Wall clock time and date at job start Tue Mar 31 2020 22:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47265 * 2 1 4 4 O 1.34260 * 126.52637 * 269.97239 * 3 2 1 5 5 C 1.34052 * 108.22787 * 180.02562 * 4 3 2 6 6 N 1.29938 * 109.23819 * 0.02562 * 5 4 3 7 7 C 1.36059 * 108.48349 * 0.02562 * 6 5 4 8 8 C 1.47417 * 126.45137 * 180.02562 * 7 6 5 9 9 O 1.21613 * 120.00149 * 174.32694 * 8 7 6 10 10 N 1.34778 * 120.00017 * 354.32317 * 8 7 6 11 11 C 1.46497 * 119.99744 * 4.37661 * 10 8 7 12 12 C 1.53002 * 109.47658 * 83.65169 * 11 10 8 13 13 C 1.46501 * 120.00385 * 184.36984 * 10 8 7 14 14 C 1.53000 * 109.46884 * 90.00142 * 13 10 8 15 15 N 1.46903 * 109.46892 * 180.02562 * 14 13 10 16 16 C 1.46895 * 110.99829 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.47209 * 180.02562 * 16 15 14 18 18 O 1.21298 * 119.99537 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00318 * 180.02562 * 17 16 15 20 20 C 1.37104 * 120.00082 * 179.97438 * 19 17 16 21 21 H 1.07996 * 119.99503 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99888 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99809 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 119.99916 * 179.97438 * 22 20 19 25 25 H 1.48511 * 109.47108 * 60.00108 * 24 22 20 26 26 H 1.48495 * 109.47361 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47409 * 300.00508 * 24 22 20 28 28 H 1.08993 * 109.47456 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47025 * 300.00426 * 1 2 3 30 30 H 1.09008 * 109.46882 * 59.99659 * 1 2 3 31 31 H 1.09004 * 109.47120 * 240.00044 * 2 1 3 32 32 H 1.09000 * 109.47215 * 120.00307 * 2 1 3 33 33 H 1.07993 * 125.37896 * 179.97438 * 5 4 3 34 34 H 1.09006 * 109.47036 * 203.65593 * 11 10 8 35 35 H 1.09004 * 109.47027 * 323.65021 * 11 10 8 36 36 H 1.09000 * 109.46565 * 60.00059 * 12 11 10 37 37 H 1.09000 * 109.47120 * 180.02562 * 12 11 10 38 38 H 1.09000 * 109.46840 * 300.00189 * 12 11 10 39 39 H 1.08995 * 109.47425 * 210.00571 * 13 10 8 40 40 H 1.09004 * 109.46680 * 330.00639 * 13 10 8 41 41 H 1.09001 * 109.46909 * 299.99715 * 14 13 10 42 42 H 1.08998 * 109.47217 * 60.00291 * 14 13 10 43 43 H 1.00898 * 111.00141 * 56.04624 * 15 14 13 44 44 H 1.09005 * 109.47447 * 299.99579 * 16 15 14 45 45 H 1.09000 * 109.47377 * 59.99884 * 16 15 14 46 46 H 0.96999 * 119.99767 * 359.97438 * 19 17 16 47 47 H 0.96997 * 119.99616 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2992 2.1740 -1.0789 5 6 2.7239 3.3738 -0.6580 6 7 2.7312 3.3938 0.6412 7 6 2.3038 2.1839 1.0937 8 6 2.1598 1.7769 2.5032 9 8 1.6686 0.6988 2.7777 10 7 2.5726 2.5997 3.4877 11 6 3.0755 3.9366 3.1623 12 6 1.8979 4.9014 3.0098 13 6 2.5182 2.1571 4.8832 14 6 3.8354 1.4720 5.2526 15 7 3.7807 1.0277 6.6518 16 6 5.0316 0.3643 7.0427 17 6 4.9381 -0.0771 8.4806 18 8 3.9286 0.1401 9.1171 19 7 5.9763 -0.7122 9.0595 20 6 5.8913 -1.1133 10.3678 21 1 4.9922 -0.9207 10.9343 22 6 6.9615 -1.7686 10.9645 23 7 8.0553 -2.0034 10.2749 24 14 6.8460 -2.3145 12.7471 25 1 5.7133 -3.2624 12.9022 26 1 8.1102 -2.9858 13.1422 27 1 6.6222 -1.1298 13.6141 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.0147 4.1938 -1.2977 34 1 3.7286 4.2839 3.9630 35 1 3.6358 3.8966 2.2281 36 1 1.3378 4.9414 3.9440 37 1 2.2722 5.8960 2.7672 38 1 1.2450 4.5541 2.2091 39 1 2.3625 3.0190 5.5319 40 1 1.6950 1.4539 5.0095 41 1 3.9910 0.6100 4.6039 42 1 4.6586 2.1752 5.1263 43 1 2.9869 0.4250 6.8090 44 1 5.1962 -0.5051 6.4062 45 1 5.8629 1.0603 6.9293 46 1 6.7836 -0.8855 8.5505 47 1 8.8022 -2.4612 10.6913 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497368586.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:08 Heat of formation + Delta-G solvation = -39.885685 kcal Electronic energy + Delta-G solvation = -28916.735588 eV Core-core repulsion = 24715.814891 eV Total energy + Delta-G solvation = -4200.920697 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.87038 -40.01487 -38.24520 -36.65823 -35.60391 -34.83864 -34.45032 -33.79111 -31.31940 -31.04950 -29.91920 -28.81609 -26.30730 -24.89484 -24.07788 -23.84240 -23.23403 -22.37911 -21.44945 -19.80267 -19.16776 -17.91318 -17.78070 -17.20275 -16.84410 -16.44513 -16.12915 -15.50754 -15.42901 -15.15835 -14.85100 -14.50002 -14.29251 -14.16644 -13.86993 -13.85263 -13.62355 -13.39071 -13.16730 -12.97256 -12.66048 -12.30302 -12.15530 -12.09599 -11.95550 -11.87825 -11.59167 -11.48615 -11.45673 -11.25554 -11.06609 -10.92810 -10.62790 -10.41793 -10.18942 -10.14526 -9.46864 -9.37275 -8.83532 -8.41442 -8.03943 -7.92725 -6.38549 -3.79302 0.73410 1.66182 2.14706 2.70927 3.02033 3.22733 3.27971 3.32732 3.60225 3.94615 4.14045 4.17017 4.28473 4.49167 4.65358 4.80508 4.87467 4.91791 5.02493 5.10295 5.14236 5.21544 5.27382 5.31406 5.35780 5.38035 5.47974 5.49651 5.55319 5.65816 5.71014 5.79316 5.83464 5.89400 5.90697 5.97502 6.02986 6.18397 6.28815 6.41887 6.99614 7.21487 7.22349 7.58102 7.68306 7.92023 8.09428 8.64705 9.20900 9.57637 10.09296 10.79226 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020489 B = 0.001882 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.249271 B =14876.715870 C =15371.074936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.047 4.047 3 C 0.048 3.952 4 O -0.199 6.199 5 C 0.169 3.831 6 N -0.455 5.455 7 C -0.072 4.072 8 C 0.599 3.401 9 O -0.531 6.531 10 N -0.593 5.593 11 C 0.096 3.904 12 C -0.155 4.155 13 C 0.117 3.883 14 C 0.047 3.953 15 N -0.666 5.666 16 C 0.053 3.947 17 C 0.442 3.558 18 O -0.583 6.583 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.932 3.068 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.273 1.273 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.116 0.884 33 H 0.254 0.746 34 H 0.075 0.925 35 H 0.110 0.890 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.029 0.971 42 H 0.071 0.929 43 H 0.351 0.649 44 H 0.043 0.957 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.718 11.116 -27.232 30.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.084 4.084 3 C -0.009 4.009 4 O -0.085 6.085 5 C -0.059 4.059 6 N -0.185 5.185 7 C -0.192 4.192 8 C 0.386 3.614 9 O -0.408 6.408 10 N -0.325 5.325 11 C -0.027 4.027 12 C -0.213 4.213 13 C -0.006 4.006 14 C -0.084 4.084 15 N -0.299 5.299 16 C -0.080 4.080 17 C 0.227 3.773 18 O -0.467 6.467 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.759 3.241 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.134 0.866 33 H 0.269 0.731 34 H 0.093 0.907 35 H 0.128 0.872 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.109 0.891 40 H 0.104 0.896 41 H 0.048 0.952 42 H 0.089 0.911 43 H 0.170 0.830 44 H 0.061 0.939 45 H 0.104 0.896 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.106 11.722 -25.957 30.221 hybrid contribution 0.530 -1.386 -0.442 1.548 sum -9.576 10.336 -26.399 29.924 Atomic orbital electron populations 1.21698 0.92890 1.03074 1.02430 1.20389 0.97260 0.85324 1.05424 1.23833 0.98152 0.95609 0.83290 1.84381 1.63597 1.24198 1.36326 1.28161 0.99118 0.87031 0.91606 1.70935 1.17223 1.20880 1.09414 1.21454 1.10648 0.91542 0.95515 1.16794 0.78124 0.83793 0.82672 1.90806 1.44867 1.22188 1.82973 1.47746 1.62810 1.15605 1.06321 1.22016 0.96818 0.80544 1.03302 1.22017 0.98753 0.99077 1.01437 1.21466 0.98298 1.00903 0.79902 1.22257 0.97924 0.98907 0.89281 1.60000 1.05050 1.46310 1.18556 1.21653 0.93138 0.97504 0.95720 1.19797 0.85277 0.83917 0.88307 1.90522 1.31343 1.59906 1.64912 1.41855 1.15064 1.50740 1.12420 1.19662 1.02100 1.33812 0.87281 0.87956 1.25269 0.95003 0.97415 1.00329 1.69610 1.04952 1.42288 1.37559 0.85906 0.77359 0.78926 0.81950 1.19919 1.21011 1.19880 0.90931 0.91631 0.92701 0.89700 0.86573 0.73083 0.90674 0.87247 0.93114 0.91745 0.92679 0.89129 0.89554 0.95242 0.91068 0.82968 0.93852 0.89623 0.77457 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.89 37.16 0.37 -0.68 16 2 C -0.05 -0.37 5.88 -27.88 -0.16 -0.54 16 3 C 0.05 0.44 6.69 -35.08 -0.23 0.21 16 4 O -0.20 -1.52 10.73 6.50 0.07 -1.45 16 5 C 0.17 0.98 13.19 51.96 0.69 1.67 16 6 N -0.46 -3.94 6.68 -11.49 -0.08 -4.02 16 7 C -0.07 -0.77 6.49 -83.03 -0.54 -1.31 16 8 C 0.60 7.59 7.61 -12.52 -0.10 7.50 16 9 O -0.53 -7.85 14.43 5.27 0.08 -7.77 16 10 N -0.59 -6.84 2.49 -174.95 -0.44 -7.27 16 11 C 0.10 0.89 5.70 -4.04 -0.02 0.87 16 12 C -0.15 -1.31 9.74 37.16 0.36 -0.95 16 13 C 0.12 1.45 5.67 -4.04 -0.02 1.42 16 14 C 0.05 0.65 6.01 -3.82 -0.02 0.62 16 15 N -0.67 -11.37 6.13 -115.06 -0.70 -12.08 16 16 C 0.05 0.98 6.17 -4.98 -0.03 0.95 16 17 C 0.44 10.76 7.82 -10.99 -0.09 10.68 16 18 O -0.58 -16.22 15.78 5.54 0.09 -16.14 16 19 N -0.56 -14.67 5.29 -10.96 -0.06 -14.73 16 20 C -0.30 -8.50 9.68 -14.93 -0.14 -8.65 16 21 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 22 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 23 N -0.90 -24.94 13.05 55.50 0.72 -24.22 16 24 Si 0.93 21.38 29.55 -169.99 -5.02 16.36 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.12 1.11 6.61 -51.93 -0.34 0.76 16 33 H 0.25 0.15 8.06 -52.49 -0.42 -0.28 16 34 H 0.07 0.65 8.02 -51.93 -0.42 0.23 16 35 H 0.11 1.03 5.25 -51.93 -0.27 0.76 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.05 0.53 7.12 -51.93 -0.37 0.16 16 39 H 0.09 1.06 8.07 -51.93 -0.42 0.64 16 40 H 0.09 1.17 7.36 -51.93 -0.38 0.78 16 41 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.35 6.24 8.43 -39.29 -0.33 5.90 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 46 H 0.39 9.74 7.90 -40.82 -0.32 9.42 16 47 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 395.21 15.07 5.96 5.96 Total: -1.00 -34.31 395.21 -6.45 -40.76 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -7.02 Total: 12.32 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: -0.04 Total: 12.27 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: -0.55 Total: -62.31 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: 0.23 Total: -25.36 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.31 -6.45 -40.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497368586.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.875 kcal (2) G-P(sol) polarization free energy of solvation -34.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds