Wall clock time and date at job start Tue Mar 31 2020 21:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29946 * 126.28844 * 2 1 4 4 O 1.21299 * 110.25053 * 179.68243 * 3 2 1 5 5 C 1.33640 * 109.81489 * 0.46682 * 4 3 2 6 6 C 1.50692 * 126.55615 * 179.80154 * 5 4 3 7 7 C 1.53001 * 109.47351 * 269.68725 * 6 5 4 8 8 C 1.52993 * 109.47072 * 179.97438 * 7 6 5 9 9 C 1.50705 * 109.46949 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99783 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00035 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99965 * 180.02562 * 11 9 8 13 13 C 1.52990 * 109.47021 * 179.97438 * 12 11 9 14 14 H 1.08994 * 109.71505 * 56.66275 * 13 12 11 15 15 C 1.53713 * 109.74694 * 177.43337 * 13 12 11 16 16 O 1.42966 * 109.14951 * 172.16238 * 15 13 12 17 17 C 1.42963 * 114.16616 * 297.28662 * 16 15 13 18 18 C 1.53302 * 109.22102 * 62.58288 * 17 16 15 19 19 N 1.47155 * 109.68073 * 296.12202 * 13 12 11 20 20 C 1.36935 * 120.98326 * 9.76883 * 19 13 12 21 21 H 1.08001 * 119.99652 * 345.33877 * 20 19 13 22 22 C 1.38815 * 120.00049 * 165.33179 * 20 19 13 23 23 N 1.31621 * 119.99656 * 139.70590 * 22 20 19 24 24 Si 1.86795 * 119.99948 * 319.70838 * 22 20 19 25 25 H 1.48507 * 109.46981 * 275.60520 * 24 22 20 26 26 H 1.48492 * 109.47381 * 35.60706 * 24 22 20 27 27 H 1.48499 * 109.46911 * 155.61233 * 24 22 20 28 28 N 1.31132 * 106.89397 * 359.53951 * 5 4 3 29 29 H 1.09002 * 109.47588 * 270.03019 * 1 2 3 30 30 H 1.09004 * 109.47239 * 30.02733 * 1 2 3 31 31 H 1.09003 * 109.47348 * 150.02332 * 1 2 3 32 32 H 1.08999 * 109.47363 * 149.68717 * 6 5 4 33 33 H 1.08999 * 109.47094 * 29.68942 * 6 5 4 34 34 H 1.09003 * 109.46672 * 60.00149 * 7 6 5 35 35 H 1.08999 * 109.47199 * 300.00153 * 7 6 5 36 36 H 1.08999 * 109.47244 * 60.00235 * 8 7 6 37 37 H 1.08998 * 109.47476 * 299.99736 * 8 7 6 38 38 H 0.96999 * 119.99909 * 359.97438 * 11 9 8 39 39 H 1.08999 * 109.47363 * 59.99210 * 12 11 9 40 40 H 1.08999 * 109.46923 * 299.99540 * 12 11 9 41 41 H 1.09003 * 109.65872 * 52.19960 * 15 13 12 42 42 H 1.09003 * 109.44363 * 291.99969 * 15 13 12 43 43 H 1.09000 * 109.51287 * 302.65824 * 17 16 15 44 44 H 1.08996 * 109.55029 * 182.52537 * 17 16 15 45 45 H 1.08991 * 109.67726 * 187.97302 * 18 17 16 46 46 H 1.08996 * 109.71051 * 67.43836 * 18 17 16 47 47 H 0.96994 * 119.99961 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0474 0.0000 4 8 3.4418 0.7123 0.0063 5 6 3.5299 -0.6212 0.0008 6 6 4.7969 -1.4370 0.0014 7 6 5.2262 -1.7135 -1.4408 8 6 6.5128 -2.5412 -1.4402 9 6 6.9360 -2.8131 -2.8608 10 8 6.2734 -2.3871 -3.7830 11 7 8.0503 -3.5304 -3.1065 12 6 8.4619 -3.7942 -4.4876 13 6 9.7485 -4.6220 -4.4869 14 1 9.5935 -5.5420 -3.9235 15 6 10.1513 -4.9570 -5.9320 16 8 11.4433 -5.5690 -5.9289 17 6 12.4885 -4.7272 -5.4362 18 6 12.2062 -4.3776 -3.9705 19 7 10.8380 -3.8441 -3.8758 20 6 10.5854 -2.6618 -3.2330 21 1 9.6346 -2.1671 -3.3662 22 6 11.5513 -2.0990 -2.4100 23 7 11.7484 -0.7977 -2.4213 24 14 12.5712 -3.1885 -1.2867 25 1 11.8261 -3.4349 -0.0260 26 1 12.8408 -4.4825 -1.9634 27 1 13.8576 -2.5141 -0.9775 28 7 2.3030 -1.0841 0.0006 29 1 -0.3634 0.0005 1.0276 30 1 -0.3634 0.8898 -0.5143 31 1 -0.3634 -0.8902 -0.5135 32 1 4.6204 -2.3818 0.5155 33 1 5.5840 -0.8853 0.5154 34 1 5.4027 -0.7686 -1.9548 35 1 4.4390 -2.2652 -1.9548 36 1 6.3368 -3.4861 -0.9260 37 1 7.2998 -1.9892 -0.9264 38 1 8.5800 -3.8714 -2.3690 39 1 8.6386 -2.8490 -5.0009 40 1 7.6750 -4.3455 -5.0023 41 1 10.1828 -4.0430 -6.5252 42 1 9.4233 -5.6455 -6.3613 43 1 12.5284 -3.8124 -6.0275 44 1 13.4423 -5.2496 -5.5086 45 1 12.9177 -3.6260 -3.6289 46 1 12.2945 -5.2731 -3.3554 47 1 12.4235 -0.4044 -1.8465 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501845498.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:50 Heat of formation + Delta-G solvation = -2.790987 kcal Electronic energy + Delta-G solvation = -29403.980754 eV Core-core repulsion = 25204.668605 eV Total energy + Delta-G solvation = -4199.312150 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -46.63557 -40.91318 -39.98712 -37.28328 -37.02519 -36.29453 -35.31341 -33.67288 -33.42250 -32.47596 -30.26977 -29.52311 -29.01451 -26.86018 -25.22425 -24.84276 -24.00827 -23.28096 -22.05405 -21.53724 -21.00816 -19.16566 -18.85381 -18.44947 -17.79113 -17.55825 -17.29257 -16.83810 -16.54943 -16.43570 -15.97904 -15.91175 -15.51039 -15.31508 -14.98402 -14.75418 -14.49773 -14.39664 -14.21190 -14.04341 -13.85166 -13.52920 -13.45513 -13.36339 -13.14147 -12.76305 -12.69792 -12.57576 -12.39553 -12.27016 -12.15484 -12.11159 -11.98531 -11.72462 -11.37085 -11.19812 -11.03031 -10.94347 -10.73258 -10.19668 -9.83706 -9.01884 -8.10193 -5.19555 0.08130 1.15511 1.43697 1.57280 1.57687 1.79769 1.82239 2.40649 2.56487 2.68818 2.85596 3.02205 3.06474 3.33915 3.76043 3.83936 3.99341 4.02037 4.14458 4.16018 4.25809 4.37391 4.39613 4.47771 4.48738 4.54467 4.55462 4.55545 4.66330 4.67465 4.72047 4.77264 4.81305 4.87590 4.88809 4.97506 5.05155 5.06903 5.15093 5.27422 5.28909 5.64311 5.86358 6.21220 6.24870 6.74432 6.91365 7.10650 7.42425 7.71516 8.09903 9.03883 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016912 B = 0.002384 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.204360 B =11740.170602 C =12858.338332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.161 3.839 3 N -0.416 5.416 4 O 0.060 5.940 5 C 0.196 3.804 6 C -0.023 4.023 7 C -0.090 4.090 8 C -0.130 4.130 9 C 0.503 3.497 10 O -0.599 6.599 11 N -0.701 5.701 12 C 0.139 3.861 13 C 0.131 3.869 14 H 0.063 0.937 15 C 0.055 3.945 16 O -0.391 6.391 17 C 0.048 3.952 18 C 0.106 3.894 19 N -0.611 5.611 20 C -0.255 4.255 21 H 0.085 0.915 22 C -0.014 4.014 23 N -0.926 5.926 24 Si 0.870 3.130 25 H -0.297 1.297 26 H -0.222 1.222 27 H -0.317 1.317 28 N -0.504 5.504 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.139 0.861 33 H 0.128 0.872 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.132 0.868 37 H 0.109 0.891 38 H 0.413 0.587 39 H 0.039 0.961 40 H 0.082 0.918 41 H 0.043 0.957 42 H 0.123 0.877 43 H 0.041 0.959 44 H 0.114 0.886 45 H 0.056 0.944 46 H 0.045 0.955 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.404 -7.555 4.474 16.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.112 4.112 3 N -0.129 5.129 4 O 0.006 5.994 5 C -0.024 4.024 6 C -0.062 4.062 7 C -0.130 4.130 8 C -0.170 4.170 9 C 0.292 3.708 10 O -0.481 6.481 11 N -0.352 5.352 12 C 0.014 3.986 13 C 0.025 3.975 14 H 0.081 0.919 15 C -0.023 4.023 16 O -0.309 6.309 17 C -0.030 4.030 18 C -0.019 4.019 19 N -0.338 5.338 20 C -0.383 4.383 21 H 0.102 0.898 22 C -0.211 4.211 23 N -0.570 5.570 24 Si 0.698 3.302 25 H -0.225 1.225 26 H -0.145 1.145 27 H -0.246 1.246 28 N -0.239 5.239 29 H 0.124 0.876 30 H 0.114 0.886 31 H 0.121 0.879 32 H 0.157 0.843 33 H 0.146 0.854 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.150 0.850 37 H 0.127 0.873 38 H 0.250 0.750 39 H 0.057 0.943 40 H 0.100 0.900 41 H 0.062 0.938 42 H 0.141 0.859 43 H 0.059 0.941 44 H 0.132 0.868 45 H 0.074 0.926 46 H 0.063 0.937 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.379 -6.818 3.802 16.362 hybrid contribution 1.268 0.534 1.118 1.773 sum -13.111 -6.285 4.920 15.350 Atomic orbital electron populations 1.20349 0.80342 1.05666 1.05645 1.26705 1.02256 0.83150 0.99075 1.74631 0.89796 1.25033 1.23448 1.85268 1.22337 1.25654 1.66155 1.29426 0.97806 0.81834 0.93314 1.20517 0.87284 0.99417 0.98947 1.21145 0.96845 1.00409 0.94579 1.21615 0.98753 1.04147 0.92454 1.21243 0.79953 0.76924 0.92702 1.90647 1.55833 1.53416 1.48252 1.45989 1.25705 1.54245 1.09222 1.21085 0.94966 0.98693 0.83833 1.21662 0.87166 0.93887 0.94736 0.91926 1.23095 0.85290 0.98594 0.95353 1.87829 1.16884 1.41241 1.84982 1.23125 0.91130 0.94511 0.94215 1.22181 0.86759 0.97205 0.95756 1.44618 1.01853 1.23608 1.63671 1.19025 1.02568 0.95015 1.21702 0.89779 1.25347 0.98321 0.95209 1.02235 1.70309 1.34648 1.13031 1.38997 0.87361 0.77351 0.83131 0.82349 1.22497 1.14543 1.24555 1.71935 1.00275 1.29825 1.21853 0.87562 0.88599 0.87945 0.84271 0.85356 0.92840 0.91615 0.84978 0.87265 0.75040 0.94302 0.90018 0.93836 0.85938 0.94073 0.86807 0.92570 0.93694 0.93445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.85 10.51 71.23 0.75 -0.10 16 2 C 0.16 3.76 8.22 138.46 1.14 4.90 16 3 N -0.42 -11.26 12.16 -60.32 -0.73 -12.00 16 4 O 0.06 1.57 11.31 74.86 0.85 2.41 16 5 C 0.20 4.41 7.77 88.38 0.69 5.09 16 6 C -0.02 -0.36 5.84 29.85 0.17 -0.18 16 7 C -0.09 -1.97 4.49 30.59 0.14 -1.83 16 8 C -0.13 -2.80 5.70 29.85 0.17 -2.63 16 9 C 0.50 16.13 7.83 87.66 0.69 16.82 16 10 O -0.60 -23.95 15.98 -3.04 -0.05 -23.99 16 11 N -0.70 -22.38 3.60 -463.06 -1.67 -24.05 16 12 C 0.14 4.58 4.42 86.37 0.38 4.96 16 13 C 0.13 4.25 3.19 45.10 0.14 4.39 16 14 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 15 C 0.06 1.61 6.31 72.22 0.46 2.07 16 16 O -0.39 -12.43 10.74 -148.98 -1.60 -14.03 16 17 C 0.05 1.55 6.99 72.08 0.50 2.05 16 18 C 0.11 4.02 4.41 86.36 0.38 4.40 16 19 N -0.61 -24.59 2.94 -672.95 -1.98 -26.56 16 20 C -0.26 -12.22 8.09 84.03 0.68 -11.54 16 21 H 0.08 4.34 5.30 -2.91 -0.02 4.32 16 22 C -0.01 -0.72 4.90 84.86 0.42 -0.30 16 23 N -0.93 -53.41 13.97 21.65 0.30 -53.11 16 24 Si 0.87 38.81 26.36 68.60 1.81 40.62 16 25 H -0.30 -13.27 7.11 99.48 0.71 -12.57 16 26 H -0.22 -8.81 4.33 99.48 0.43 -8.38 16 27 H -0.32 -15.18 7.11 99.48 0.71 -14.47 16 28 N -0.50 -12.28 11.55 -303.21 -3.50 -15.78 16 29 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.14 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.05 1.44 8.10 -2.39 -0.02 1.42 16 35 H 0.07 1.59 8.10 -2.39 -0.02 1.58 16 36 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.41 12.62 7.60 -92.71 -0.70 11.92 16 39 H 0.04 1.56 7.54 -2.39 -0.02 1.54 16 40 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 43 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 45 H 0.06 2.35 4.88 -2.39 -0.01 2.34 16 46 H 0.05 1.65 6.82 -2.39 -0.02 1.64 16 47 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -72.70 378.30 0.14 -72.55 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: 0.02 Total: 25.84 kcal Atomic # 6 Polarization: 21.39 SS G_CDS: 6.70 Total: 28.09 kcal Atomic # 7 Polarization: -123.92 SS G_CDS: -7.58 Total: -131.50 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -0.80 Total: -35.61 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 1.81 Total: 40.62 kcal Total: -72.70 0.14 -72.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501845498.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.764 kcal (2) G-P(sol) polarization free energy of solvation -72.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds