Wall clock time and date at job start Tue Mar 31 2020 21:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29946 * 126.28844 * 2 1 4 4 O 1.21299 * 110.25053 * 179.68243 * 3 2 1 5 5 C 1.33640 * 109.81489 * 0.46682 * 4 3 2 6 6 C 1.50692 * 126.55615 * 179.80154 * 5 4 3 7 7 C 1.53001 * 109.47351 * 269.68725 * 6 5 4 8 8 C 1.52993 * 109.47072 * 179.97438 * 7 6 5 9 9 C 1.50705 * 109.46949 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99783 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00035 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99965 * 180.02562 * 11 9 8 13 13 C 1.52990 * 109.47021 * 179.97438 * 12 11 9 14 14 H 1.08994 * 109.71505 * 56.66275 * 13 12 11 15 15 C 1.53713 * 109.74694 * 177.43337 * 13 12 11 16 16 O 1.42966 * 109.14951 * 172.16238 * 15 13 12 17 17 C 1.42963 * 114.16616 * 297.28662 * 16 15 13 18 18 C 1.53302 * 109.22102 * 62.58288 * 17 16 15 19 19 N 1.47155 * 109.68073 * 296.12202 * 13 12 11 20 20 C 1.36935 * 120.98326 * 9.76883 * 19 13 12 21 21 H 1.08001 * 119.99652 * 345.33877 * 20 19 13 22 22 C 1.38815 * 120.00049 * 165.33179 * 20 19 13 23 23 N 1.31621 * 119.99656 * 139.70590 * 22 20 19 24 24 Si 1.86795 * 119.99948 * 319.70838 * 22 20 19 25 25 H 1.48507 * 109.46981 * 275.60520 * 24 22 20 26 26 H 1.48492 * 109.47381 * 35.60706 * 24 22 20 27 27 H 1.48499 * 109.46911 * 155.61233 * 24 22 20 28 28 N 1.31132 * 106.89397 * 359.53951 * 5 4 3 29 29 H 1.09002 * 109.47588 * 270.03019 * 1 2 3 30 30 H 1.09004 * 109.47239 * 30.02733 * 1 2 3 31 31 H 1.09003 * 109.47348 * 150.02332 * 1 2 3 32 32 H 1.08999 * 109.47363 * 149.68717 * 6 5 4 33 33 H 1.08999 * 109.47094 * 29.68942 * 6 5 4 34 34 H 1.09003 * 109.46672 * 60.00149 * 7 6 5 35 35 H 1.08999 * 109.47199 * 300.00153 * 7 6 5 36 36 H 1.08999 * 109.47244 * 60.00235 * 8 7 6 37 37 H 1.08998 * 109.47476 * 299.99736 * 8 7 6 38 38 H 0.96999 * 119.99909 * 359.97438 * 11 9 8 39 39 H 1.08999 * 109.47363 * 59.99210 * 12 11 9 40 40 H 1.08999 * 109.46923 * 299.99540 * 12 11 9 41 41 H 1.09003 * 109.65872 * 52.19960 * 15 13 12 42 42 H 1.09003 * 109.44363 * 291.99969 * 15 13 12 43 43 H 1.09000 * 109.51287 * 302.65824 * 17 16 15 44 44 H 1.08996 * 109.55029 * 182.52537 * 17 16 15 45 45 H 1.08991 * 109.67726 * 187.97302 * 18 17 16 46 46 H 1.08996 * 109.71051 * 67.43836 * 18 17 16 47 47 H 0.96994 * 119.99961 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0474 0.0000 4 8 3.4418 0.7123 0.0063 5 6 3.5299 -0.6212 0.0008 6 6 4.7969 -1.4370 0.0014 7 6 5.2262 -1.7135 -1.4408 8 6 6.5128 -2.5412 -1.4402 9 6 6.9360 -2.8131 -2.8608 10 8 6.2734 -2.3871 -3.7830 11 7 8.0503 -3.5304 -3.1065 12 6 8.4619 -3.7942 -4.4876 13 6 9.7485 -4.6220 -4.4869 14 1 9.5935 -5.5420 -3.9235 15 6 10.1513 -4.9570 -5.9320 16 8 11.4433 -5.5690 -5.9289 17 6 12.4885 -4.7272 -5.4362 18 6 12.2062 -4.3776 -3.9705 19 7 10.8380 -3.8441 -3.8758 20 6 10.5854 -2.6618 -3.2330 21 1 9.6346 -2.1671 -3.3662 22 6 11.5513 -2.0990 -2.4100 23 7 11.7484 -0.7977 -2.4213 24 14 12.5712 -3.1885 -1.2867 25 1 11.8261 -3.4349 -0.0260 26 1 12.8408 -4.4825 -1.9634 27 1 13.8576 -2.5141 -0.9775 28 7 2.3030 -1.0841 0.0006 29 1 -0.3634 0.0005 1.0276 30 1 -0.3634 0.8898 -0.5143 31 1 -0.3634 -0.8902 -0.5135 32 1 4.6204 -2.3818 0.5155 33 1 5.5840 -0.8853 0.5154 34 1 5.4027 -0.7686 -1.9548 35 1 4.4390 -2.2652 -1.9548 36 1 6.3368 -3.4861 -0.9260 37 1 7.2998 -1.9892 -0.9264 38 1 8.5800 -3.8714 -2.3690 39 1 8.6386 -2.8490 -5.0009 40 1 7.6750 -4.3455 -5.0023 41 1 10.1828 -4.0430 -6.5252 42 1 9.4233 -5.6455 -6.3613 43 1 12.5284 -3.8124 -6.0275 44 1 13.4423 -5.2496 -5.5086 45 1 12.9177 -3.6260 -3.6289 46 1 12.2945 -5.2731 -3.3554 47 1 12.4235 -0.4044 -1.8465 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501845498.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:51 Heat of formation + Delta-G solvation = 21.836437 kcal Electronic energy + Delta-G solvation = -29402.912829 eV Core-core repulsion = 25204.668605 eV Total energy + Delta-G solvation = -4198.244225 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.72101 -39.54203 -38.58738 -36.35665 -35.73803 -35.22878 -33.74167 -32.63183 -31.77996 -31.01475 -29.52547 -28.47759 -27.46136 -25.55533 -23.88881 -23.51810 -22.85805 -22.01598 -21.19627 -20.06631 -19.64666 -18.22337 -17.62744 -17.14069 -16.36741 -16.14693 -15.97933 -15.58291 -15.33012 -14.99009 -14.83715 -14.43783 -14.29931 -13.97151 -13.86791 -13.77070 -13.55010 -13.19377 -13.06612 -12.74113 -12.44062 -12.42092 -12.25202 -12.01085 -11.93961 -11.65422 -11.57129 -11.42728 -11.18761 -11.05139 -10.83987 -10.80749 -10.53494 -10.28258 -10.02141 -9.91224 -9.65904 -9.33270 -9.28002 -8.44322 -8.37403 -7.27013 -6.14715 -3.27867 0.98935 2.04279 2.64999 3.10179 3.27967 3.40387 3.43760 3.47346 3.68323 3.86654 4.29690 4.44850 4.59655 4.63266 4.78043 4.81532 5.02859 5.07214 5.13167 5.15256 5.26883 5.37364 5.39488 5.41893 5.46537 5.55467 5.63629 5.66954 5.73638 5.81893 5.83236 5.92307 5.93567 6.01430 6.04949 6.11958 6.19755 6.23826 6.40792 6.58580 6.75122 6.98227 7.60525 7.68911 8.01302 8.05817 8.15034 8.71832 8.76323 9.59501 9.95049 10.96439 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016912 B = 0.002384 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.204360 B =11740.170602 C =12858.338332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.164 3.836 3 N -0.389 5.389 4 O 0.077 5.923 5 C 0.195 3.805 6 C -0.031 4.031 7 C -0.099 4.099 8 C -0.139 4.139 9 C 0.512 3.488 10 O -0.559 6.559 11 N -0.701 5.701 12 C 0.134 3.866 13 C 0.130 3.870 14 H 0.045 0.955 15 C 0.055 3.945 16 O -0.390 6.390 17 C 0.041 3.959 18 C 0.113 3.887 19 N -0.600 5.600 20 C -0.287 4.287 21 H 0.105 0.895 22 C 0.040 3.960 23 N -0.870 5.870 24 Si 0.812 3.188 25 H -0.293 1.293 26 H -0.249 1.249 27 H -0.297 1.297 28 N -0.486 5.486 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.410 0.590 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.087 0.913 43 H 0.051 0.949 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.037 0.963 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.906 -4.654 3.871 14.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.108 4.108 3 N -0.098 5.098 4 O 0.020 5.980 5 C -0.025 4.025 6 C -0.070 4.070 7 C -0.138 4.138 8 C -0.179 4.179 9 C 0.298 3.702 10 O -0.439 6.439 11 N -0.352 5.352 12 C 0.009 3.991 13 C 0.023 3.977 14 H 0.062 0.938 15 C -0.024 4.024 16 O -0.308 6.308 17 C -0.037 4.037 18 C -0.013 4.013 19 N -0.326 5.326 20 C -0.413 4.413 21 H 0.122 0.878 22 C -0.162 4.162 23 N -0.509 5.509 24 Si 0.639 3.361 25 H -0.221 1.221 26 H -0.174 1.174 27 H -0.224 1.224 28 N -0.220 5.220 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.130 0.870 33 H 0.125 0.875 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.121 0.879 38 H 0.246 0.754 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.105 0.895 43 H 0.069 0.931 44 H 0.102 0.898 45 H 0.093 0.907 46 H 0.055 0.945 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.904 -3.842 3.204 14.777 hybrid contribution 1.201 -0.334 1.426 1.894 sum -12.703 -4.175 4.630 14.151 Atomic orbital electron populations 1.20121 0.83053 1.04661 1.04148 1.25911 1.00598 0.83661 1.00653 1.74638 0.89467 1.24017 1.21712 1.85305 1.22245 1.24903 1.65560 1.28863 0.97051 0.82104 0.94528 1.20389 0.87906 0.98232 1.00485 1.21297 0.97317 1.01996 0.93183 1.21586 0.98772 1.02149 0.95429 1.20403 0.80634 0.78055 0.91108 1.90667 1.54653 1.52031 1.46514 1.45958 1.25598 1.54222 1.09416 1.21185 0.94225 1.00236 0.83415 1.21472 0.88359 0.93956 0.93901 0.93798 1.22982 0.85019 0.97927 0.96503 1.87816 1.16531 1.41242 1.85231 1.23184 0.89718 0.94276 0.96488 1.22119 0.87767 0.97707 0.93695 1.44492 1.00230 1.23841 1.64041 1.19069 1.04039 0.94716 1.23477 0.87798 1.24909 0.96337 0.94626 1.00339 1.70212 1.32496 1.11110 1.37128 0.88272 0.79784 0.83789 0.84291 1.22080 1.17356 1.22360 1.71907 0.99772 1.29368 1.20966 0.89435 0.89564 0.89046 0.87014 0.87485 0.90185 0.90342 0.88824 0.87924 0.75366 0.90725 0.92114 0.92826 0.89516 0.93052 0.89845 0.90657 0.94549 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.46 10.51 36.00 0.38 -0.09 16 2 C 0.16 1.97 8.22 -156.37 -1.28 0.68 16 3 N -0.39 -5.23 12.16 30.90 0.38 -4.85 16 4 O 0.08 1.00 11.31 18.11 0.20 1.21 16 5 C 0.19 2.25 7.77 -13.06 -0.10 2.15 16 6 C -0.03 -0.27 5.84 -27.89 -0.16 -0.43 16 7 C -0.10 -1.11 4.49 -26.73 -0.12 -1.23 16 8 C -0.14 -1.61 5.70 -27.88 -0.16 -1.77 16 9 C 0.51 8.32 7.83 -10.98 -0.09 8.23 16 10 O -0.56 -10.99 15.98 5.55 0.09 -10.91 16 11 N -0.70 -11.53 3.60 -60.29 -0.22 -11.74 16 12 C 0.13 2.27 4.42 -4.04 -0.02 2.25 16 13 C 0.13 2.26 3.19 -67.21 -0.21 2.04 16 14 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 15 C 0.05 0.87 6.31 37.53 0.24 1.11 16 16 O -0.39 -6.85 10.74 -35.23 -0.38 -7.23 16 17 C 0.04 0.72 6.99 37.31 0.26 0.98 16 18 C 0.11 2.26 4.41 -3.53 -0.02 2.25 16 19 N -0.60 -12.51 2.94 -164.06 -0.48 -13.00 16 20 C -0.29 -6.88 8.09 -15.06 -0.12 -7.00 16 21 H 0.10 2.63 5.30 -52.49 -0.28 2.35 16 22 C 0.04 1.02 4.90 -17.43 -0.09 0.93 16 23 N -0.87 -24.33 13.97 55.49 0.78 -23.55 16 24 Si 0.81 18.70 26.36 -169.99 -4.48 14.22 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.25 -5.35 4.33 56.52 0.24 -5.10 16 27 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 28 N -0.49 -6.11 11.55 -9.87 -0.11 -6.22 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 35 H 0.08 0.97 8.10 -51.93 -0.42 0.54 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.41 6.61 7.60 -40.82 -0.31 6.30 16 39 H 0.07 1.48 7.54 -51.93 -0.39 1.08 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.08 1.63 4.88 -51.93 -0.25 1.38 16 46 H 0.04 0.74 6.82 -51.93 -0.35 0.38 16 47 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 LS Contribution 378.30 15.07 5.70 5.70 Total: -1.00 -32.48 378.30 -7.24 -39.71 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -7.22 Total: 6.56 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: -1.49 Total: 10.09 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: 0.34 Total: -59.37 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.08 Total: -16.92 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -4.48 Total: 14.22 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.48 -7.24 -39.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501845498.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.551 kcal (2) G-P(sol) polarization free energy of solvation -32.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds