 12 10 9 38 38 H 1.09002 * 109.46911 * 299.99864 * 12 10 9 39 39 H 1.09000 * 109.46866 * 304.99526 * 13 10 9 40 40 H 1.09001 * 109.46611 * 184.99643 * 13 10 9 41 41 H 1.09000 * 109.47486 * 60.00167 * 14 13 10 42 42 H 1.09001 * 109.47362 * 299.99445 * 14 13 10 43 43 H 1.00902 * 110.99923 * 303.95801 * 15 14 13 44 44 H 1.08995 * 109.47296 * 299.99911 * 16 15 14 45 45 H 1.08997 * 109.47334 * 60.00212 * 16 15 14 46 46 H 0.97003 * 120.00664 * 0.02562 * 19 17 16 47 47 H 0.97005 * 120.00698 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2641 1.0644 0.0000 4 6 3.5465 0.6864 0.0055 5 6 4.7452 1.5995 0.0132 6 6 3.5708 -0.6768 -0.0007 7 6 4.7635 -1.5313 -0.0013 8 8 5.8719 -1.0289 -0.0010 9 7 4.6316 -2.8726 -0.0020 10 6 5.8226 -3.7257 -0.0020 11 1 6.6084 -3.2527 -0.5910 12 6 6.3099 -3.9213 1.4351 13 6 5.4760 -5.0852 -0.6125 14 6 5.1082 -4.9035 -2.0864 15 7 4.7748 -6.2088 -2.6724 16 6 4.4151 -6.0729 -4.0902 17 6 4.0797 -7.4290 -4.6554 18 8 4.1354 -8.4120 -3.9471 19 7 3.7179 -7.5495 -5.9481 20 6 3.4133 -8.7833 -6.4626 21 1 3.4628 -9.6586 -5.8318 22 6 3.0398 -8.9074 -7.7951 23 7 2.9790 -7.8424 -8.5625 24 14 2.6240 -10.5884 -8.4959 25 1 1.1729 -10.8518 -8.3227 26 1 2.9639 -10.6201 -9.9411 27 1 3.4050 -11.6297 -7.7809 28 8 2.2818 -1.0891 -0.0005 29 1 -0.3633 -0.0003 1.0276 30 1 -0.3633 0.8903 -0.5135 31 1 -0.3633 -0.8898 -0.5143 32 1 5.0372 1.8245 -1.0126 33 1 4.4934 2.5253 0.5306 34 1 5.5720 1.1094 0.5271 35 1 3.7481 -3.2730 -0.0025 36 1 5.5242 -4.3943 2.0240 37 1 7.1963 -4.5558 1.4349 38 1 6.5568 -2.9528 1.8700 39 1 4.6308 -5.5187 -0.0778 40 1 6.3364 -5.7496 -0.5319 41 1 5.9534 -4.4700 -2.6211 42 1 4.2478 -4.2392 -2.1670 43 1 5.5333 -6.8633 -2.5525 44 1 3.5502 -5.4164 -4.1843 45 1 5.2554 -5.6477 -4.6391 46 1 3.6738 -6.7634 -6.5148 47 1 2.7179 -7.9290 -9.4927 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497159099.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:34 Heat of formation + Delta-G solvation = -63.035961 kcal Electronic energy + Delta-G solvation = -28386.695894 eV Core-core repulsion = 24184.771326 eV Total energy + Delta-G solvation = -4201.924568 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.80787 -40.07876 -38.34136 -37.09971 -35.74201 -35.00316 -33.84547 -33.22221 -31.90808 -31.22654 -29.73849 -29.34916 -27.66733 -26.25728 -24.20653 -23.14944 -22.28119 -22.07912 -21.14009 -20.85469 -19.27630 -18.52877 -17.88687 -17.42970 -16.76327 -16.19734 -16.11989 -15.57956 -15.21440 -14.82876 -14.67199 -14.52136 -14.33269 -13.94276 -13.82160 -13.68880 -13.61643 -13.49103 -13.41636 -13.13028 -13.09349 -12.79771 -12.50454 -12.32605 -12.27864 -11.70040 -11.52448 -11.35320 -11.32616 -11.30451 -11.21321 -11.07039 -10.97022 -10.42286 -10.40607 -10.23196 -9.56935 -9.52461 -9.09559 -8.49035 -8.09382 -7.97621 -6.43020 -3.84055 0.44243 1.99701 2.01775 2.74559 2.79648 3.16812 3.25441 3.31242 3.48832 3.88930 4.00086 4.22008 4.32944 4.34111 4.72441 4.77454 4.80335 4.86458 4.88030 4.96770 5.08265 5.18611 5.21805 5.27279 5.27439 5.28369 5.35038 5.44613 5.49979 5.53965 5.60574 5.62672 5.76495 5.84625 5.89200 5.95251 5.96536 6.02302 6.16284 6.25070 6.98414 7.17167 7.25943 7.53803 7.62771 7.70164 8.04799 8.59652 9.16328 9.52745 10.04033 10.74720 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012835 B = 0.001992 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.091497 B =14056.313048 C =15388.132754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.225 3.775 3 N -0.492 5.492 4 C 0.085 3.915 5 C -0.081 4.081 6 C -0.124 4.124 7 C 0.612 3.388 8 O -0.515 6.515 9 N -0.711 5.711 10 C 0.143 3.857 11 H 0.093 0.907 12 C -0.163 4.163 13 C -0.126 4.126 14 C 0.058 3.942 15 N -0.669 5.669 16 C 0.051 3.949 17 C 0.441 3.559 18 O -0.584 6.584 19 N -0.564 5.564 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 O -0.188 6.188 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.407 0.593 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.028 0.972 42 H 0.069 0.931 43 H 0.349 0.651 44 H 0.084 0.916 45 H 0.043 0.957 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.161 18.159 18.780 26.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.019 3.981 3 N -0.222 5.222 4 C -0.040 4.040 5 C -0.138 4.138 6 C -0.179 4.179 7 C 0.398 3.602 8 O -0.393 6.393 9 N -0.362 5.362 10 C 0.039 3.961 11 H 0.111 0.889 12 C -0.221 4.221 13 C -0.164 4.164 14 C -0.072 4.072 15 N -0.302 5.302 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 O -0.075 6.075 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.114 0.886 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.242 0.758 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.046 0.954 42 H 0.087 0.913 43 H 0.169 0.831 44 H 0.103 0.897 45 H 0.061 0.939 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.046 18.381 19.248 26.615 hybrid contribution 0.240 -0.984 -1.296 1.645 sum 0.285 17.396 17.953 25.000 Atomic orbital electron populations 1.20427 0.80590 1.05868 1.05210 1.26606 0.96725 0.78536 0.96212 1.70375 1.01618 1.29952 1.20291 1.22093 0.93498 0.91289 0.97087 1.20402 0.92136 0.97438 1.03862 1.22857 0.82442 0.95167 1.17435 1.16278 0.85411 0.81704 0.76831 1.90859 1.23682 1.73893 1.50884 1.46049 1.10936 1.05168 1.74018 1.21093 0.87279 0.90409 0.97325 0.88921 1.22171 1.01686 1.02464 0.95793 1.21889 1.03337 0.95336 0.95852 1.21969 0.99414 0.91862 0.93919 1.60075 1.46032 1.08995 1.15059 1.21666 1.00582 0.97435 0.88535 1.19801 0.84595 0.89860 0.83132 1.90517 1.57969 1.39230 1.59073 1.41873 1.59399 1.10187 1.08575 1.19707 1.42386 0.86557 0.94261 0.87905 1.25270 0.97438 0.99160 0.96113 1.69611 1.48217 1.28893 1.07605 0.85850 0.78847 0.81687 0.77856 1.20372 1.20926 1.19411 1.84446 1.16129 1.37343 1.69576 0.88299 0.87599 0.88624 0.89859 0.90448 0.88627 0.75795 0.92190 0.91125 0.92044 0.90062 0.89845 0.95412 0.91295 0.83148 0.89734 0.93883 0.77457 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.27 10.51 36.01 0.38 0.10 16 2 C 0.22 2.04 8.32 -12.79 -0.11 1.94 16 3 N -0.49 -5.44 11.26 -7.07 -0.08 -5.52 16 4 C 0.08 0.95 7.16 -82.47 -0.59 0.36 16 5 C -0.08 -0.74 9.87 36.00 0.36 -0.39 16 6 C -0.12 -1.39 7.18 -36.84 -0.26 -1.65 16 7 C 0.61 6.86 7.75 -12.83 -0.10 6.77 16 8 O -0.52 -6.73 14.46 5.20 0.08 -6.66 16 9 N -0.71 -6.58 4.53 -55.10 -0.25 -6.83 16 10 C 0.14 1.26 2.57 -67.93 -0.17 1.09 16 11 H 0.09 0.92 7.58 -51.93 -0.39 0.53 16 12 C -0.16 -1.28 9.48 37.16 0.35 -0.92 16 13 C -0.13 -1.17 5.01 -26.73 -0.13 -1.30 16 14 C 0.06 0.69 5.57 -3.82 -0.02 0.67 16 15 N -0.67 -10.56 6.12 -115.06 -0.70 -11.27 16 16 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 17 C 0.44 10.45 7.82 -10.98 -0.09 10.37 16 18 O -0.58 -15.86 15.78 5.55 0.09 -15.77 16 19 N -0.56 -14.37 5.29 -10.96 -0.06 -14.43 16 20 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 21 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.62 13.05 55.49 0.72 -23.89 16 24 Si 0.93 21.05 29.55 -169.99 -5.02 16.02 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 O -0.19 -1.91 10.57 4.47 0.05 -1.86 16 29 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.11 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.10 0.91 6.47 -51.93 -0.34 0.58 16 35 H 0.41 3.36 8.40 -40.82 -0.34 3.02 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.82 7.75 -51.93 -0.40 0.42 16 43 H 0.35 5.64 8.43 -39.29 -0.33 5.31 16 44 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 47 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 402.37 15.07 6.06 6.06 Total: -1.00 -34.21 402.37 -6.91 -41.13 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -7.14 Total: 13.18 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: -0.66 Total: 9.85 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: -0.37 Total: -61.95 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: 0.21 Total: -24.29 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.21 -6.91 -41.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497159099.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.910 kcal (2) G-P(sol) polarization free energy of solvation -34.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds