Wall clock time and date at job start Tue Mar 31 2020 21:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30615 * 125.42048 * 2 1 4 4 C 1.33695 * 108.99581 * 179.75248 * 3 2 1 5 5 C 1.50692 * 126.27663 * 180.27418 * 4 3 2 6 6 C 1.36344 * 107.44614 * 0.42640 * 4 3 2 7 7 C 1.46721 * 126.64008 * 179.84033 * 6 4 3 8 8 O 1.21690 * 120.00005 * 359.71734 * 7 6 4 9 9 N 1.34778 * 120.00054 * 179.71586 * 7 6 4 10 10 C 1.46500 * 119.99992 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.47120 * 324.99235 * 10 9 7 12 12 C 1.52999 * 109.47548 * 84.99863 * 10 9 7 13 13 C 1.53006 * 109.46857 * 205.00038 * 10 9 7 14 14 C 1.52999 * 109.46997 * 64.99738 * 13 10 9 15 15 N 1.46906 * 109.46897 * 180.02562 * 14 13 10 16 16 C 1.46898 * 110.99888 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.46661 * 180.02562 * 16 15 14 18 18 O 1.21288 * 120.00125 * 359.97438 * 17 16 15 19 19 N 1.34775 * 119.99549 * 179.97438 * 17 16 15 20 20 C 1.37103 * 120.00062 * 179.97438 * 19 17 16 21 21 H 1.08007 * 119.99698 * 0.02562 * 20 19 17 22 22 C 1.38942 * 120.00207 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00271 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00123 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47454 * 89.99743 * 24 22 20 26 26 H 1.48497 * 109.47239 * 210.00393 * 24 22 20 27 27 H 1.48506 * 109.46789 * 329.99864 * 24 22 20 28 28 O 1.33657 * 125.42483 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47199 * 269.98196 * 1 2 3 30 30 H 1.09008 * 109.46882 * 29.97686 * 1 2 3 31 31 H 1.08999 * 109.46771 * 149.97309 * 1 2 3 32 32 H 1.09002 * 109.47125 * 270.18800 * 5 4 3 33 33 H 1.08999 * 109.47473 * 30.18281 * 5 4 3 34 34 H 1.08997 * 109.47284 * 150.18665 * 5 4 3 35 35 H 0.97001 * 119.99750 * 0.02562 * 9 7 6 36 36 H 1.08992 * 109.47188 * 59.99700 * 12 10 9 37 37 H 1.09005 * 109.46713 * 180.02562 * 12 10 9 38 38 H 1.09002 * 109.46911 * 299.99864 * 12 10 9 39 39 H 1.09000 * 109.46866 * 304.99526 * 13 10 9 40 40 H 1.09001 * 109.46611 * 184.99643 * 13 10 9 41 41 H 1.09000 * 109.47486 * 60.00167 * 14 13 10 42 42 H 1.09001 * 109.47362 * 299.99445 * 14 13 10 43 43 H 1.00902 * 110.99923 * 303.95801 * 15 14 13 44 44 H 1.08995 * 109.47296 * 299.99911 * 16 15 14 45 45 H 1.08997 * 109.47334 * 60.00212 * 16 15 14 46 46 H 0.97003 * 120.00664 * 0.02562 * 19 17 16 47 47 H 0.97005 * 120.00698 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2641 1.0644 0.0000 4 6 3.5465 0.6864 0.0055 5 6 4.7452 1.5995 0.0132 6 6 3.5708 -0.6768 -0.0007 7 6 4.7635 -1.5313 -0.0013 8 8 5.8719 -1.0289 -0.0010 9 7 4.6316 -2.8726 -0.0020 10 6 5.8226 -3.7257 -0.0020 11 1 6.6084 -3.2527 -0.5910 12 6 6.3099 -3.9213 1.4351 13 6 5.4760 -5.0852 -0.6125 14 6 5.1082 -4.9035 -2.0864 15 7 4.7748 -6.2088 -2.6724 16 6 4.4151 -6.0729 -4.0902 17 6 4.0797 -7.4290 -4.6554 18 8 4.1354 -8.4120 -3.9471 19 7 3.7179 -7.5495 -5.9481 20 6 3.4133 -8.7833 -6.4626 21 1 3.4628 -9.6586 -5.8318 22 6 3.0398 -8.9074 -7.7951 23 7 2.9790 -7.8424 -8.5625 24 14 2.6240 -10.5884 -8.4959 25 1 1.1729 -10.8518 -8.3227 26 1 2.9639 -10.6201 -9.9411 27 1 3.4050 -11.6297 -7.7809 28 8 2.2818 -1.0891 -0.0005 29 1 -0.3633 -0.0003 1.0276 30 1 -0.3633 0.8903 -0.5135 31 1 -0.3633 -0.8898 -0.5143 32 1 5.0372 1.8245 -1.0126 33 1 4.4934 2.5253 0.5306 34 1 5.5720 1.1094 0.5271 35 1 3.7481 -3.2730 -0.0025 36 1 5.5242 -4.3943 2.0240 37 1 7.1963 -4.5558 1.4349 38 1 6.5568 -2.9528 1.8700 39 1 4.6308 -5.5187 -0.0778 40 1 6.3364 -5.7496 -0.5319 41 1 5.9534 -4.4700 -2.6211 42 1 4.2478 -4.2392 -2.1670 43 1 5.5333 -6.8633 -2.5525 44 1 3.5502 -5.4164 -4.1843 45 1 5.2554 -5.6477 -4.6391 46 1 3.6738 -6.7634 -6.5148 47 1 2.7179 -7.9290 -9.4927 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497159099.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:33 Heat of formation + Delta-G solvation = -91.360331 kcal Electronic energy + Delta-G solvation = -28387.924131 eV Core-core repulsion = 24184.771326 eV Total energy + Delta-G solvation = -4203.152805 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.55437 -40.91396 -40.16893 -38.07706 -36.61710 -36.20876 -35.70423 -33.88752 -33.30269 -32.71057 -30.41209 -30.30034 -28.38387 -27.80465 -25.82757 -24.02273 -23.13405 -22.90904 -21.93173 -21.64366 -21.08251 -19.93399 -19.32145 -18.18502 -17.86616 -17.55826 -17.04299 -16.82664 -16.48177 -16.09143 -15.93850 -15.57019 -15.42114 -15.25881 -15.06855 -14.79832 -14.43783 -14.32318 -14.07885 -13.92375 -13.84759 -13.63131 -13.50781 -13.50013 -13.25292 -13.15591 -12.94940 -12.82268 -12.43696 -12.27098 -12.15997 -12.12379 -12.08222 -12.01311 -11.80775 -11.51885 -11.26364 -10.40450 -10.34540 -10.03485 -9.84566 -9.37470 -8.47909 -5.97064 -0.33243 1.25569 1.28493 1.37639 1.41550 1.54427 1.91153 2.02869 2.05666 2.28170 2.85554 2.86726 3.19179 3.45344 3.59321 3.61165 3.91056 3.99045 4.06904 4.26489 4.29453 4.31810 4.40371 4.45398 4.50412 4.58074 4.59298 4.60220 4.64886 4.65170 4.71932 4.79538 4.86262 4.88012 5.00443 5.09224 5.17768 5.26332 5.30234 5.39721 5.41020 5.85817 6.06984 6.21553 6.38676 6.50635 6.57998 6.90164 7.10796 7.54044 8.08835 8.69524 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012835 B = 0.001992 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.091497 B =14056.313048 C =15388.132754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.231 3.769 3 N -0.518 5.518 4 C 0.073 3.927 5 C -0.078 4.078 6 C -0.143 4.143 7 C 0.612 3.388 8 O -0.540 6.540 9 N -0.702 5.702 10 C 0.148 3.852 11 H 0.083 0.917 12 C -0.158 4.158 13 C -0.115 4.115 14 C 0.061 3.939 15 N -0.680 5.680 16 C 0.064 3.936 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.080 0.920 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.270 1.270 26 H -0.271 1.271 27 H -0.272 1.272 28 O -0.191 6.191 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.412 0.588 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.049 0.951 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.033 0.967 42 H 0.070 0.930 43 H 0.346 0.654 44 H 0.101 0.899 45 H 0.063 0.937 46 H 0.396 0.604 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.599 18.358 19.015 26.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.026 3.974 3 N -0.249 5.249 4 C -0.051 4.051 5 C -0.135 4.135 6 C -0.198 4.198 7 C 0.398 3.602 8 O -0.420 6.420 9 N -0.353 5.353 10 C 0.044 3.956 11 H 0.101 0.899 12 C -0.216 4.216 13 C -0.153 4.153 14 C -0.068 4.068 15 N -0.312 5.312 16 C -0.069 4.069 17 C 0.225 3.775 18 O -0.508 6.508 19 N -0.211 5.211 20 C -0.463 4.463 21 H 0.098 0.902 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.818 3.182 25 H -0.196 1.196 26 H -0.196 1.196 27 H -0.197 1.197 28 O -0.079 6.079 29 H 0.138 0.862 30 H 0.135 0.865 31 H 0.129 0.871 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.249 0.751 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.068 0.932 39 H 0.101 0.899 40 H 0.112 0.888 41 H 0.051 0.949 42 H 0.088 0.912 43 H 0.165 0.835 44 H 0.119 0.881 45 H 0.081 0.919 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.722 18.603 19.487 26.950 hybrid contribution 0.424 -0.998 -1.324 1.711 sum -0.299 17.606 18.163 25.297 Atomic orbital electron populations 1.20747 0.77306 1.07103 1.06892 1.27644 0.98220 0.77844 0.93735 1.70405 1.01739 1.30908 1.21835 1.22458 0.94197 0.91774 0.96710 1.20407 0.91373 0.97563 1.04151 1.22832 0.82880 0.95245 1.18848 1.16320 0.85156 0.82150 0.76609 1.90838 1.24523 1.74391 1.52239 1.46019 1.11442 1.04636 1.73196 1.21059 0.86811 0.89812 0.97897 0.89881 1.22121 1.02459 1.02141 0.94847 1.21795 1.03821 0.95640 0.94022 1.22031 0.99668 0.89899 0.95217 1.60085 1.46439 1.10947 1.13754 1.21524 1.01981 0.93579 0.89771 1.20834 0.82614 0.91762 0.82244 1.90485 1.59127 1.41379 1.59826 1.41952 1.60052 1.09625 1.09440 1.19681 1.44666 0.87039 0.94963 0.90196 1.26069 0.96608 1.02855 0.95841 1.69673 1.48043 1.30475 1.08024 0.84912 0.78726 0.77162 0.77448 1.19572 1.19568 1.19670 1.84447 1.15845 1.37758 1.69855 0.86184 0.86521 0.87112 0.89463 0.89265 0.89290 0.75119 0.91467 0.89824 0.93220 0.89859 0.88834 0.94900 0.91153 0.83497 0.88135 0.91891 0.77025 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.40 10.51 71.24 0.75 0.34 16 2 C 0.23 3.92 8.32 88.29 0.73 4.66 16 3 N -0.52 -11.17 11.26 -291.07 -3.28 -14.45 16 4 C 0.07 1.63 7.16 41.83 0.30 1.93 16 5 C -0.08 -1.43 9.87 71.23 0.70 -0.73 16 6 C -0.14 -3.18 7.18 24.05 0.17 -3.01 16 7 C 0.61 13.61 7.75 86.46 0.67 14.28 16 8 O -0.54 -14.23 14.46 -4.32 -0.06 -14.29 16 9 N -0.70 -12.39 4.53 -446.44 -2.02 -14.41 16 10 C 0.15 2.43 2.57 44.99 0.12 2.54 16 11 H 0.08 1.57 7.58 -2.38 -0.02 1.56 16 12 C -0.16 -2.24 9.48 71.98 0.68 -1.56 16 13 C -0.11 -1.92 5.01 30.60 0.15 -1.76 16 14 C 0.06 1.33 5.57 86.30 0.48 1.81 16 15 N -0.68 -20.53 6.12 -517.92 -3.17 -23.70 16 16 C 0.06 2.19 6.17 85.56 0.53 2.72 16 17 C 0.44 20.82 7.82 87.66 0.69 21.50 16 18 O -0.62 -34.24 15.78 -3.05 -0.05 -34.29 16 19 N -0.57 -29.52 5.29 -306.98 -1.62 -31.15 16 20 C -0.33 -18.98 9.68 84.04 0.81 -18.16 16 21 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 22 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 23 N -0.92 -49.80 13.05 21.66 0.28 -49.51 16 24 Si 0.99 42.77 29.55 68.60 2.03 44.79 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 26 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 27 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 28 O -0.19 -3.74 10.57 -6.93 -0.07 -3.81 16 29 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.12 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 34 H 0.09 1.75 6.47 -2.39 -0.02 1.73 16 35 H 0.41 6.34 8.40 -92.71 -0.78 5.56 16 36 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16 39 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 40 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.07 1.53 7.75 -2.39 -0.02 1.52 16 43 H 0.35 10.83 8.43 -89.69 -0.76 10.08 16 44 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 45 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.40 19.40 7.90 -92.71 -0.73 18.67 16 47 H 0.28 14.04 8.31 -92.70 -0.77 13.27 16 Total: -1.00 -74.14 402.37 -1.95 -76.10 By element: Atomic # 1 Polarization: 41.69 SS G_CDS: -1.24 Total: 40.45 kcal Atomic # 6 Polarization: 17.02 SS G_CDS: 7.26 Total: 24.27 kcal Atomic # 7 Polarization: -123.41 SS G_CDS: -9.81 Total: -133.22 kcal Atomic # 8 Polarization: -52.21 SS G_CDS: -0.18 Total: -52.39 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -74.14 -1.95 -76.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497159099.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.265 kcal (2) G-P(sol) polarization free energy of solvation -74.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds