Wall clock time and date at job start Tue Mar 31 2020 21:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29944 * 126.28981 * 2 1 4 4 O 1.21304 * 110.25217 * 179.68886 * 3 2 1 5 5 C 1.33638 * 109.80758 * 0.46725 * 4 3 2 6 6 C 1.50703 * 126.54787 * 179.80037 * 5 4 3 7 7 C 1.53001 * 109.47276 * 269.69165 * 6 5 4 8 8 C 1.52996 * 109.47440 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47396 * 180.02562 * 8 7 6 10 10 O 1.21282 * 120.00027 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00067 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00095 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.47296 * 179.97438 * 12 11 9 14 14 H 1.09002 * 109.67356 * 300.08344 * 13 12 11 15 15 C 1.53293 * 109.68225 * 179.52720 * 13 12 11 16 16 O 1.42963 * 109.22206 * 187.97233 * 15 13 12 17 17 C 1.42960 * 114.16421 * 62.58305 * 16 15 13 18 18 C 1.53296 * 109.22135 * 297.41637 * 17 16 15 19 19 N 1.47149 * 108.38791 * 52.30491 * 18 17 16 20 20 C 1.36940 * 120.98609 * 129.48196 * 19 18 17 21 21 H 1.08001 * 120.00242 * 211.18142 * 20 19 18 22 22 C 1.38813 * 119.99633 * 31.18631 * 20 19 18 23 23 N 1.31615 * 119.99822 * 10.72942 * 22 20 19 24 24 Si 1.86796 * 119.99785 * 190.73332 * 22 20 19 25 25 H 1.48500 * 109.47315 * 90.00141 * 24 22 20 26 26 H 1.48505 * 109.47094 * 209.99997 * 24 22 20 27 27 H 1.48501 * 109.47297 * 329.99840 * 24 22 20 28 28 N 1.31126 * 106.90027 * 359.54383 * 5 4 3 29 29 H 1.09007 * 109.46818 * 270.02009 * 1 2 3 30 30 H 1.09002 * 109.47694 * 30.01751 * 1 2 3 31 31 H 1.08996 * 109.47224 * 150.02156 * 1 2 3 32 32 H 1.09006 * 109.47173 * 149.69396 * 6 5 4 33 33 H 1.09004 * 109.47470 * 29.69121 * 6 5 4 34 34 H 1.09006 * 109.46831 * 60.00021 * 7 6 5 35 35 H 1.09005 * 109.47355 * 300.00407 * 7 6 5 36 36 H 1.08999 * 109.47294 * 59.99723 * 8 7 6 37 37 H 1.09005 * 109.47078 * 300.00453 * 8 7 6 38 38 H 0.97000 * 120.00174 * 359.97438 * 11 9 8 39 39 H 1.09000 * 109.46715 * 299.99388 * 12 11 9 40 40 H 1.09001 * 109.47133 * 60.00040 * 12 11 9 41 41 H 1.09000 * 109.50986 * 307.89855 * 15 13 12 42 42 H 1.09000 * 109.50938 * 68.05053 * 15 13 12 43 43 H 1.08997 * 109.50984 * 177.49429 * 17 16 15 44 44 H 1.09000 * 109.56112 * 57.36622 * 17 16 15 45 45 H 1.09004 * 109.68510 * 292.57842 * 18 17 16 46 46 H 1.09004 * 109.68199 * 172.03098 * 18 17 16 47 47 H 0.97006 * 119.99751 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2760 1.0474 0.0000 4 8 3.4419 0.7123 0.0062 5 6 3.5298 -0.6212 0.0006 6 6 4.7969 -1.4370 0.0010 7 6 5.2261 -1.7134 -1.4413 8 6 6.5121 -2.5422 -1.4410 9 6 6.9351 -2.8138 -2.8616 10 8 6.2730 -2.3869 -3.7837 11 7 8.0488 -3.5319 -3.1075 12 6 8.4598 -3.7964 -4.4886 13 6 9.7459 -4.6252 -4.4882 14 1 10.5353 -4.0774 -3.9735 15 6 10.1739 -4.9148 -5.9314 16 8 11.2640 -5.8398 -5.9224 17 6 10.9438 -7.1161 -5.3635 18 6 10.5553 -6.9392 -3.8912 19 7 9.5085 -5.9083 -3.8080 20 6 8.3479 -6.1361 -3.1179 21 1 7.4287 -5.6676 -3.4374 22 6 8.3528 -6.9692 -2.0075 23 7 9.4950 -7.3704 -1.4910 24 14 6.7385 -7.5208 -1.2467 25 1 6.2973 -8.7869 -1.8852 26 1 6.9273 -7.7406 0.2098 27 1 5.7074 -6.4735 -1.4596 28 7 2.3029 -1.0841 0.0003 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3633 -0.8901 -0.5135 32 1 4.6204 -2.3820 0.5149 33 1 5.5841 -0.8854 0.5150 34 1 5.4025 -0.7684 -1.9552 35 1 4.4389 -2.2650 -1.9554 36 1 6.3353 -3.4870 -0.9272 37 1 7.2995 -1.9909 -0.9268 38 1 8.5782 -3.8737 -2.3701 39 1 7.6723 -4.3475 -5.0027 40 1 8.6370 -2.8515 -5.0023 41 1 9.3361 -5.3447 -6.4803 42 1 10.4872 -3.9876 -6.4112 43 1 11.8110 -7.7726 -5.4348 44 1 10.1091 -7.5549 -5.9101 45 1 11.4266 -6.6247 -3.3167 46 1 10.1750 -7.8812 -3.4961 47 1 9.4984 -7.9529 -0.7153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501845493.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:45 Heat of formation + Delta-G solvation = 2.594029 kcal Electronic energy + Delta-G solvation = -29528.093880 eV Core-core repulsion = 25329.015242 eV Total energy + Delta-G solvation = -4199.078638 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.73887 -39.42960 -38.38184 -36.36315 -35.66993 -35.15767 -33.59286 -32.62884 -31.58009 -30.49576 -29.52442 -28.43705 -27.21363 -25.47046 -23.87880 -23.49581 -22.77022 -21.65050 -21.17727 -19.88646 -19.54597 -18.24641 -17.64045 -17.07694 -16.26519 -16.06016 -15.81782 -15.56288 -15.19591 -14.72162 -14.63913 -14.37819 -14.12895 -13.90172 -13.85896 -13.67823 -13.36538 -13.14520 -13.01226 -12.78678 -12.64326 -12.34765 -12.12948 -11.76613 -11.63363 -11.53608 -11.43159 -11.18666 -11.08619 -10.94277 -10.81991 -10.77873 -10.44731 -10.28361 -10.09414 -10.03206 -9.70701 -9.45035 -8.99725 -8.71950 -8.29571 -6.78001 -5.95430 -3.45690 0.96899 2.04004 2.62707 3.14631 3.23844 3.32790 3.34510 3.43986 3.76125 3.86134 4.29354 4.50075 4.63306 4.78784 4.80529 5.04844 5.07661 5.10689 5.15573 5.21883 5.25735 5.41357 5.44747 5.49868 5.57212 5.66065 5.69166 5.75218 5.81807 5.84516 5.99374 6.04043 6.08026 6.12806 6.19555 6.20914 6.29959 6.49143 6.72518 7.03462 7.08574 7.44892 7.65488 7.83404 7.99719 8.18266 8.24792 8.80080 9.00701 9.61079 10.20573 11.10847 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015943 B = 0.002534 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.857591 B =11048.175115 C =12235.570709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.166 3.834 3 N -0.391 5.391 4 O 0.075 5.925 5 C 0.195 3.805 6 C -0.032 4.032 7 C -0.099 4.099 8 C -0.140 4.140 9 C 0.508 3.492 10 O -0.566 6.566 11 N -0.694 5.694 12 C 0.136 3.864 13 C 0.125 3.875 14 H 0.041 0.959 15 C 0.056 3.944 16 O -0.393 6.393 17 C 0.035 3.965 18 C 0.144 3.856 19 N -0.591 5.591 20 C -0.256 4.256 21 H 0.074 0.926 22 C 0.009 3.991 23 N -0.900 5.900 24 Si 0.896 3.104 25 H -0.287 1.287 26 H -0.289 1.289 27 H -0.276 1.276 28 N -0.484 5.484 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.416 0.584 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.040 0.960 45 H 0.029 0.971 46 H 0.092 0.908 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.830 10.191 2.772 12.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 N -0.100 5.100 4 O 0.017 5.983 5 C -0.026 4.026 6 C -0.071 4.071 7 C -0.138 4.138 8 C -0.180 4.180 9 C 0.294 3.706 10 O -0.446 6.446 11 N -0.346 5.346 12 C 0.011 3.989 13 C 0.018 3.982 14 H 0.059 0.941 15 C -0.023 4.023 16 O -0.311 6.311 17 C -0.043 4.043 18 C 0.018 3.982 19 N -0.317 5.317 20 C -0.385 4.385 21 H 0.092 0.908 22 C -0.190 4.190 23 N -0.543 5.543 24 Si 0.725 3.275 25 H -0.213 1.213 26 H -0.215 1.215 27 H -0.201 1.201 28 N -0.218 5.218 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.132 0.868 33 H 0.124 0.876 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.254 0.746 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.059 0.941 45 H 0.048 0.952 46 H 0.110 0.890 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.717 10.927 2.215 13.560 hybrid contribution -0.649 -0.844 0.972 1.442 sum -8.366 10.084 3.187 13.484 Atomic orbital electron populations 1.20129 0.83037 1.04693 1.04187 1.25921 1.00625 0.83616 1.00494 1.74621 0.89466 1.24002 1.21943 1.85284 1.22295 1.24934 1.65741 1.28879 0.97109 0.82025 0.94567 1.20405 0.87786 0.98340 1.00526 1.21301 0.97712 1.01640 0.93124 1.21588 0.98259 1.02517 0.95642 1.20406 0.80923 0.78274 0.90993 1.90651 1.54249 1.53218 1.46498 1.46022 1.26494 1.52351 1.09686 1.21145 0.96609 0.97710 0.83398 1.21431 0.94581 0.88925 0.93275 0.94109 1.22869 0.89977 0.92733 0.96764 1.87802 1.36303 1.24343 1.82684 1.23351 0.99401 0.84181 0.97394 1.21418 0.91361 0.95070 0.90325 1.44088 1.18516 1.08669 1.60407 1.19257 0.86647 1.27501 1.05097 0.90821 1.25153 0.96396 1.01205 0.96285 1.69981 1.23747 1.37064 1.23540 0.86399 0.83396 0.79280 0.78415 1.21348 1.21530 1.20120 1.71937 0.99818 1.29316 1.20695 0.89399 0.89568 0.88983 0.86843 0.87626 0.90428 0.90191 0.88219 0.88657 0.74625 0.91608 0.92412 0.93524 0.89927 0.90251 0.94134 0.95247 0.88975 0.93421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.49 10.51 36.00 0.38 -0.11 16 2 C 0.17 2.02 8.22 -156.38 -1.28 0.73 16 3 N -0.39 -5.13 12.16 30.90 0.38 -4.76 16 4 O 0.07 0.93 11.31 18.11 0.20 1.13 16 5 C 0.19 2.26 7.77 -13.06 -0.10 2.16 16 6 C -0.03 -0.28 5.84 -27.88 -0.16 -0.44 16 7 C -0.10 -1.13 4.49 -26.73 -0.12 -1.25 16 8 C -0.14 -1.71 5.70 -27.89 -0.16 -1.86 16 9 C 0.51 8.49 7.83 -10.99 -0.09 8.40 16 10 O -0.57 -11.20 15.98 5.56 0.09 -11.12 16 11 N -0.69 -12.03 3.77 -60.29 -0.23 -12.26 16 12 C 0.14 2.40 4.45 -4.04 -0.02 2.38 16 13 C 0.12 2.34 3.21 -67.42 -0.22 2.13 16 14 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 15 C 0.06 0.96 6.29 37.31 0.23 1.19 16 16 O -0.39 -7.48 10.74 -35.23 -0.38 -7.86 16 17 C 0.03 0.65 6.98 37.31 0.26 0.91 16 18 C 0.14 3.17 5.38 -3.53 -0.02 3.15 16 19 N -0.59 -13.06 3.03 -164.30 -0.50 -13.56 16 20 C -0.26 -6.03 7.06 -15.06 -0.11 -6.14 16 21 H 0.07 1.77 5.81 -52.49 -0.30 1.47 16 22 C 0.01 0.23 5.06 -17.43 -0.09 0.14 16 23 N -0.90 -23.28 11.13 55.49 0.62 -22.67 16 24 Si 0.90 19.78 29.57 -169.99 -5.03 14.75 16 25 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 28 N -0.48 -6.36 11.55 -9.87 -0.11 -6.47 16 29 H 0.09 0.55 8.14 -51.92 -0.42 0.13 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 35 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 36 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.42 7.45 7.31 -40.82 -0.30 7.15 16 39 H 0.07 1.28 7.57 -51.93 -0.39 0.89 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 44 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.09 2.24 6.33 -51.93 -0.33 1.91 16 47 H 0.26 6.51 8.31 -40.82 -0.34 6.17 16 LS Contribution 384.85 15.07 5.80 5.80 Total: -1.00 -30.74 384.85 -7.87 -38.60 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -7.22 Total: 7.02 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: -1.49 Total: 11.38 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: 0.15 Total: -59.71 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.08 Total: -17.84 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.75 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.74 -7.87 -38.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501845493.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.196 kcal (2) G-P(sol) polarization free energy of solvation -30.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds