Wall clock time and date at job start Tue Mar 31 2020 21:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29940 * 126.28932 * 2 1 4 4 O 1.21306 * 110.24924 * 179.68466 * 3 2 1 5 5 C 1.33647 * 109.81048 * 0.46232 * 4 3 2 6 6 C 1.50695 * 126.54767 * 179.80074 * 5 4 3 7 7 C 1.53000 * 109.47482 * 269.69383 * 6 5 4 8 8 C 1.52996 * 109.47276 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.46991 * 180.02562 * 8 7 6 10 10 O 1.21274 * 120.00072 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99816 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00072 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47282 * 179.97438 * 12 11 9 14 14 O 1.42901 * 110.64338 * 298.31527 * 13 12 11 15 15 C 1.55154 * 110.71880 * 174.97661 * 13 12 11 16 16 C 1.54910 * 101.58031 * 206.13651 * 15 13 12 17 17 N 1.47426 * 104.83209 * 37.01037 * 16 15 13 18 18 C 1.36937 * 125.64487 * 155.84912 * 17 16 15 19 19 H 1.08001 * 119.99600 * 180.02562 * 18 17 16 20 20 C 1.38807 * 120.00345 * 0.02772 * 18 17 16 21 21 N 1.31623 * 120.00215 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99940 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47242 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47053 * 119.99981 * 22 20 18 25 25 H 1.48510 * 109.46679 * 239.99739 * 22 20 18 26 26 C 1.47019 * 108.70209 * 335.87354 * 17 16 15 27 27 N 1.31120 * 106.89628 * 359.54407 * 5 4 3 28 28 H 1.08996 * 109.47613 * 270.02931 * 1 2 3 29 29 H 1.09000 * 109.47042 * 30.02682 * 1 2 3 30 30 H 1.09003 * 109.47380 * 150.02201 * 1 2 3 31 31 H 1.08998 * 109.46975 * 149.68972 * 6 5 4 32 32 H 1.09002 * 109.47471 * 29.69267 * 6 5 4 33 33 H 1.08998 * 109.47352 * 59.99819 * 7 6 5 34 34 H 1.09002 * 109.46673 * 300.00373 * 7 6 5 35 35 H 1.08998 * 109.47576 * 59.99347 * 8 7 6 36 36 H 1.09002 * 109.47076 * 299.99516 * 8 7 6 37 37 H 0.97006 * 120.00120 * 359.97438 * 11 9 8 38 38 H 1.09000 * 109.46837 * 59.99936 * 12 11 9 39 39 H 1.09000 * 109.47332 * 300.00307 * 12 11 9 40 40 H 0.96694 * 114.00195 * 61.68414 * 14 13 12 41 41 H 1.09002 * 111.00945 * 88.06458 * 15 13 12 42 42 H 1.08999 * 111.00353 * 324.20996 * 15 13 12 43 43 H 1.08998 * 110.36709 * 278.17139 * 16 15 13 44 44 H 1.09005 * 110.36466 * 155.84673 * 16 15 13 45 45 H 0.96993 * 120.00387 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.88389 * 120.48020 * 26 17 16 47 47 H 1.09004 * 109.87600 * 241.48978 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7122 0.0063 5 6 3.5298 -0.6214 0.0009 6 6 4.7968 -1.4372 0.0014 7 6 5.2262 -1.7136 -1.4409 8 6 6.5122 -2.5424 -1.4402 9 6 6.9354 -2.8141 -2.8609 10 8 6.2733 -2.3874 -3.7830 11 7 8.0496 -3.5315 -3.1066 12 6 8.4607 -3.7961 -4.4876 13 6 9.7476 -4.6237 -4.4870 14 8 10.8079 -3.9059 -3.8527 15 6 10.1408 -5.0281 -5.9323 16 6 10.9539 -6.3228 -5.6827 17 7 10.2613 -6.9943 -4.5679 18 6 10.3009 -8.3359 -4.2961 19 1 9.7561 -8.7321 -3.4520 20 6 11.0414 -9.1865 -5.1054 21 7 11.7050 -8.7037 -6.1345 22 14 11.0948 -11.0166 -4.7349 23 1 10.2702 -11.3028 -3.5335 24 1 10.5587 -11.7724 -5.8953 25 1 12.4986 -11.4295 -4.4811 26 6 9.5206 -5.9853 -3.7968 27 7 2.3030 -1.0842 0.0006 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8897 -0.5143 30 1 -0.3634 -0.8902 -0.5135 31 1 4.6204 -2.3820 0.5155 32 1 5.5840 -0.8855 0.5153 33 1 5.4026 -0.7688 -1.9549 34 1 4.4390 -2.2653 -1.9548 35 1 6.3354 -3.4872 -0.9263 36 1 7.2995 -1.9910 -0.9262 37 1 8.5794 -3.8725 -2.3690 38 1 8.6371 -2.8512 -5.0015 39 1 7.6737 -4.3479 -5.0016 40 1 10.6407 -3.6968 -2.9235 41 1 10.7603 -4.2614 -6.3977 42 1 9.2561 -5.2324 -6.5353 43 1 11.9783 -6.0791 -5.4012 44 1 10.9437 -6.9543 -6.5712 45 1 12.2221 -9.2981 -6.7002 46 1 8.4578 -6.2272 -3.7944 47 1 9.8955 -5.9519 -2.7738 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500758501.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:55 Heat of formation + Delta-G solvation = -1.355258 kcal Electronic energy + Delta-G solvation = -28473.725649 eV Core-core repulsion = 24274.475757 eV Total energy + Delta-G solvation = -4199.249892 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.94058 -40.05760 -38.57401 -36.57379 -35.79272 -35.17267 -34.20768 -32.91482 -32.12738 -29.98927 -29.59129 -28.95992 -27.80863 -25.74770 -24.30808 -23.69070 -22.77961 -21.49367 -20.78443 -20.05311 -19.91994 -18.45787 -17.98407 -17.48474 -16.99539 -16.39056 -16.21128 -15.82893 -15.25616 -14.97304 -14.77759 -14.40325 -14.12059 -14.02393 -13.96319 -13.73051 -13.43186 -13.30900 -12.99873 -12.92157 -12.76860 -12.45749 -12.17239 -12.08887 -12.04928 -11.66184 -11.62544 -11.40188 -11.21925 -11.06761 -10.92217 -10.79552 -10.41370 -10.25057 -10.17012 -10.14693 -9.83026 -9.75531 -9.44359 -9.13113 -8.69401 -6.90028 -5.70262 -3.12881 0.76801 1.84157 2.40136 2.53757 3.04701 3.27031 3.36522 3.41591 3.44439 3.66189 4.29271 4.36798 4.42939 4.43208 4.47138 4.67370 4.80761 4.87917 4.93545 4.96031 5.03781 5.06470 5.14900 5.18702 5.27919 5.36746 5.45913 5.49641 5.57043 5.59978 5.68020 5.82290 5.84587 5.94945 6.19659 6.28655 6.36184 6.45878 6.55816 6.59086 7.35607 7.52313 7.57118 7.80283 7.80288 7.88880 8.11206 8.30325 9.16102 9.76621 10.40619 11.33469 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021017 B = 0.001732 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.944996 B =16158.340143 C =16908.401954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.167 3.833 3 N -0.388 5.388 4 O 0.076 5.924 5 C 0.189 3.811 6 C -0.029 4.029 7 C -0.102 4.102 8 C -0.140 4.140 9 C 0.512 3.488 10 O -0.542 6.542 11 N -0.727 5.727 12 C 0.104 3.896 13 C 0.105 3.895 14 O -0.543 6.543 15 C -0.128 4.128 16 C 0.155 3.845 17 N -0.600 5.600 18 C -0.226 4.226 19 H 0.078 0.922 20 C -0.010 4.010 21 N -0.919 5.919 22 Si 0.915 3.085 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.117 3.883 27 N -0.482 5.482 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.399 0.601 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.364 0.636 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.018 0.982 44 H 0.108 0.892 45 H 0.253 0.747 46 H 0.030 0.970 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.574 17.004 13.630 26.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.105 4.105 3 N -0.097 5.097 4 O 0.019 5.981 5 C -0.031 4.031 6 C -0.068 4.068 7 C -0.141 4.141 8 C -0.180 4.180 9 C 0.298 3.702 10 O -0.419 6.419 11 N -0.379 5.379 12 C -0.020 4.020 13 C 0.064 3.936 14 O -0.347 6.347 15 C -0.167 4.167 16 C 0.031 3.969 17 N -0.326 5.326 18 C -0.354 4.354 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.568 5.568 22 Si 0.746 3.254 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.217 1.217 26 C -0.010 4.010 27 N -0.216 5.216 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.131 0.869 32 H 0.124 0.876 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.233 0.767 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.210 0.790 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.036 0.964 44 H 0.126 0.874 45 H 0.063 0.937 46 H 0.048 0.952 47 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -15.333 17.559 12.272 26.345 hybrid contribution 0.244 -1.108 1.191 1.645 sum -15.089 16.451 13.463 26.069 Atomic orbital electron populations 1.20149 0.82920 1.04800 1.04291 1.25937 1.00676 0.83507 1.00411 1.74644 0.89416 1.23955 1.21689 1.85294 1.22356 1.24840 1.65652 1.28801 0.97055 0.82175 0.95099 1.20336 0.87986 0.98404 1.00072 1.21326 0.97331 1.01814 0.93660 1.21629 0.98933 1.02699 0.94736 1.20561 0.80347 0.77809 0.91460 1.90725 1.53435 1.51166 1.46548 1.46013 1.27235 1.55294 1.09357 1.22074 0.96829 1.00476 0.82577 1.22564 0.84644 0.89965 0.96467 1.86632 1.43499 1.76992 1.27613 1.23051 1.01453 1.00546 0.91673 1.21948 0.92035 0.88766 0.94165 1.44422 1.55673 1.02536 1.29968 1.19099 1.25260 0.81152 1.09905 0.90456 1.24806 0.99509 0.98406 0.97835 1.69799 1.35501 1.33089 1.18384 0.85988 0.77323 0.84675 0.77415 1.20540 1.21671 1.21700 1.21920 0.95922 0.88626 0.94522 1.71919 0.99781 1.29401 1.20521 0.89309 0.89481 0.88923 0.86854 0.87615 0.90202 0.89989 0.88115 0.88212 0.76668 0.90789 0.90341 0.79011 0.91068 0.90580 0.96356 0.87415 0.93662 0.95206 0.95968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.38 10.51 36.00 0.38 0.00 16 2 C 0.17 1.65 8.22 -156.37 -1.28 0.36 16 3 N -0.39 -4.25 12.16 30.90 0.38 -3.88 16 4 O 0.08 0.75 11.31 18.09 0.20 0.96 16 5 C 0.19 1.61 7.77 -13.06 -0.10 1.51 16 6 C -0.03 -0.14 5.84 -27.89 -0.16 -0.30 16 7 C -0.10 -0.70 4.49 -26.73 -0.12 -0.82 16 8 C -0.14 -0.83 5.70 -27.88 -0.16 -0.99 16 9 C 0.51 5.59 7.83 -10.98 -0.09 5.50 16 10 O -0.54 -8.31 15.98 5.56 0.09 -8.22 16 11 N -0.73 -7.73 5.17 -60.30 -0.31 -8.05 16 12 C 0.10 1.44 4.73 -4.04 -0.02 1.42 16 13 C 0.11 1.71 0.92 -88.79 -0.08 1.63 16 14 O -0.54 -8.51 13.10 -35.23 -0.46 -8.97 16 15 C -0.13 -2.40 6.26 -24.58 -0.15 -2.55 16 16 C 0.16 3.75 5.88 -2.53 -0.01 3.73 16 17 N -0.60 -14.94 3.39 -170.07 -0.58 -15.51 16 18 C -0.23 -6.16 10.27 -15.06 -0.15 -6.32 16 19 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 20 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 21 N -0.92 -26.47 10.09 55.49 0.56 -25.91 16 22 Si 0.92 21.70 29.55 -169.99 -5.02 16.68 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 C 0.12 2.24 6.02 -3.07 -0.02 2.22 16 27 N -0.48 -4.97 11.55 -9.87 -0.11 -5.08 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 34 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 35 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.40 3.25 7.38 -40.82 -0.30 2.95 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.08 1.19 8.13 -51.93 -0.42 0.76 16 40 H 0.36 4.03 8.12 45.56 0.37 4.40 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.08 1.36 8.04 -51.93 -0.42 0.94 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.11 2.90 5.87 -51.93 -0.30 2.60 16 45 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 46 H 0.03 0.57 7.82 -51.93 -0.41 0.17 16 47 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 LS Contribution 390.73 15.07 5.89 5.89 Total: -1.00 -36.28 390.73 -7.96 -44.24 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -6.52 Total: 2.81 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -2.07 Total: 5.04 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -0.07 Total: -58.43 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.17 Total: -16.23 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.28 -7.96 -44.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500758501.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.881 kcal (2) G-P(sol) polarization free energy of solvation -36.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds