Wall clock time and date at job start Tue Mar 31 2020 22:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.47058 * 2 1 4 4 C 1.35315 * 126.66744 * 90.00897 * 3 2 1 5 5 C 1.42274 * 103.92180 * 180.24413 * 4 3 2 6 6 C 1.48326 * 126.93640 * 179.75467 * 5 4 3 7 7 O 1.21495 * 120.00375 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99834 * 180.02562 * 6 5 4 9 9 C 1.46506 * 120.00011 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47029 * 325.00232 * 9 8 6 11 11 C 1.53002 * 109.47146 * 84.99404 * 9 8 6 12 12 C 1.52998 * 109.47346 * 204.99749 * 9 8 6 13 13 C 1.52999 * 109.47004 * 64.99740 * 12 9 8 14 14 N 1.46900 * 109.47174 * 180.02562 * 13 12 9 15 15 C 1.46890 * 111.00459 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47751 * 180.02562 * 15 14 13 17 17 O 1.21297 * 119.99407 * 359.97438 * 16 15 14 18 18 N 1.34778 * 120.00549 * 180.02562 * 16 15 14 19 19 C 1.37099 * 120.00183 * 179.97438 * 18 16 15 20 20 H 1.08000 * 119.99735 * 359.97438 * 19 18 16 21 21 C 1.38944 * 119.99874 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00124 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99838 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47320 * 60.00325 * 23 21 19 25 25 H 1.48506 * 109.47119 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47244 * 299.99955 * 23 21 19 27 27 N 1.30987 * 106.12343 * 359.62919 * 5 4 3 28 28 O 1.20907 * 111.43916 * 0.39539 * 27 5 4 29 29 H 1.09003 * 109.46910 * 299.99560 * 1 2 3 30 30 H 1.08995 * 109.47509 * 59.99361 * 1 2 3 31 31 H 1.08996 * 109.47148 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46636 * 240.00068 * 2 1 3 33 33 H 1.08995 * 109.47509 * 120.00638 * 2 1 3 34 34 H 1.08002 * 128.03456 * 359.97329 * 4 3 2 35 35 H 0.96994 * 120.00301 * 359.97438 * 8 6 5 36 36 H 1.09005 * 109.46903 * 60.00358 * 11 9 8 37 37 H 1.08999 * 109.47405 * 180.02562 * 11 9 8 38 38 H 1.09002 * 109.47391 * 300.00413 * 11 9 8 39 39 H 1.08996 * 109.46761 * 185.00313 * 12 9 8 40 40 H 1.08997 * 109.46978 * 304.99899 * 12 9 8 41 41 H 1.08993 * 109.47283 * 300.00425 * 13 12 9 42 42 H 1.08997 * 109.47124 * 60.00248 * 13 12 9 43 43 H 1.00903 * 110.99738 * 303.95816 * 14 13 12 44 44 H 1.09004 * 109.47137 * 300.00304 * 15 14 13 45 45 H 1.09007 * 109.47271 * 59.99645 * 15 14 13 46 46 H 0.97005 * 119.99535 * 359.97438 * 18 16 15 47 47 H 0.97001 * 120.00289 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3018 2.1826 1.0854 5 6 2.7335 3.4216 0.5353 6 6 3.1533 4.6313 1.2841 7 8 3.1492 4.6256 2.4990 8 7 3.5383 5.7371 0.6166 9 6 3.9524 6.9321 1.3562 10 1 3.3580 7.0207 2.2655 11 6 5.4330 6.8166 1.7241 12 6 3.7386 8.1710 0.4843 13 6 2.2431 8.3566 0.2198 14 7 2.0379 9.5458 -0.6178 15 6 0.6103 9.7564 -0.8925 16 6 0.4395 10.9818 -1.7527 17 8 1.4116 11.6176 -2.1022 18 7 -0.7933 11.3720 -2.1329 19 6 -0.9486 12.4872 -2.9150 20 1 -0.0831 13.0533 -3.2262 21 6 -2.2195 12.8890 -3.3074 22 7 -3.2726 12.2005 -2.9283 23 14 -2.4310 14.4081 -4.3737 24 1 -1.7033 14.2193 -5.6543 25 1 -3.8744 14.6213 -4.6508 26 1 -1.8839 15.5918 -3.6632 27 7 2.6880 3.2775 -0.7658 28 8 2.2986 2.1755 -1.0751 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.2066 1.9140 2.1271 35 1 3.5412 5.7418 -0.3533 36 1 6.0275 6.7279 0.8147 37 1 5.7410 7.7054 2.2747 38 1 5.5853 5.9339 2.3452 39 1 4.1284 9.0491 0.9991 40 1 4.2620 8.0432 -0.4632 41 1 1.8534 7.4785 -0.2949 42 1 1.7197 8.4844 1.1673 43 1 2.4482 10.3633 -0.1918 44 1 0.2088 8.8877 -1.4144 45 1 0.0759 9.8945 0.0475 46 1 -1.5706 10.8637 -1.8530 47 1 -4.1599 12.4812 -3.2019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497307840.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:31 Heat of formation + Delta-G solvation = -25.315784 kcal Electronic energy + Delta-G solvation = -28033.999654 eV Core-core repulsion = 23833.710756 eV Total energy + Delta-G solvation = -4200.288898 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.45822 -40.11381 -38.31444 -37.03066 -35.42240 -35.02738 -34.28378 -33.81428 -31.81696 -31.20208 -30.53884 -29.28907 -26.27985 -25.45747 -24.56930 -24.06057 -22.95607 -22.20780 -21.12977 -20.45577 -19.22351 -18.22613 -17.93152 -17.83165 -17.24426 -16.58378 -16.12821 -15.55897 -15.25965 -15.12611 -14.98659 -14.56822 -14.41040 -14.26194 -13.89859 -13.85994 -13.76211 -13.65446 -13.19170 -13.10957 -12.79996 -12.39917 -12.29358 -12.25201 -12.01479 -11.67487 -11.53983 -11.50231 -11.30126 -11.27234 -11.03842 -10.94709 -10.83093 -10.54788 -10.43659 -10.20646 -9.87774 -9.49392 -9.45065 -8.46303 -8.06389 -7.95296 -6.40814 -3.81803 0.74825 1.26979 2.47558 2.65798 2.84288 3.20771 3.26242 3.30763 3.58999 3.91400 3.99909 4.05188 4.25284 4.43023 4.59402 4.61802 4.70142 4.76510 4.80270 4.90284 4.93788 5.10341 5.12477 5.24060 5.27215 5.29877 5.31518 5.40826 5.47078 5.47997 5.53949 5.62955 5.65473 5.79175 5.88130 5.91841 5.98846 6.04817 6.18784 6.27698 7.06060 7.20241 7.55711 7.60705 7.66029 7.78091 8.06835 8.62047 9.18390 9.54994 10.06496 10.76883 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011490 B = 0.001939 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.406103 B =14434.761600 C =16349.539271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.043 4.043 3 C -0.030 4.030 4 C -0.182 4.182 5 C -0.027 4.027 6 C 0.601 3.399 7 O -0.524 6.524 8 N -0.706 5.706 9 C 0.143 3.857 10 H 0.092 0.908 11 C -0.163 4.163 12 C -0.126 4.126 13 C 0.058 3.942 14 N -0.669 5.669 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.584 6.584 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.932 3.068 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 N -0.329 5.329 28 O 0.125 5.875 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.180 0.820 35 H 0.409 0.591 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.027 0.973 43 H 0.349 0.651 44 H 0.085 0.915 45 H 0.043 0.957 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.386 -25.758 9.876 29.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.081 4.081 3 C -0.093 4.093 4 C -0.205 4.205 5 C -0.186 4.186 6 C 0.384 3.616 7 O -0.398 6.398 8 N -0.358 5.358 9 C 0.039 3.961 10 H 0.110 0.890 11 C -0.221 4.221 12 C -0.164 4.164 13 C -0.072 4.072 14 N -0.301 5.301 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.759 3.241 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 N -0.029 5.029 28 O 0.048 5.952 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.118 0.882 34 H 0.198 0.802 35 H 0.244 0.756 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.045 0.955 43 H 0.168 0.832 44 H 0.103 0.897 45 H 0.061 0.939 46 H 0.225 0.775 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.252 -24.714 8.901 28.576 hybrid contribution -1.186 0.430 0.752 1.469 sum 10.065 -24.284 9.653 28.003 Atomic orbital electron populations 1.21823 0.93152 1.03007 1.03163 1.20177 0.96895 0.85936 1.05063 1.24570 1.02072 0.97241 0.85396 1.22422 1.05041 0.91507 1.01525 1.23512 1.06835 0.97981 0.90238 1.16860 0.77152 0.81199 0.86349 1.90800 1.53919 1.82646 1.12456 1.46021 1.66272 1.12521 1.11034 1.21097 0.96092 0.83202 0.95755 0.88996 1.22170 0.95162 1.02765 1.02008 1.21886 0.97113 0.96689 1.00722 1.21965 0.95364 0.94628 0.95201 1.60077 1.13888 1.06530 1.49600 1.21665 0.89174 0.98744 0.98633 1.19802 0.84184 0.87469 0.85917 1.90518 1.38905 1.57399 1.59956 1.41862 1.06309 1.26071 1.45778 1.19659 0.93929 1.03254 1.26105 0.87957 1.25271 0.94902 0.99402 0.98417 1.69606 0.98706 1.40023 1.46015 0.85906 0.76993 0.81136 0.80106 1.19862 1.20978 1.19920 1.74210 1.13813 0.99377 1.15500 1.84794 1.59733 1.17157 1.33474 0.91916 0.91805 0.91015 0.88987 0.88209 0.80249 0.75554 0.92139 0.91099 0.92101 0.89827 0.90014 0.91268 0.95454 0.83176 0.89720 0.93909 0.77457 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 9.89 37.16 0.37 -0.17 16 2 C -0.04 -0.14 6.50 -27.88 -0.18 -0.33 16 3 C -0.03 -0.21 6.73 -35.35 -0.24 -0.45 16 4 C -0.18 -1.56 10.92 -39.07 -0.43 -1.99 16 5 C -0.03 -0.29 7.19 -82.53 -0.59 -0.88 16 6 C 0.60 7.18 7.81 -12.11 -0.09 7.08 16 7 O -0.52 -7.48 16.61 5.37 0.09 -7.39 16 8 N -0.71 -7.28 4.53 -54.59 -0.25 -7.52 16 9 C 0.14 1.38 2.57 -67.93 -0.17 1.21 16 10 H 0.09 0.99 7.58 -51.93 -0.39 0.60 16 11 C -0.16 -1.39 9.48 37.16 0.35 -1.04 16 12 C -0.13 -1.26 5.01 -26.73 -0.13 -1.40 16 13 C 0.06 0.73 5.57 -3.82 -0.02 0.71 16 14 N -0.67 -10.97 6.13 -115.07 -0.70 -11.67 16 15 C 0.05 0.93 6.17 -4.98 -0.03 0.89 16 16 C 0.44 10.66 7.82 -10.99 -0.09 10.57 16 17 O -0.58 -16.11 15.78 5.54 0.09 -16.02 16 18 N -0.56 -14.59 5.29 -10.96 -0.06 -14.65 16 19 C -0.30 -8.50 9.68 -14.93 -0.14 -8.64 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.86 13.05 55.50 0.72 -24.14 16 23 Si 0.93 21.29 29.55 -169.99 -5.02 16.26 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 N -0.33 -3.59 11.84 33.29 0.39 -3.20 16 28 O 0.12 1.16 11.18 17.23 0.19 1.35 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.09 0.21 8.14 -51.92 -0.42 -0.22 16 33 H 0.10 0.18 8.14 -51.93 -0.42 -0.25 16 34 H 0.18 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.41 3.97 8.36 -40.82 -0.34 3.63 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.89 7.75 -51.93 -0.40 0.48 16 42 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.35 5.82 8.43 -39.29 -0.33 5.48 16 44 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 45 H 0.04 0.72 8.14 -51.92 -0.42 0.29 16 46 H 0.39 9.72 7.90 -40.82 -0.32 9.40 16 47 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 405.52 15.07 6.11 6.11 Total: -1.00 -34.06 405.52 -7.16 -41.22 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -7.22 Total: 13.58 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -1.50 Total: 6.07 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: 0.11 Total: -61.18 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: 0.37 Total: -22.06 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.06 -7.16 -41.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497307840.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.906 kcal (2) G-P(sol) polarization free energy of solvation -34.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds