Wall clock time and date at job start Tue Mar 31 2020 22:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.47058 * 2 1 4 4 C 1.35315 * 126.66744 * 90.00897 * 3 2 1 5 5 C 1.42274 * 103.92180 * 180.24413 * 4 3 2 6 6 C 1.48326 * 126.93640 * 179.75467 * 5 4 3 7 7 O 1.21495 * 120.00375 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99834 * 180.02562 * 6 5 4 9 9 C 1.46506 * 120.00011 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47029 * 325.00232 * 9 8 6 11 11 C 1.53002 * 109.47146 * 84.99404 * 9 8 6 12 12 C 1.52998 * 109.47346 * 204.99749 * 9 8 6 13 13 C 1.52999 * 109.47004 * 64.99740 * 12 9 8 14 14 N 1.46900 * 109.47174 * 180.02562 * 13 12 9 15 15 C 1.46890 * 111.00459 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47751 * 180.02562 * 15 14 13 17 17 O 1.21297 * 119.99407 * 359.97438 * 16 15 14 18 18 N 1.34778 * 120.00549 * 180.02562 * 16 15 14 19 19 C 1.37099 * 120.00183 * 179.97438 * 18 16 15 20 20 H 1.08000 * 119.99735 * 359.97438 * 19 18 16 21 21 C 1.38944 * 119.99874 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00124 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99838 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47320 * 60.00325 * 23 21 19 25 25 H 1.48506 * 109.47119 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47244 * 299.99955 * 23 21 19 27 27 N 1.30987 * 106.12343 * 359.62919 * 5 4 3 28 28 O 1.20907 * 111.43916 * 0.39539 * 27 5 4 29 29 H 1.09003 * 109.46910 * 299.99560 * 1 2 3 30 30 H 1.08995 * 109.47509 * 59.99361 * 1 2 3 31 31 H 1.08996 * 109.47148 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46636 * 240.00068 * 2 1 3 33 33 H 1.08995 * 109.47509 * 120.00638 * 2 1 3 34 34 H 1.08002 * 128.03456 * 359.97329 * 4 3 2 35 35 H 0.96994 * 120.00301 * 359.97438 * 8 6 5 36 36 H 1.09005 * 109.46903 * 60.00358 * 11 9 8 37 37 H 1.08999 * 109.47405 * 180.02562 * 11 9 8 38 38 H 1.09002 * 109.47391 * 300.00413 * 11 9 8 39 39 H 1.08996 * 109.46761 * 185.00313 * 12 9 8 40 40 H 1.08997 * 109.46978 * 304.99899 * 12 9 8 41 41 H 1.08993 * 109.47283 * 300.00425 * 13 12 9 42 42 H 1.08997 * 109.47124 * 60.00248 * 13 12 9 43 43 H 1.00903 * 110.99738 * 303.95816 * 14 13 12 44 44 H 1.09004 * 109.47137 * 300.00304 * 15 14 13 45 45 H 1.09007 * 109.47271 * 59.99645 * 15 14 13 46 46 H 0.97005 * 119.99535 * 359.97438 * 18 16 15 47 47 H 0.97001 * 120.00289 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3018 2.1826 1.0854 5 6 2.7335 3.4216 0.5353 6 6 3.1533 4.6313 1.2841 7 8 3.1492 4.6256 2.4990 8 7 3.5383 5.7371 0.6166 9 6 3.9524 6.9321 1.3562 10 1 3.3580 7.0207 2.2655 11 6 5.4330 6.8166 1.7241 12 6 3.7386 8.1710 0.4843 13 6 2.2431 8.3566 0.2198 14 7 2.0379 9.5458 -0.6178 15 6 0.6103 9.7564 -0.8925 16 6 0.4395 10.9818 -1.7527 17 8 1.4116 11.6176 -2.1022 18 7 -0.7933 11.3720 -2.1329 19 6 -0.9486 12.4872 -2.9150 20 1 -0.0831 13.0533 -3.2262 21 6 -2.2195 12.8890 -3.3074 22 7 -3.2726 12.2005 -2.9283 23 14 -2.4310 14.4081 -4.3737 24 1 -1.7033 14.2193 -5.6543 25 1 -3.8744 14.6213 -4.6508 26 1 -1.8839 15.5918 -3.6632 27 7 2.6880 3.2775 -0.7658 28 8 2.2986 2.1755 -1.0751 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.2066 1.9140 2.1271 35 1 3.5412 5.7418 -0.3533 36 1 6.0275 6.7279 0.8147 37 1 5.7410 7.7054 2.2747 38 1 5.5853 5.9339 2.3452 39 1 4.1284 9.0491 0.9991 40 1 4.2620 8.0432 -0.4632 41 1 1.8534 7.4785 -0.2949 42 1 1.7197 8.4844 1.1673 43 1 2.4482 10.3633 -0.1918 44 1 0.2088 8.8877 -1.4144 45 1 0.0759 9.8945 0.0475 46 1 -1.5706 10.8637 -1.8530 47 1 -4.1599 12.4812 -3.2019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497307840.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:30 Heat of formation + Delta-G solvation = -50.767260 kcal Electronic energy + Delta-G solvation = -28035.103313 eV Core-core repulsion = 23833.710756 eV Total energy + Delta-G solvation = -4201.392557 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.18203 -41.01970 -40.18456 -38.08546 -36.38940 -35.86389 -35.73576 -35.01963 -33.31331 -32.67182 -31.10932 -30.37487 -27.83646 -26.34758 -25.72423 -24.97776 -23.70529 -23.22526 -21.98108 -21.28271 -21.05719 -19.93338 -18.94294 -18.54620 -18.09305 -17.84608 -17.42481 -17.02484 -16.49257 -16.18462 -16.00052 -15.66426 -15.50770 -15.37858 -15.14262 -15.03508 -14.80469 -14.44093 -14.34753 -13.91358 -13.68965 -13.51184 -13.50573 -13.28090 -12.99692 -12.89875 -12.83712 -12.45903 -12.41871 -12.30995 -12.20367 -12.13233 -11.88643 -11.83950 -11.60027 -11.52276 -11.47774 -10.49009 -10.40036 -10.30497 -10.04565 -9.39975 -8.48486 -5.97869 -0.01293 0.62265 1.38850 1.40706 1.52049 1.74972 1.97438 2.01460 2.01596 2.27526 2.81771 2.84635 3.18233 3.41586 3.46506 3.86367 3.89051 3.93101 4.02743 4.10035 4.16960 4.27929 4.34627 4.37024 4.41002 4.44021 4.47588 4.55193 4.61252 4.71329 4.74188 4.83676 4.95848 4.97340 5.06345 5.13408 5.13704 5.24881 5.35897 5.38692 5.39953 5.83731 6.05096 6.20430 6.36855 6.56990 6.82968 6.98753 7.09616 7.52671 8.07527 8.68724 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011490 B = 0.001939 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.406103 B =14434.761600 C =16349.539271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.040 4.040 3 C -0.013 4.013 4 C -0.195 4.195 5 C -0.047 4.047 6 C 0.599 3.401 7 O -0.553 6.553 8 N -0.700 5.700 9 C 0.146 3.854 10 H 0.083 0.917 11 C -0.157 4.157 12 C -0.115 4.115 13 C 0.061 3.939 14 N -0.680 5.680 15 C 0.064 3.936 16 C 0.438 3.562 17 O -0.621 6.621 18 N -0.573 5.573 19 C -0.336 4.336 20 H 0.080 0.920 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.995 3.005 24 H -0.271 1.271 25 H -0.270 1.270 26 H -0.271 1.271 27 N -0.348 5.348 28 O 0.121 5.879 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.123 0.877 34 H 0.193 0.807 35 H 0.412 0.588 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.048 0.952 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.034 0.966 43 H 0.347 0.653 44 H 0.099 0.901 45 H 0.064 0.936 46 H 0.396 0.604 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.265 -26.970 10.004 30.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.078 4.078 3 C -0.076 4.076 4 C -0.218 4.218 5 C -0.205 4.205 6 C 0.383 3.617 7 O -0.430 6.430 8 N -0.352 5.352 9 C 0.042 3.958 10 H 0.101 0.899 11 C -0.215 4.215 12 C -0.153 4.153 13 C -0.068 4.068 14 N -0.312 5.312 15 C -0.069 4.069 16 C 0.225 3.775 17 O -0.508 6.508 18 N -0.210 5.210 19 C -0.465 4.465 20 H 0.098 0.902 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.819 3.181 24 H -0.197 1.197 25 H -0.194 1.194 26 H -0.196 1.196 27 N -0.049 5.049 28 O 0.045 5.955 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.109 0.891 32 H 0.127 0.873 33 H 0.141 0.859 34 H 0.210 0.790 35 H 0.248 0.752 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.067 0.933 39 H 0.114 0.886 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.052 0.948 43 H 0.166 0.834 44 H 0.117 0.883 45 H 0.082 0.918 46 H 0.230 0.770 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.127 -25.943 9.028 29.637 hybrid contribution -1.146 0.719 0.719 1.532 sum 9.980 -25.225 9.747 28.825 Atomic orbital electron populations 1.21833 0.93107 1.03956 1.02248 1.20433 0.96713 0.83658 1.07026 1.25225 1.00118 0.98126 0.84170 1.22669 1.05579 0.90937 1.02616 1.23585 1.07847 0.98484 0.90610 1.17035 0.76783 0.81732 0.86102 1.90773 1.55419 1.83253 1.13571 1.46047 1.65549 1.12371 1.11194 1.21086 0.96787 0.82730 0.95153 0.89925 1.22119 0.94202 1.02937 1.02260 1.21795 0.95295 0.97272 1.00926 1.22012 0.97203 0.92793 0.94753 1.60079 1.12511 1.07577 1.51052 1.21521 0.90963 0.95993 0.98382 1.20811 0.83012 0.88393 0.85283 1.90485 1.39936 1.59052 1.61322 1.41940 1.07141 1.25877 1.46028 1.19656 0.93922 1.04753 1.28196 0.90173 1.26090 0.94159 1.02068 0.99096 1.69671 0.99104 1.41075 1.46304 0.84958 0.77549 0.77432 0.78211 1.19656 1.19445 1.19584 1.74199 1.14787 1.00308 1.15571 1.84759 1.59455 1.16973 1.34312 0.92623 0.92957 0.89144 0.87306 0.85939 0.79004 0.75177 0.91500 0.89589 0.93284 0.88588 0.90010 0.91455 0.94784 0.83420 0.88316 0.91801 0.77028 0.91239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.89 71.98 0.71 -0.08 16 2 C -0.04 -0.18 6.50 29.85 0.19 0.02 16 3 C -0.01 -0.17 6.73 25.01 0.17 0.00 16 4 C -0.20 -3.22 10.92 22.60 0.25 -2.97 16 5 C -0.05 -1.03 7.19 42.96 0.31 -0.72 16 6 C 0.60 14.41 7.81 86.93 0.68 15.09 16 7 O -0.55 -15.98 16.61 -3.70 -0.06 -16.04 16 8 N -0.70 -14.21 4.53 -444.94 -2.01 -16.23 16 9 C 0.15 2.71 2.57 44.99 0.12 2.82 16 10 H 0.08 1.73 7.58 -2.39 -0.02 1.71 16 11 C -0.16 -2.51 9.48 71.98 0.68 -1.83 16 12 C -0.11 -2.14 5.01 30.59 0.15 -1.99 16 13 C 0.06 1.46 5.57 86.30 0.48 1.94 16 14 N -0.68 -21.62 6.13 -517.96 -3.17 -24.80 16 15 C 0.06 2.28 6.17 85.56 0.53 2.81 16 16 C 0.44 21.31 7.82 87.66 0.69 22.00 16 17 O -0.62 -34.90 15.78 -3.08 -0.05 -34.95 16 18 N -0.57 -30.05 5.29 -306.98 -1.62 -31.68 16 19 C -0.34 -19.36 9.68 84.04 0.81 -18.54 16 20 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 21 C -0.01 -0.78 5.50 84.92 0.47 -0.31 16 22 N -0.92 -50.34 13.05 21.66 0.28 -50.06 16 23 Si 1.00 43.30 29.55 68.60 2.03 45.33 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 N -0.35 -7.58 11.84 -49.51 -0.59 -8.17 16 28 O 0.12 2.18 11.18 71.83 0.80 2.98 16 29 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.11 0.18 8.14 -2.38 -0.02 0.16 16 33 H 0.12 0.05 8.14 -2.39 -0.02 0.03 16 34 H 0.19 2.51 8.06 -2.91 -0.02 2.49 16 35 H 0.41 7.87 8.36 -92.71 -0.78 7.10 16 36 H 0.07 0.98 8.14 -2.38 -0.02 0.97 16 37 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.07 1.64 7.75 -2.39 -0.02 1.62 16 42 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.35 11.30 8.43 -89.69 -0.76 10.54 16 44 H 0.10 3.27 8.14 -2.38 -0.02 3.25 16 45 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 46 H 0.40 19.78 7.90 -92.70 -0.73 19.05 16 47 H 0.28 14.24 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -74.13 405.52 0.60 -73.53 By element: Atomic # 1 Polarization: 43.09 SS G_CDS: -1.25 Total: 41.85 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: 6.24 Total: 18.22 kcal Atomic # 7 Polarization: -123.81 SS G_CDS: -7.11 Total: -130.93 kcal Atomic # 8 Polarization: -48.70 SS G_CDS: 0.69 Total: -48.01 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -74.13 0.60 -73.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497307840.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.767 kcal (2) G-P(sol) polarization free energy of solvation -74.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds