Wall clock time and date at job start Tue Mar 31 2020 21:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29944 * 126.28981 * 2 1 4 4 O 1.21304 * 110.25217 * 179.68886 * 3 2 1 5 5 C 1.33638 * 109.80758 * 0.46725 * 4 3 2 6 6 C 1.50703 * 126.54787 * 179.80037 * 5 4 3 7 7 C 1.53001 * 109.47276 * 269.69165 * 6 5 4 8 8 C 1.52996 * 109.47440 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47396 * 180.02562 * 8 7 6 10 10 O 1.21282 * 120.00027 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00067 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00095 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.47296 * 179.97438 * 12 11 9 14 14 H 1.09002 * 109.67356 * 300.08344 * 13 12 11 15 15 C 1.53293 * 109.68225 * 179.52720 * 13 12 11 16 16 O 1.42963 * 109.22206 * 187.97233 * 15 13 12 17 17 C 1.42960 * 114.16421 * 62.58305 * 16 15 13 18 18 C 1.53296 * 109.22135 * 297.41637 * 17 16 15 19 19 N 1.47149 * 108.38791 * 52.30491 * 18 17 16 20 20 C 1.36940 * 120.98609 * 129.48196 * 19 18 17 21 21 H 1.08001 * 120.00242 * 211.18142 * 20 19 18 22 22 C 1.38813 * 119.99633 * 31.18631 * 20 19 18 23 23 N 1.31615 * 119.99822 * 10.72942 * 22 20 19 24 24 Si 1.86796 * 119.99785 * 190.73332 * 22 20 19 25 25 H 1.48500 * 109.47315 * 90.00141 * 24 22 20 26 26 H 1.48505 * 109.47094 * 209.99997 * 24 22 20 27 27 H 1.48501 * 109.47297 * 329.99840 * 24 22 20 28 28 N 1.31126 * 106.90027 * 359.54383 * 5 4 3 29 29 H 1.09007 * 109.46818 * 270.02009 * 1 2 3 30 30 H 1.09002 * 109.47694 * 30.01751 * 1 2 3 31 31 H 1.08996 * 109.47224 * 150.02156 * 1 2 3 32 32 H 1.09006 * 109.47173 * 149.69396 * 6 5 4 33 33 H 1.09004 * 109.47470 * 29.69121 * 6 5 4 34 34 H 1.09006 * 109.46831 * 60.00021 * 7 6 5 35 35 H 1.09005 * 109.47355 * 300.00407 * 7 6 5 36 36 H 1.08999 * 109.47294 * 59.99723 * 8 7 6 37 37 H 1.09005 * 109.47078 * 300.00453 * 8 7 6 38 38 H 0.97000 * 120.00174 * 359.97438 * 11 9 8 39 39 H 1.09000 * 109.46715 * 299.99388 * 12 11 9 40 40 H 1.09001 * 109.47133 * 60.00040 * 12 11 9 41 41 H 1.09000 * 109.50986 * 307.89855 * 15 13 12 42 42 H 1.09000 * 109.50938 * 68.05053 * 15 13 12 43 43 H 1.08997 * 109.50984 * 177.49429 * 17 16 15 44 44 H 1.09000 * 109.56112 * 57.36622 * 17 16 15 45 45 H 1.09004 * 109.68510 * 292.57842 * 18 17 16 46 46 H 1.09004 * 109.68199 * 172.03098 * 18 17 16 47 47 H 0.97006 * 119.99751 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2760 1.0474 0.0000 4 8 3.4419 0.7123 0.0062 5 6 3.5298 -0.6212 0.0006 6 6 4.7969 -1.4370 0.0010 7 6 5.2261 -1.7134 -1.4413 8 6 6.5121 -2.5422 -1.4410 9 6 6.9351 -2.8138 -2.8616 10 8 6.2730 -2.3869 -3.7837 11 7 8.0488 -3.5319 -3.1075 12 6 8.4598 -3.7964 -4.4886 13 6 9.7459 -4.6252 -4.4882 14 1 10.5353 -4.0774 -3.9735 15 6 10.1739 -4.9148 -5.9314 16 8 11.2640 -5.8398 -5.9224 17 6 10.9438 -7.1161 -5.3635 18 6 10.5553 -6.9392 -3.8912 19 7 9.5085 -5.9083 -3.8080 20 6 8.3479 -6.1361 -3.1179 21 1 7.4287 -5.6676 -3.4374 22 6 8.3528 -6.9692 -2.0075 23 7 9.4950 -7.3704 -1.4910 24 14 6.7385 -7.5208 -1.2467 25 1 6.2973 -8.7869 -1.8852 26 1 6.9273 -7.7406 0.2098 27 1 5.7074 -6.4735 -1.4596 28 7 2.3029 -1.0841 0.0003 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3633 -0.8901 -0.5135 32 1 4.6204 -2.3820 0.5149 33 1 5.5841 -0.8854 0.5150 34 1 5.4025 -0.7684 -1.9552 35 1 4.4389 -2.2650 -1.9554 36 1 6.3353 -3.4870 -0.9272 37 1 7.2995 -1.9909 -0.9268 38 1 8.5782 -3.8737 -2.3701 39 1 7.6723 -4.3475 -5.0027 40 1 8.6370 -2.8515 -5.0023 41 1 9.3361 -5.3447 -6.4803 42 1 10.4872 -3.9876 -6.4112 43 1 11.8110 -7.7726 -5.4348 44 1 10.1091 -7.5549 -5.9101 45 1 11.4266 -6.6247 -3.3167 46 1 10.1750 -7.8812 -3.4961 47 1 9.4984 -7.9529 -0.7153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501845493.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:45 Heat of formation + Delta-G solvation = -19.063688 kcal Electronic energy + Delta-G solvation = -29529.033029 eV Core-core repulsion = 25329.015242 eV Total energy + Delta-G solvation = -4200.017787 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -46.64421 -40.83276 -39.87436 -37.28143 -36.97229 -36.28815 -35.22275 -33.63063 -33.14952 -32.11535 -30.28201 -29.46580 -28.87575 -26.83708 -25.21831 -24.83294 -23.86236 -23.06378 -22.05120 -21.41213 -20.96141 -19.17566 -18.79982 -18.42826 -17.67973 -17.54742 -17.22743 -16.72108 -16.43735 -16.21043 -15.90791 -15.86266 -15.38495 -15.24323 -14.94424 -14.74698 -14.51042 -14.46734 -14.26292 -13.92878 -13.61084 -13.42664 -13.32338 -13.10678 -12.89144 -12.72001 -12.69870 -12.58184 -12.43085 -12.28533 -12.11259 -12.06993 -11.97605 -11.82535 -11.72416 -11.28991 -10.95336 -10.86201 -10.55798 -10.52478 -9.77195 -8.58566 -7.82309 -5.34030 0.07482 1.14824 1.45638 1.53210 1.57562 1.77863 1.83697 2.43492 2.52076 2.70359 3.04302 3.05584 3.33843 3.47573 3.76875 3.85073 4.01227 4.07922 4.15655 4.23099 4.32557 4.40119 4.46688 4.48998 4.53549 4.57247 4.62327 4.65260 4.66632 4.69691 4.71983 4.78995 4.86046 4.90070 5.02795 5.05107 5.13575 5.15386 5.27262 5.33481 5.62753 5.69358 5.74672 6.31586 6.40871 6.80945 7.10557 7.14708 7.44822 7.80413 8.37213 9.22070 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015943 B = 0.002534 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.857591 B =11048.175115 C =12235.570709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.159 3.841 3 N -0.413 5.413 4 O 0.068 5.932 5 C 0.197 3.803 6 C -0.024 4.024 7 C -0.090 4.090 8 C -0.133 4.133 9 C 0.502 3.498 10 O -0.600 6.600 11 N -0.697 5.697 12 C 0.142 3.858 13 C 0.127 3.873 14 H 0.039 0.961 15 C 0.056 3.944 16 O -0.398 6.398 17 C 0.045 3.955 18 C 0.149 3.851 19 N -0.605 5.605 20 C -0.242 4.242 21 H 0.070 0.930 22 C -0.030 4.030 23 N -0.927 5.927 24 Si 0.945 3.055 25 H -0.299 1.299 26 H -0.291 1.291 27 H -0.268 1.268 28 N -0.512 5.512 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.125 0.875 33 H 0.142 0.858 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.105 0.895 37 H 0.132 0.868 38 H 0.414 0.586 39 H 0.045 0.955 40 H 0.077 0.923 41 H 0.047 0.953 42 H 0.117 0.883 43 H 0.103 0.897 44 H 0.042 0.958 45 H 0.008 0.992 46 H 0.065 0.935 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.981 11.124 2.966 13.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 N -0.125 5.125 4 O 0.013 5.987 5 C -0.023 4.023 6 C -0.063 4.063 7 C -0.129 4.129 8 C -0.172 4.172 9 C 0.290 3.710 10 O -0.483 6.483 11 N -0.348 5.348 12 C 0.017 3.983 13 C 0.020 3.980 14 H 0.057 0.943 15 C -0.023 4.023 16 O -0.317 6.317 17 C -0.032 4.032 18 C 0.023 3.977 19 N -0.330 5.330 20 C -0.372 4.372 21 H 0.087 0.913 22 C -0.227 4.227 23 N -0.572 5.572 24 Si 0.774 3.226 25 H -0.227 1.227 26 H -0.217 1.217 27 H -0.192 1.192 28 N -0.246 5.246 29 H 0.124 0.876 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.143 0.857 33 H 0.160 0.840 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.123 0.877 37 H 0.150 0.850 38 H 0.251 0.749 39 H 0.063 0.937 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.134 0.866 43 H 0.121 0.879 44 H 0.060 0.940 45 H 0.026 0.974 46 H 0.084 0.916 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.857 11.878 2.397 14.442 hybrid contribution -0.595 -1.110 0.837 1.512 sum -8.452 10.769 3.235 14.066 Atomic orbital electron populations 1.20339 0.80552 1.05599 1.05593 1.26654 1.02211 0.83114 0.99320 1.74605 0.89837 1.24738 1.23297 1.85250 1.22179 1.25291 1.66019 1.29376 0.97635 0.81929 0.93341 1.20525 0.87638 0.99083 0.99036 1.21153 0.96523 1.00707 0.94546 1.21627 0.99500 1.03393 0.92718 1.21185 0.79995 0.77187 0.92585 1.90635 1.55058 1.54488 1.48097 1.46071 1.26855 1.52489 1.09361 1.21052 0.95280 0.98068 0.83867 1.21539 0.95019 0.87492 0.93902 0.94330 1.23003 0.89787 0.93801 0.95668 1.87804 1.37074 1.24451 1.82365 1.23219 1.00496 0.84746 0.94781 1.21234 0.90363 0.93819 0.92236 1.44284 1.18070 1.10165 1.60524 1.19300 0.87061 1.26402 1.04446 0.91261 1.25612 0.98165 1.01918 0.97026 1.70102 1.25089 1.38073 1.23984 0.85623 0.81176 0.78358 0.77424 1.22700 1.21728 1.19223 1.71960 1.00693 1.30113 1.21847 0.87635 0.88373 0.88311 0.85675 0.84038 0.91035 0.93010 0.87713 0.85038 0.74891 0.93651 0.90518 0.93497 0.86561 0.87871 0.94007 0.97412 0.91637 0.94074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.51 71.23 0.75 -0.15 16 2 C 0.16 3.75 8.22 138.46 1.14 4.88 16 3 N -0.41 -10.60 12.16 -60.32 -0.73 -11.33 16 4 O 0.07 1.62 11.31 74.87 0.85 2.47 16 5 C 0.20 4.34 7.77 88.38 0.69 5.03 16 6 C -0.02 -0.37 5.84 29.85 0.17 -0.20 16 7 C -0.09 -1.93 4.49 30.59 0.14 -1.79 16 8 C -0.13 -2.94 5.70 29.85 0.17 -2.77 16 9 C 0.50 16.22 7.83 87.66 0.69 16.90 16 10 O -0.60 -23.51 15.98 -3.04 -0.05 -23.56 16 11 N -0.70 -23.43 3.77 -463.05 -1.75 -25.18 16 12 C 0.14 4.86 4.45 86.38 0.38 5.25 16 13 C 0.13 4.59 3.21 44.97 0.14 4.74 16 14 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 15 C 0.06 1.80 6.29 72.08 0.45 2.25 16 16 O -0.40 -14.34 10.74 -148.98 -1.60 -15.94 16 17 C 0.05 1.65 6.98 72.08 0.50 2.15 16 18 C 0.15 6.59 5.38 86.35 0.46 7.05 16 19 N -0.60 -26.51 3.03 -673.71 -2.04 -28.55 16 20 C -0.24 -11.37 7.06 84.03 0.59 -10.77 16 21 H 0.07 3.31 5.81 -2.91 -0.02 3.30 16 22 C -0.03 -1.49 5.06 84.86 0.43 -1.06 16 23 N -0.93 -48.51 11.13 21.65 0.24 -48.27 16 24 Si 0.94 40.59 29.57 68.60 2.03 42.62 16 25 H -0.30 -13.41 7.11 99.48 0.71 -12.70 16 26 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 27 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 28 N -0.51 -13.04 11.55 -303.20 -3.50 -16.54 16 29 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.13 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.14 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.07 1.62 8.10 -2.38 -0.02 1.60 16 35 H 0.05 1.40 8.10 -2.38 -0.02 1.38 16 36 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.13 1.99 8.14 -2.38 -0.02 1.97 16 38 H 0.41 14.38 7.31 -92.71 -0.68 13.70 16 39 H 0.05 1.74 7.57 -2.39 -0.02 1.73 16 40 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 43 H 0.10 3.23 8.14 -2.39 -0.02 3.22 16 44 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 46 H 0.07 3.24 6.33 -2.39 -0.02 3.23 16 47 H 0.25 12.92 8.31 -92.70 -0.77 12.15 16 Total: -1.00 -67.10 384.85 0.47 -66.64 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 0.31 Total: 26.15 kcal Atomic # 6 Polarization: 24.79 SS G_CDS: 6.71 Total: 31.50 kcal Atomic # 7 Polarization: -122.09 SS G_CDS: -7.78 Total: -129.88 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -0.80 Total: -37.03 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Total: -67.10 0.47 -66.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501845493.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.573 kcal (2) G-P(sol) polarization free energy of solvation -67.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds